Wall clock time and date at job start Tue Mar 31 2020 16:03:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50705 * 109.46977 * 2 1 4 4 C 1.38691 * 119.89499 * 269.97673 * 3 2 1 5 5 C 1.37841 * 120.64760 * 179.97438 * 4 3 2 6 6 C 1.38966 * 119.97659 * 0.05113 * 5 4 3 7 7 O 1.34907 * 133.11129 * 180.02562 * 6 5 4 8 8 C 1.33815 * 111.34502 * 179.69495 * 7 6 5 9 9 C 1.36050 * 109.84866 * 0.42326 * 8 7 6 10 10 C 1.47086 * 127.13632 * 179.86437 * 9 8 7 11 11 O 1.21646 * 119.99750 * 179.67876 * 10 9 8 12 12 N 1.34773 * 120.00052 * 359.40711 * 10 9 8 13 13 C 1.46506 * 119.99968 * 180.02562 * 12 10 9 14 14 C 1.52992 * 109.47161 * 179.97438 * 13 12 10 15 15 C 1.53948 * 113.74153 * 273.73785 * 14 13 12 16 16 N 1.47811 * 86.03669 * 222.08684 * 15 14 13 17 17 C 1.36939 * 134.45220 * 204.64038 * 16 15 14 18 18 H 1.08006 * 119.99713 * 179.86328 * 17 16 15 19 19 C 1.38810 * 120.00319 * 359.87137 * 17 16 15 20 20 N 1.31621 * 120.00051 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00178 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.46912 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.46728 * 119.99694 * 21 19 17 24 24 H 1.48499 * 109.47275 * 239.99987 * 21 19 17 25 25 C 1.47571 * 91.05163 * 24.54730 * 16 15 14 26 26 C 1.40226 * 119.25546 * 359.94905 * 6 5 4 27 27 C 1.37840 * 119.90136 * 90.00103 * 3 2 1 28 28 H 1.09001 * 109.47165 * 60.00229 * 1 2 3 29 29 H 1.08998 * 109.46933 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47071 * 299.99887 * 1 2 3 31 31 H 1.08999 * 109.47506 * 239.99950 * 2 1 3 32 32 H 1.09001 * 109.47165 * 119.99771 * 2 1 3 33 33 H 1.07998 * 119.67503 * 0.02562 * 4 3 2 34 34 H 1.08002 * 120.01002 * 180.02562 * 5 4 3 35 35 H 1.08004 * 125.07293 * 180.28151 * 8 7 6 36 36 H 0.96998 * 120.00525 * 359.97438 * 12 10 9 37 37 H 1.09004 * 109.46587 * 299.99661 * 13 12 10 38 38 H 1.08998 * 109.47213 * 59.99069 * 13 12 10 39 39 H 1.08998 * 112.94814 * 45.32695 * 14 13 12 40 40 H 1.09008 * 113.76792 * 336.35108 * 15 14 13 41 41 H 1.09004 * 113.77336 * 107.74180 * 15 14 13 42 42 H 0.96997 * 120.00047 * 180.02562 * 20 19 17 43 43 H 1.09005 * 113.77038 * 221.15155 * 25 16 15 44 44 H 1.09003 * 113.77108 * 89.75766 * 25 16 15 45 45 H 1.07996 * 120.18320 * 0.02562 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2632 2.0724 -1.2024 5 6 2.7221 3.3721 -1.2205 6 6 2.9588 4.0416 -0.0259 7 8 3.3972 5.2842 0.2633 8 6 3.4609 5.4828 1.5851 9 6 3.0691 4.3569 2.2408 10 6 2.9973 4.1565 3.6962 11 8 2.6205 3.0907 4.1455 12 7 3.3542 5.1518 4.5319 13 6 3.2831 4.9519 5.9816 14 6 3.7404 6.2257 6.6950 15 6 5.2637 6.3072 6.9022 16 7 4.9494 6.8169 8.2536 17 6 5.6128 7.5972 9.1625 18 1 5.1503 7.8357 10.1089 19 6 6.8796 8.0820 8.8675 20 7 7.4435 7.7911 7.7142 21 14 7.7843 9.1470 10.1071 22 1 6.9398 9.3261 11.3154 23 1 9.0600 8.4889 10.4873 24 1 8.0719 10.4731 9.5038 25 6 3.6335 6.1495 8.2288 26 6 2.7245 3.3804 1.1883 27 6 2.2614 2.0687 1.1949 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 2.0808 1.5567 -2.1336 34 1 2.8980 3.8698 -2.1627 35 1 3.7783 6.3992 2.0604 36 1 3.6588 6.0002 4.1738 37 1 2.2561 4.7239 6.2669 38 1 3.9317 4.1235 6.2663 39 1 3.3065 7.1304 6.2692 40 1 5.7596 5.3365 6.9031 41 1 5.7561 7.0371 6.2595 42 1 8.3288 8.1295 7.5082 43 1 2.8265 6.7537 8.6435 44 1 3.6493 5.1323 8.6203 45 1 2.0823 1.5608 2.1310 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001031673913.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:03:48 Heat of formation + Delta-G solvation = 16.063928 kcal Electronic energy + Delta-G solvation = -26492.290484 eV Core-core repulsion = 22669.726775 eV Total energy + Delta-G solvation = -3822.563709 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.62263 -40.69363 -39.55283 -39.40491 -35.80343 -34.62826 -34.28759 -33.79856 -31.15307 -30.19710 -29.89999 -27.66558 -26.54665 -25.29047 -24.56040 -23.89996 -23.28075 -21.98440 -21.45442 -20.48094 -19.01763 -18.70471 -18.20868 -17.37666 -17.13355 -16.97580 -16.91075 -16.37545 -16.14139 -15.71238 -15.48971 -15.37794 -14.99029 -14.74071 -14.42491 -14.31559 -14.16752 -14.04296 -13.76998 -13.42943 -13.31115 -13.10644 -12.89731 -12.57084 -12.53388 -12.27524 -12.21124 -11.93872 -11.83776 -11.71675 -11.59856 -11.31734 -11.22059 -11.07878 -10.87638 -10.13496 -9.50479 -9.26875 -8.92094 -7.91431 -5.24345 -0.25394 0.25016 0.70218 1.45526 1.46355 1.56556 1.62710 2.08265 2.19462 2.46969 2.69131 3.29638 3.36287 3.38219 3.48888 3.73183 3.78422 3.85935 4.04422 4.13627 4.21865 4.30346 4.35610 4.37705 4.51879 4.52765 4.59440 4.74483 4.77971 4.81126 4.86514 4.89309 5.02039 5.09251 5.10016 5.15875 5.20235 5.25721 5.31276 5.36950 5.38786 5.54715 5.57856 5.63306 5.64705 5.94014 6.03073 6.51187 6.92444 7.15989 7.60395 8.55973 9.25686 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.024115 B = 0.002117 C = 0.002003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.835740 B =13222.274782 C =13975.789810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.082 4.082 3 C -0.091 4.091 4 C -0.088 4.088 5 C -0.097 4.097 6 C 0.021 3.979 7 O -0.182 6.182 8 C 0.099 3.901 9 C -0.265 4.265 10 C 0.586 3.414 11 O -0.582 6.582 12 N -0.707 5.707 13 C 0.144 3.856 14 C -0.113 4.113 15 C 0.165 3.835 16 N -0.646 5.646 17 C -0.233 4.233 18 H 0.083 0.917 19 C -0.069 4.069 20 N -0.953 5.953 21 Si 0.978 3.022 22 H -0.266 1.266 23 H -0.295 1.295 24 H -0.289 1.289 25 C 0.125 3.875 26 C -0.115 4.115 27 C -0.090 4.090 28 H 0.064 0.936 29 H 0.072 0.928 30 H 0.039 0.961 31 H 0.097 0.903 32 H 0.066 0.934 33 H 0.172 0.828 34 H 0.163 0.837 35 H 0.259 0.741 36 H 0.413 0.587 37 H 0.077 0.923 38 H 0.052 0.948 39 H 0.109 0.891 40 H 0.010 0.990 41 H 0.048 0.952 42 H 0.248 0.752 43 H 0.064 0.936 44 H 0.045 0.955 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.559 -9.833 -22.275 27.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.119 4.119 3 C -0.091 4.091 4 C -0.106 4.106 5 C -0.116 4.116 6 C -0.025 4.025 7 O -0.081 6.081 8 C 0.031 3.969 9 C -0.270 4.270 10 C 0.375 3.625 11 O -0.463 6.463 12 N -0.359 5.359 13 C 0.019 3.981 14 C -0.133 4.133 15 C 0.040 3.960 16 N -0.373 5.373 17 C -0.362 4.362 18 H 0.101 0.899 19 C -0.262 4.262 20 N -0.602 5.602 21 Si 0.806 3.194 22 H -0.190 1.190 23 H -0.222 1.222 24 H -0.216 1.216 25 C 0.000 4.000 26 C -0.116 4.116 27 C -0.108 4.108 28 H 0.083 0.917 29 H 0.091 0.909 30 H 0.058 0.942 31 H 0.116 0.884 32 H 0.084 0.916 33 H 0.189 0.811 34 H 0.180 0.820 35 H 0.275 0.725 36 H 0.250 0.750 37 H 0.095 0.905 38 H 0.071 0.929 39 H 0.127 0.873 40 H 0.028 0.972 41 H 0.066 0.934 42 H 0.057 0.943 43 H 0.082 0.918 44 H 0.063 0.937 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -13.528 -10.206 -22.001 27.771 hybrid contribution 1.165 0.804 1.272 1.903 sum -12.364 -9.402 -20.729 25.903 Atomic orbital electron populations 1.21745 0.94111 1.02567 1.01845 1.20586 0.96619 0.90826 1.03897 1.20149 0.99161 0.97720 0.92105 1.21229 0.97614 0.92983 0.98766 1.20358 1.01833 0.94560 0.94802 1.19916 1.03118 0.83564 0.95930 1.83869 1.69140 1.30287 1.24849 1.25245 0.93002 0.99328 0.79344 1.20963 1.16093 0.96922 0.93011 1.17354 0.76603 0.83454 0.85101 1.90740 1.49526 1.27437 1.78635 1.45718 1.66847 1.16680 1.06630 1.21217 1.01410 0.97034 0.78417 1.23409 0.96799 0.97496 0.95586 1.22287 0.92534 0.95030 0.86162 1.46426 1.17170 1.56029 1.17630 1.19471 0.98144 1.21458 0.97099 0.89902 1.25622 0.98117 1.02947 0.99505 1.69993 1.15976 1.50486 1.23780 0.85014 0.78075 0.77790 0.78481 1.18997 1.22234 1.21634 1.22697 0.88041 0.96003 0.93253 1.19688 1.04130 0.95929 0.91880 1.20549 0.98906 0.92518 0.98867 0.91690 0.90916 0.94215 0.88437 0.91564 0.81070 0.81974 0.72507 0.75020 0.90491 0.92920 0.87287 0.97246 0.93382 0.94266 0.91823 0.93696 0.86889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 9.89 71.98 0.71 -1.09 16 2 C -0.08 -1.11 6.06 29.85 0.18 -0.93 16 3 C -0.09 -1.69 5.13 -19.85 -0.10 -1.79 16 4 C -0.09 -1.24 9.67 22.28 0.22 -1.02 16 5 C -0.10 -1.56 10.06 22.35 0.22 -1.33 16 6 C 0.02 0.46 7.39 22.93 0.17 0.63 16 7 O -0.18 -3.72 10.53 -3.89 -0.04 -3.76 16 8 C 0.10 1.82 11.52 67.31 0.78 2.59 16 9 C -0.27 -6.90 6.31 -18.98 -0.12 -7.02 16 10 C 0.59 17.84 7.80 86.57 0.68 18.52 16 11 O -0.58 -22.26 16.29 -4.18 -0.07 -22.32 16 12 N -0.71 -18.48 5.55 -466.70 -2.59 -21.07 16 13 C 0.14 4.26 5.51 86.38 0.48 4.74 16 14 C -0.11 -3.78 3.93 -10.14 -0.04 -3.82 16 15 C 0.17 7.52 7.08 86.44 0.61 8.13 16 16 N -0.65 -32.68 3.70 -716.11 -2.65 -35.33 16 17 C -0.23 -13.05 10.70 84.03 0.90 -12.15 16 18 H 0.08 4.44 7.83 -2.91 -0.02 4.42 16 19 C -0.07 -3.92 5.50 84.86 0.47 -3.46 16 20 N -0.95 -56.98 11.39 21.65 0.25 -56.74 16 21 Si 0.98 45.58 29.55 68.60 2.03 47.61 16 22 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 23 H -0.30 -13.86 7.11 99.48 0.71 -13.15 16 24 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 25 C 0.13 4.81 8.51 86.49 0.74 5.54 16 26 C -0.11 -3.09 6.29 -20.10 -0.13 -3.21 16 27 C -0.09 -2.33 9.53 22.38 0.21 -2.12 16 28 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.10 0.86 8.08 -2.39 -0.02 0.84 16 32 H 0.07 1.01 8.08 -2.39 -0.02 0.99 16 33 H 0.17 1.10 8.06 -2.91 -0.02 1.08 16 34 H 0.16 1.58 8.06 -2.91 -0.02 1.56 16 35 H 0.26 2.20 7.41 -2.91 -0.02 2.17 16 36 H 0.41 8.26 7.40 -92.71 -0.69 7.58 16 37 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 38 H 0.05 1.78 7.87 -2.39 -0.02 1.76 16 39 H 0.11 3.29 8.14 -2.39 -0.02 3.27 16 40 H 0.01 0.47 7.92 -2.38 -0.02 0.45 16 41 H 0.05 2.41 7.17 -2.39 -0.02 2.39 16 42 H 0.25 14.40 8.31 -92.71 -0.77 13.62 16 43 H 0.06 2.23 8.14 -2.38 -0.02 2.21 16 44 H 0.05 1.67 8.10 -2.39 -0.02 1.65 16 45 H 0.11 3.34 7.54 -2.91 -0.02 3.32 16 Total: -1.00 -77.93 379.88 3.22 -74.71 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: 0.32 Total: 14.68 kcal Atomic # 6 Polarization: -3.75 SS G_CDS: 5.97 Total: 2.22 kcal Atomic # 7 Polarization: -108.14 SS G_CDS: -4.99 Total: -113.14 kcal Atomic # 8 Polarization: -25.97 SS G_CDS: -0.11 Total: -26.08 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.61 kcal Total: -77.93 3.22 -74.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031673913.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.775 kcal (2) G-P(sol) polarization free energy of solvation -77.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.711 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds