Wall clock time and date at job start Tue Mar 31 2020 16:03:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50689 * 109.47167 * 2 1 4 4 C 1.38689 * 119.90257 * 90.00049 * 3 2 1 5 5 C 1.37844 * 120.65442 * 180.02562 * 4 3 2 6 6 C 1.38963 * 119.97655 * 359.97438 * 5 4 3 7 7 O 1.34906 * 133.11613 * 179.97438 * 6 5 4 8 8 C 1.33805 * 111.34698 * 180.02562 * 7 6 5 9 9 C 1.36050 * 109.85598 * 0.02562 * 8 7 6 10 10 C 1.47084 * 127.14315 * 179.97438 * 9 8 7 11 11 O 1.21641 * 120.00056 * 180.02562 * 10 9 8 12 12 N 1.34773 * 119.99862 * 0.02562 * 10 9 8 13 13 C 1.46501 * 119.99933 * 179.97438 * 12 10 9 14 14 H 1.08995 * 112.90639 * 332.96968 * 13 12 10 15 15 C 1.53784 * 113.61327 * 104.22312 * 13 12 10 16 16 C 1.53956 * 87.11290 * 89.18805 * 15 13 12 17 17 H 1.08994 * 113.66678 * 139.89096 * 16 15 13 18 18 N 1.46505 * 113.61143 * 270.84482 * 16 15 13 19 19 C 1.36940 * 119.99727 * 183.30769 * 18 16 15 20 20 H 1.07999 * 119.99799 * 359.97438 * 19 18 16 21 21 C 1.38810 * 119.99797 * 179.97438 * 19 18 16 22 22 N 1.31619 * 119.99886 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00068 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47090 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.47312 * 119.99756 * 23 21 19 26 26 H 1.48501 * 109.47083 * 239.99884 * 23 21 19 27 27 C 1.53778 * 87.02085 * 25.35999 * 16 15 13 28 28 C 1.40241 * 119.25462 * 0.26293 * 6 5 4 29 29 C 1.37853 * 119.89732 * 270.01732 * 3 2 1 30 30 H 1.09000 * 109.47244 * 300.00211 * 1 2 3 31 31 H 1.09004 * 109.46934 * 60.00618 * 1 2 3 32 32 H 1.09001 * 109.47527 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47282 * 239.99238 * 2 1 3 34 34 H 1.09006 * 109.46529 * 120.00029 * 2 1 3 35 35 H 1.08000 * 119.67103 * 359.97438 * 4 3 2 36 36 H 1.08000 * 120.01053 * 179.97438 * 5 4 3 37 37 H 1.08009 * 125.07092 * 179.97438 * 8 7 6 38 38 H 0.97006 * 120.00047 * 0.02562 * 12 10 9 39 39 H 1.08997 * 113.61494 * 203.66583 * 15 13 12 40 40 H 1.09002 * 113.61369 * 334.48343 * 15 13 12 41 41 H 0.96996 * 120.00029 * 3.30521 * 18 16 15 42 42 H 0.97005 * 119.99781 * 180.02562 * 22 21 19 43 43 H 1.08995 * 113.62082 * 220.04594 * 27 16 15 44 44 H 1.09003 * 113.61254 * 89.22691 * 27 16 15 45 45 H 1.07999 * 120.18250 * 0.02562 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.2628 2.0726 1.2023 5 6 2.7217 3.3722 1.2203 6 6 2.9584 4.0417 0.0258 7 8 3.3968 5.2843 -0.2636 8 6 3.4662 5.4808 -1.5853 9 6 3.0690 4.3568 -2.2411 10 6 2.9975 4.1562 -3.6964 11 8 2.6205 3.0905 -4.1456 12 7 3.3496 5.1531 -4.5322 13 6 3.2789 4.9531 -5.9817 14 1 3.3939 3.9088 -6.2720 15 6 2.0753 5.6469 -6.6413 16 6 2.9771 6.8840 -6.8045 17 1 2.8487 7.3963 -7.7579 18 7 2.9367 7.7949 -5.6577 19 6 3.6370 8.9712 -5.6927 20 1 4.2194 9.2271 -6.5655 21 6 3.5984 9.8344 -4.6064 22 7 2.8883 9.5227 -3.5430 23 14 4.5542 11.4387 -4.6538 24 1 5.2667 11.5522 -5.9518 25 1 3.6152 12.5790 -4.5026 26 1 5.5412 11.4597 -3.5444 27 6 4.1722 5.9166 -6.7808 28 6 2.7198 3.3819 -1.1885 29 6 2.2610 2.0687 -1.1951 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8934 -0.5140 -0.8899 34 1 1.8932 -0.5139 0.8901 35 1 2.0801 1.5570 2.1335 36 1 2.8973 3.8700 2.1626 37 1 3.7885 6.3955 -2.0607 38 1 3.6506 6.0028 -4.1739 39 1 1.7775 5.1974 -7.5886 40 1 1.2356 5.8021 -5.9639 41 1 2.4139 7.5648 -4.8737 42 1 2.8610 10.1261 -2.7840 43 1 5.0258 6.2908 -6.2158 44 1 4.4487 5.5402 -7.7657 45 1 2.0808 1.5610 -2.1311 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001022087396.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:03:35 Heat of formation + Delta-G solvation = 1.694304 kcal Electronic energy + Delta-G solvation = -27563.785764 eV Core-core repulsion = 23740.598941 eV Total energy + Delta-G solvation = -3823.186822 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.65963 -41.11953 -39.44592 -39.21471 -35.47602 -34.64225 -34.47842 -33.52879 -31.79344 -30.56079 -29.93738 -26.74837 -26.29579 -25.51677 -24.93954 -23.92051 -23.32443 -21.99918 -21.17662 -20.24612 -19.28209 -18.91025 -18.19535 -17.39800 -17.17111 -16.85994 -16.64650 -16.26136 -16.11957 -15.56591 -15.54643 -15.41894 -15.09553 -14.96924 -14.56009 -14.36686 -14.17527 -13.78823 -13.43802 -13.38695 -13.34430 -13.09802 -12.80062 -12.57397 -12.55395 -12.27400 -12.08627 -11.93769 -11.92533 -11.73259 -11.70024 -11.25034 -11.14219 -11.07131 -10.83146 -10.03794 -9.52166 -9.29367 -8.98603 -7.92741 -5.21216 -0.29119 0.23335 0.67054 1.49624 1.52682 1.59396 1.60053 2.09638 2.16342 2.57571 2.67192 3.33158 3.39687 3.45799 3.68052 3.75965 3.84468 3.85610 3.95242 4.11059 4.17214 4.22192 4.28144 4.36150 4.40519 4.51167 4.53661 4.73278 4.81076 4.84531 4.89667 4.97568 5.01407 5.06529 5.10080 5.14858 5.19927 5.23850 5.30604 5.37726 5.39958 5.55193 5.57354 5.61537 5.70827 6.01392 6.30127 6.51371 7.13079 7.36790 8.08319 8.33731 9.29487 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.014488 B = 0.003300 C = 0.002799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1932.110331 B = 8481.772244 C =10000.925619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.079 4.079 3 C -0.090 4.090 4 C -0.085 4.085 5 C -0.099 4.099 6 C 0.016 3.984 7 O -0.186 6.186 8 C 0.094 3.906 9 C -0.261 4.261 10 C 0.589 3.411 11 O -0.576 6.576 12 N -0.694 5.694 13 C 0.123 3.877 14 H 0.096 0.904 15 C -0.151 4.151 16 C 0.146 3.854 17 H 0.057 0.943 18 N -0.720 5.720 19 C -0.236 4.236 20 H 0.076 0.924 21 C -0.063 4.063 22 N -0.960 5.960 23 Si 0.964 3.036 24 H -0.271 1.271 25 H -0.301 1.301 26 H -0.294 1.294 27 C -0.159 4.159 28 C -0.110 4.110 29 C -0.086 4.086 30 H 0.062 0.938 31 H 0.037 0.963 32 H 0.075 0.925 33 H 0.069 0.931 34 H 0.100 0.900 35 H 0.176 0.824 36 H 0.161 0.839 37 H 0.229 0.771 38 H 0.409 0.591 39 H 0.120 0.880 40 H 0.048 0.952 41 H 0.375 0.625 42 H 0.251 0.749 43 H 0.059 0.941 44 H 0.116 0.884 45 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.499 -16.938 7.748 18.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.116 4.116 3 C -0.090 4.090 4 C -0.102 4.102 5 C -0.117 4.117 6 C -0.030 4.030 7 O -0.085 6.085 8 C 0.025 3.975 9 C -0.266 4.266 10 C 0.378 3.622 11 O -0.458 6.458 12 N -0.345 5.345 13 C 0.018 3.982 14 H 0.114 0.886 15 C -0.190 4.190 16 C 0.036 3.964 17 H 0.075 0.925 18 N -0.361 5.361 19 C -0.367 4.367 20 H 0.094 0.906 21 C -0.256 4.256 22 N -0.611 5.611 23 Si 0.795 3.205 24 H -0.195 1.195 25 H -0.228 1.228 26 H -0.221 1.221 27 C -0.199 4.199 28 C -0.111 4.111 29 C -0.104 4.104 30 H 0.081 0.919 31 H 0.056 0.944 32 H 0.094 0.906 33 H 0.088 0.912 34 H 0.118 0.882 35 H 0.194 0.806 36 H 0.179 0.821 37 H 0.245 0.755 38 H 0.247 0.753 39 H 0.138 0.862 40 H 0.067 0.933 41 H 0.208 0.792 42 H 0.060 0.940 43 H 0.078 0.922 44 H 0.134 0.866 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -0.588 -17.341 7.555 18.925 hybrid contribution 0.356 1.801 0.008 1.836 sum -0.233 -15.540 7.563 17.284 Atomic orbital electron populations 1.21760 0.94242 1.02629 1.01759 1.20576 0.96462 0.90425 1.04154 1.20183 0.99020 0.97950 0.91859 1.21252 0.97318 0.92637 0.99011 1.20376 1.02058 0.94768 0.94463 1.20088 1.03201 0.83307 0.96410 1.83863 1.69333 1.30804 1.24480 1.24883 0.93954 0.98890 0.79745 1.21028 1.15341 0.96567 0.93644 1.17279 0.76517 0.83558 0.84889 1.90682 1.49442 1.27202 1.78442 1.45771 1.66158 1.16107 1.06492 1.21841 0.97884 0.99521 0.78910 0.88630 1.23747 0.96560 0.96924 1.01806 1.21495 0.94671 0.89178 0.91010 0.92478 1.42375 1.57551 1.19768 1.16385 1.19557 1.21016 0.95978 1.00176 0.90639 1.25356 1.01931 1.01675 0.96684 1.69764 1.46098 1.38609 1.06594 0.85214 0.77711 0.80270 0.77336 1.19550 1.22833 1.22110 1.23942 0.98278 0.97096 1.00610 1.19629 1.04267 0.96007 0.91239 1.20563 0.98735 0.91960 0.99178 0.91868 0.94375 0.90643 0.91197 0.88172 0.80639 0.82116 0.75478 0.75340 0.86201 0.93270 0.79214 0.93983 0.92205 0.86601 0.86380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 9.89 71.98 0.71 -1.43 16 2 C -0.08 -1.22 6.06 29.84 0.18 -1.03 16 3 C -0.09 -1.95 5.13 -19.85 -0.10 -2.05 16 4 C -0.08 -1.52 9.67 22.28 0.22 -1.30 16 5 C -0.10 -2.14 10.06 22.35 0.22 -1.92 16 6 C 0.02 0.48 7.39 22.93 0.17 0.65 16 7 O -0.19 -5.95 10.53 -3.79 -0.04 -5.99 16 8 C 0.09 3.11 11.52 67.31 0.78 3.88 16 9 C -0.26 -9.38 6.31 -18.98 -0.12 -9.50 16 10 C 0.59 22.57 7.80 86.56 0.68 23.24 16 11 O -0.58 -24.40 15.93 -4.16 -0.07 -24.47 16 12 N -0.69 -24.93 4.95 -443.62 -2.19 -27.13 16 13 C 0.12 4.04 4.28 45.52 0.19 4.24 16 14 H 0.10 3.07 7.54 -2.39 -0.02 3.05 16 15 C -0.15 -4.86 7.58 31.18 0.24 -4.62 16 16 C 0.15 5.30 4.54 45.58 0.21 5.50 16 17 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 18 N -0.72 -32.84 4.41 -320.17 -1.41 -34.25 16 19 C -0.24 -11.92 9.99 84.03 0.84 -11.08 16 20 H 0.08 3.73 7.83 -2.91 -0.02 3.71 16 21 C -0.06 -3.34 5.50 84.86 0.47 -2.87 16 22 N -0.96 -53.19 13.06 21.65 0.28 -52.91 16 23 Si 0.96 43.47 29.55 68.60 2.03 45.49 16 24 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 25 H -0.30 -13.90 7.11 99.48 0.71 -13.20 16 26 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 27 C -0.16 -4.93 7.61 31.12 0.24 -4.69 16 28 C -0.11 -3.70 6.29 -20.09 -0.13 -3.83 16 29 C -0.09 -2.58 9.53 22.39 0.21 -2.37 16 30 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.04 0.70 8.14 -2.38 -0.02 0.69 16 32 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.07 1.14 8.08 -2.39 -0.02 1.12 16 34 H 0.10 1.02 8.09 -2.38 -0.02 1.00 16 35 H 0.18 1.66 8.06 -2.91 -0.02 1.63 16 36 H 0.16 2.52 8.06 -2.91 -0.02 2.50 16 37 H 0.23 7.13 7.41 -2.91 -0.02 7.11 16 38 H 0.41 15.33 6.12 -92.70 -0.57 14.76 16 39 H 0.12 3.06 8.14 -2.39 -0.02 3.05 16 40 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 41 H 0.37 18.35 7.00 -92.71 -0.65 17.71 16 42 H 0.25 13.69 8.31 -92.70 -0.77 12.92 16 43 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 44 H 0.12 2.84 8.14 -2.39 -0.02 2.82 16 45 H 0.12 3.83 7.54 -2.91 -0.02 3.81 16 Total: -1.00 -65.20 378.05 3.41 -61.79 By element: Atomic # 1 Polarization: 46.85 SS G_CDS: -0.19 Total: 46.65 kcal Atomic # 6 Polarization: -14.19 SS G_CDS: 5.00 Total: -9.19 kcal Atomic # 7 Polarization: -110.97 SS G_CDS: -3.32 Total: -114.29 kcal Atomic # 8 Polarization: -30.35 SS G_CDS: -0.11 Total: -30.46 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.49 kcal Total: -65.20 3.41 -61.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022087396.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.488 kcal (2) G-P(sol) polarization free energy of solvation -65.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.793 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds