Wall clock time and date at job start Tue Mar 31 2020 16:03:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50704 * 109.47034 * 2 1 4 4 O 1.33804 * 125.07076 * 269.95459 * 3 2 1 5 5 C 1.34910 * 111.34709 * 180.02562 * 4 3 2 6 6 C 1.38964 * 133.11834 * 179.97438 * 5 4 3 7 7 C 1.37844 * 119.97369 * 180.02562 * 6 5 4 8 8 C 1.38685 * 120.65602 * 0.02562 * 7 6 5 9 9 C 1.37836 * 120.20186 * 0.02562 * 8 7 6 10 10 C 1.39113 * 119.62465 * 359.97438 * 9 8 7 11 11 C 1.36047 * 125.07623 * 89.99825 * 3 2 1 12 12 C 1.47084 * 127.13780 * 359.97438 * 11 3 2 13 13 O 1.21655 * 120.00073 * 269.99537 * 12 11 3 14 14 N 1.34777 * 120.00209 * 89.99536 * 12 11 3 15 15 C 1.46506 * 120.00028 * 179.97438 * 14 12 11 16 16 C 1.52999 * 109.46811 * 180.02562 * 15 14 12 17 17 C 1.53946 * 113.73945 * 273.73840 * 16 15 14 18 18 N 1.47815 * 86.03769 * 222.09015 * 17 16 15 19 19 C 1.36937 * 134.45691 * 204.65268 * 18 17 16 20 20 H 1.07996 * 120.00218 * 179.86531 * 19 18 17 21 21 C 1.38823 * 119.99861 * 359.86104 * 19 18 17 22 22 N 1.31615 * 119.99831 * 0.02562 * 21 19 18 23 23 Si 1.86793 * 119.99761 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47294 * 359.97438 * 23 21 19 25 25 H 1.48492 * 109.47283 * 119.99860 * 23 21 19 26 26 H 1.48504 * 109.46908 * 240.00360 * 23 21 19 27 27 C 1.47578 * 91.04988 * 24.55253 * 18 17 16 28 28 H 1.08998 * 109.47281 * 300.00439 * 1 2 3 29 29 H 1.09007 * 109.47208 * 60.00174 * 1 2 3 30 30 H 1.09000 * 109.47490 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.46842 * 239.99716 * 2 1 3 32 32 H 1.09002 * 109.46767 * 119.99668 * 2 1 3 33 33 H 1.08005 * 120.01545 * 0.02562 * 6 5 4 34 34 H 1.08009 * 119.67009 * 180.27566 * 7 6 5 35 35 H 1.07996 * 119.89836 * 179.97438 * 8 7 6 36 36 H 1.08001 * 120.18909 * 179.97438 * 9 8 7 37 37 H 0.96994 * 120.00102 * 0.02562 * 14 12 11 38 38 H 1.08996 * 109.46956 * 300.00450 * 15 14 12 39 39 H 1.09001 * 109.46372 * 60.00288 * 15 14 12 40 40 H 1.08993 * 112.95024 * 45.33560 * 16 15 14 41 41 H 1.08997 * 113.77670 * 336.35701 * 17 16 15 42 42 H 1.09006 * 113.76569 * 107.75387 * 17 16 15 43 43 H 0.97002 * 119.99510 * 179.97438 * 22 21 19 44 44 H 1.09007 * 113.76999 * 221.15249 * 27 18 17 45 45 H 1.08995 * 113.76914 * 89.75495 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 2.2894 2.1454 -1.0951 5 6 2.7265 3.3810 -0.7751 6 6 3.1155 4.4774 -1.5351 7 6 3.5259 5.6365 -0.9121 8 6 3.5562 5.7230 0.4717 9 6 3.1751 4.6455 1.2422 10 6 2.7592 3.4708 0.6240 11 6 2.2929 2.1580 1.1134 12 6 2.1426 1.7346 2.5139 13 8 1.0873 1.9111 3.0929 14 7 3.1740 1.1510 3.1560 15 6 3.0244 0.7298 4.5512 16 6 4.3323 0.1021 5.0373 17 6 4.4532 -1.4000 4.7227 18 7 5.0040 -1.5369 6.0876 19 6 5.8302 -2.4394 6.7024 20 1 6.0923 -2.3106 7.7421 21 6 6.3307 -3.5201 5.9892 22 7 6.0117 -3.6769 4.7219 23 14 7.4571 -4.7517 6.8280 24 1 7.6606 -4.3521 8.2438 25 1 6.8398 -6.1012 6.7780 26 1 8.7671 -4.7803 6.1292 27 6 4.3084 -0.3095 6.5206 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.0964 4.4213 -2.6135 34 1 3.8229 6.4872 -1.5077 35 1 3.8802 6.6370 0.9470 36 1 3.1991 4.7129 2.3199 37 1 4.0155 1.0106 2.6945 38 1 2.7859 1.5958 5.1685 39 1 2.2200 -0.0020 4.6254 40 1 5.2118 0.6814 4.7567 41 1 3.4940 -1.8986 4.5840 42 1 5.1701 -1.6273 3.9336 43 1 6.3618 -4.4318 4.2235 44 1 4.9098 0.3325 7.1644 45 1 3.3064 -0.4869 6.9112 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032207554.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:03:07 Heat of formation + Delta-G solvation = 40.065915 kcal Electronic energy + Delta-G solvation = -27184.517520 eV Core-core repulsion = 23362.994616 eV Total energy + Delta-G solvation = -3821.522905 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.80133 -39.43810 -38.17870 -37.94367 -34.49721 -34.36872 -32.60709 -32.12979 -30.66709 -29.30208 -28.55519 -26.07428 -24.83009 -24.60817 -23.23219 -23.05943 -21.80981 -21.36937 -20.13931 -19.05605 -17.89867 -17.26911 -16.76217 -16.60320 -16.06782 -15.82080 -15.62829 -15.18598 -14.77793 -14.44346 -14.33441 -14.16104 -14.00542 -13.66447 -13.38318 -13.19838 -12.91705 -12.73189 -12.40732 -12.36461 -12.19599 -11.77551 -11.45035 -11.40697 -11.35903 -11.10703 -11.01785 -10.75632 -10.63672 -10.32833 -10.04920 -9.80272 -9.77011 -9.45891 -8.88804 -8.87341 -8.82155 -8.36229 -6.89922 -5.79213 -3.11082 0.60874 1.07501 1.87330 2.32676 2.54487 3.32085 3.37413 3.42882 3.45221 3.46501 4.04445 4.41389 4.43432 4.65963 4.79159 4.79247 4.84003 4.95426 5.01454 5.09857 5.15929 5.24965 5.27643 5.29731 5.35252 5.56959 5.63141 5.64060 5.70186 5.80787 5.89706 5.95798 6.00566 6.02684 6.09391 6.17514 6.21222 6.33247 6.38195 6.52090 6.61006 6.71972 6.88265 7.19056 7.32709 7.52815 7.60476 7.95909 8.26456 9.02717 9.68843 10.57651 11.38072 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.015450 B = 0.002621 C = 0.002527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.808400 B =10678.345903 C =11076.891952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.056 4.056 3 C 0.093 3.907 4 O -0.183 6.183 5 C 0.050 3.950 6 C -0.104 4.104 7 C -0.097 4.097 8 C -0.130 4.130 9 C -0.071 4.071 10 C -0.096 4.096 11 C -0.223 4.223 12 C 0.590 3.410 13 O -0.534 6.534 14 N -0.711 5.711 15 C 0.129 3.871 16 C -0.154 4.154 17 C 0.169 3.831 18 N -0.613 5.613 19 C -0.222 4.222 20 H 0.080 0.920 21 C -0.009 4.009 22 N -0.921 5.921 23 Si 0.912 3.088 24 H -0.279 1.279 25 H -0.290 1.290 26 H -0.290 1.290 27 C 0.129 3.871 28 H 0.067 0.933 29 H 0.059 0.941 30 H 0.072 0.928 31 H 0.093 0.907 32 H 0.103 0.897 33 H 0.133 0.867 34 H 0.136 0.864 35 H 0.131 0.869 36 H 0.128 0.872 37 H 0.404 0.596 38 H 0.064 0.936 39 H 0.070 0.930 40 H 0.090 0.910 41 H 0.027 0.973 42 H 0.072 0.928 43 H 0.253 0.747 44 H 0.045 0.955 45 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.298 16.479 -13.959 22.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.093 4.093 3 C 0.043 3.957 4 O -0.084 6.084 5 C 0.003 3.997 6 C -0.122 4.122 7 C -0.115 4.115 8 C -0.148 4.148 9 C -0.089 4.089 10 C -0.097 4.097 11 C -0.228 4.228 12 C 0.374 3.626 13 O -0.411 6.411 14 N -0.361 5.361 15 C 0.005 3.995 16 C -0.174 4.174 17 C 0.044 3.956 18 N -0.339 5.339 19 C -0.349 4.349 20 H 0.098 0.902 21 C -0.205 4.205 22 N -0.569 5.569 23 Si 0.742 3.258 24 H -0.205 1.205 25 H -0.217 1.217 26 H -0.217 1.217 27 C 0.002 3.998 28 H 0.086 0.914 29 H 0.078 0.922 30 H 0.091 0.909 31 H 0.111 0.889 32 H 0.122 0.878 33 H 0.151 0.849 34 H 0.154 0.846 35 H 0.149 0.851 36 H 0.146 0.854 37 H 0.239 0.761 38 H 0.082 0.918 39 H 0.088 0.912 40 H 0.108 0.892 41 H 0.045 0.955 42 H 0.090 0.910 43 H 0.063 0.937 44 H 0.063 0.937 45 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -7.873 16.209 -13.746 22.664 hybrid contribution 1.000 -0.789 0.319 1.313 sum -6.873 15.420 -13.426 21.570 Atomic orbital electron populations 1.21796 0.92859 1.03077 1.03104 1.20417 0.97350 0.86191 1.05380 1.22667 0.96499 0.94078 0.82467 1.83791 1.68886 1.21946 1.33734 1.19518 1.01638 0.85311 0.93224 1.19942 1.02644 0.89883 0.99725 1.20919 0.99090 0.96710 0.94767 1.21056 1.01368 0.98685 0.93718 1.20545 0.97144 0.90867 1.00330 1.19475 1.03468 0.94097 0.92665 1.20632 1.13239 0.94787 0.94129 1.17113 0.83835 0.77377 0.84241 1.90812 1.27443 1.55388 1.67504 1.46094 1.15379 1.60356 1.14289 1.21518 0.98938 0.98982 0.80022 1.23818 0.95437 0.99230 0.98879 1.22353 0.96384 0.86940 0.89970 1.45981 1.52327 1.26822 1.08769 1.19080 1.19095 1.02019 0.94748 0.90201 1.24781 1.00918 0.98617 0.96220 1.69819 1.48197 1.31272 1.07598 0.86049 0.80118 0.81156 0.78463 1.20465 1.21742 1.21709 1.22486 0.95575 0.88807 0.92912 0.91388 0.92193 0.90918 0.88885 0.87840 0.84915 0.84644 0.85069 0.85380 0.76135 0.91792 0.91159 0.89183 0.95475 0.90972 0.93733 0.93651 0.94605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.89 37.16 0.37 -1.08 16 2 C -0.06 -0.57 6.25 -27.88 -0.17 -0.75 16 3 C 0.09 1.15 6.55 -35.09 -0.23 0.92 16 4 O -0.18 -2.28 10.53 5.34 0.06 -2.22 16 5 C 0.05 0.60 7.39 -38.56 -0.28 0.32 16 6 C -0.10 -0.96 10.06 -39.46 -0.40 -1.36 16 7 C -0.10 -0.77 10.01 -39.56 -0.40 -1.16 16 8 C -0.13 -1.14 10.04 -39.56 -0.40 -1.54 16 9 C -0.07 -0.79 10.09 -39.40 -0.40 -1.19 16 10 C -0.10 -1.24 6.39 -104.98 -0.67 -1.92 16 11 C -0.22 -3.09 6.06 -103.25 -0.63 -3.71 16 12 C 0.59 9.00 7.20 -12.67 -0.09 8.91 16 13 O -0.53 -9.87 17.11 5.23 0.09 -9.78 16 14 N -0.71 -10.02 5.55 -61.49 -0.34 -10.36 16 15 C 0.13 1.98 5.51 -4.04 -0.02 1.95 16 16 C -0.15 -2.70 3.93 -89.69 -0.35 -3.05 16 17 C 0.17 3.80 7.08 -2.84 -0.02 3.78 16 18 N -0.61 -15.51 3.70 -177.68 -0.66 -16.16 16 19 C -0.22 -6.20 10.70 -15.05 -0.16 -6.36 16 20 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 21 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 22 N -0.92 -26.95 11.39 55.49 0.63 -26.32 16 23 Si 0.91 22.02 29.55 -169.99 -5.02 17.00 16 24 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 25 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 26 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 27 C 0.13 2.56 8.51 -2.97 -0.03 2.53 16 28 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.10 1.09 7.86 -51.93 -0.41 0.69 16 33 H 0.13 0.92 8.06 -52.48 -0.42 0.50 16 34 H 0.14 0.66 8.06 -52.48 -0.42 0.24 16 35 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 36 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 37 H 0.40 5.16 8.46 -40.82 -0.35 4.82 16 38 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.07 1.15 7.88 -51.93 -0.41 0.74 16 40 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 41 H 0.03 0.63 7.92 -51.93 -0.41 0.22 16 42 H 0.07 1.79 7.16 -51.93 -0.37 1.42 16 43 H 0.25 7.15 8.31 -40.82 -0.34 6.82 16 44 H 0.05 0.85 8.14 -51.92 -0.42 0.43 16 45 H 0.04 0.69 8.10 -51.93 -0.42 0.27 16 LS Contribution 383.06 15.07 5.77 5.77 Total: -1.00 -33.72 383.06 -10.01 -43.73 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: -6.56 Total: 2.39 kcal Atomic # 6 Polarization: -0.07 SS G_CDS: -3.97 Total: -4.05 kcal Atomic # 7 Polarization: -52.47 SS G_CDS: -0.37 Total: -52.84 kcal Atomic # 8 Polarization: -12.14 SS G_CDS: 0.15 Total: -12.00 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.72 -10.01 -43.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032207554.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.796 kcal (2) G-P(sol) polarization free energy of solvation -33.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.730 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds