Wall clock time and date at job start Tue Mar 31 2020 16:03:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50704 * 109.47034 * 2 1 4 4 O 1.33804 * 125.07076 * 269.95459 * 3 2 1 5 5 C 1.34910 * 111.34709 * 180.02562 * 4 3 2 6 6 C 1.38964 * 133.11834 * 179.97438 * 5 4 3 7 7 C 1.37844 * 119.97369 * 180.02562 * 6 5 4 8 8 C 1.38685 * 120.65602 * 0.02562 * 7 6 5 9 9 C 1.37836 * 120.20186 * 0.02562 * 8 7 6 10 10 C 1.39113 * 119.62465 * 359.97438 * 9 8 7 11 11 C 1.36047 * 125.07623 * 89.99825 * 3 2 1 12 12 C 1.47084 * 127.13780 * 359.97438 * 11 3 2 13 13 O 1.21655 * 120.00073 * 269.99537 * 12 11 3 14 14 N 1.34777 * 120.00209 * 89.99536 * 12 11 3 15 15 C 1.46506 * 120.00028 * 179.97438 * 14 12 11 16 16 C 1.52999 * 109.46811 * 180.02562 * 15 14 12 17 17 C 1.53946 * 113.73945 * 273.73840 * 16 15 14 18 18 N 1.47815 * 86.03769 * 222.09015 * 17 16 15 19 19 C 1.36937 * 134.45691 * 204.65268 * 18 17 16 20 20 H 1.07996 * 120.00218 * 179.86531 * 19 18 17 21 21 C 1.38823 * 119.99861 * 359.86104 * 19 18 17 22 22 N 1.31615 * 119.99831 * 0.02562 * 21 19 18 23 23 Si 1.86793 * 119.99761 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47294 * 359.97438 * 23 21 19 25 25 H 1.48492 * 109.47283 * 119.99860 * 23 21 19 26 26 H 1.48504 * 109.46908 * 240.00360 * 23 21 19 27 27 C 1.47578 * 91.04988 * 24.55253 * 18 17 16 28 28 H 1.08998 * 109.47281 * 300.00439 * 1 2 3 29 29 H 1.09007 * 109.47208 * 60.00174 * 1 2 3 30 30 H 1.09000 * 109.47490 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.46842 * 239.99716 * 2 1 3 32 32 H 1.09002 * 109.46767 * 119.99668 * 2 1 3 33 33 H 1.08005 * 120.01545 * 0.02562 * 6 5 4 34 34 H 1.08009 * 119.67009 * 180.27566 * 7 6 5 35 35 H 1.07996 * 119.89836 * 179.97438 * 8 7 6 36 36 H 1.08001 * 120.18909 * 179.97438 * 9 8 7 37 37 H 0.96994 * 120.00102 * 0.02562 * 14 12 11 38 38 H 1.08996 * 109.46956 * 300.00450 * 15 14 12 39 39 H 1.09001 * 109.46372 * 60.00288 * 15 14 12 40 40 H 1.08993 * 112.95024 * 45.33560 * 16 15 14 41 41 H 1.08997 * 113.77670 * 336.35701 * 17 16 15 42 42 H 1.09006 * 113.76569 * 107.75387 * 17 16 15 43 43 H 0.97002 * 119.99510 * 179.97438 * 22 21 19 44 44 H 1.09007 * 113.76999 * 221.15249 * 27 18 17 45 45 H 1.08995 * 113.76914 * 89.75495 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 2.2894 2.1454 -1.0951 5 6 2.7265 3.3810 -0.7751 6 6 3.1155 4.4774 -1.5351 7 6 3.5259 5.6365 -0.9121 8 6 3.5562 5.7230 0.4717 9 6 3.1751 4.6455 1.2422 10 6 2.7592 3.4708 0.6240 11 6 2.2929 2.1580 1.1134 12 6 2.1426 1.7346 2.5139 13 8 1.0873 1.9111 3.0929 14 7 3.1740 1.1510 3.1560 15 6 3.0244 0.7298 4.5512 16 6 4.3323 0.1021 5.0373 17 6 4.4532 -1.4000 4.7227 18 7 5.0040 -1.5369 6.0876 19 6 5.8302 -2.4394 6.7024 20 1 6.0923 -2.3106 7.7421 21 6 6.3307 -3.5201 5.9892 22 7 6.0117 -3.6769 4.7219 23 14 7.4571 -4.7517 6.8280 24 1 7.6606 -4.3521 8.2438 25 1 6.8398 -6.1012 6.7780 26 1 8.7671 -4.7803 6.1292 27 6 4.3084 -0.3095 6.5206 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.0964 4.4213 -2.6135 34 1 3.8229 6.4872 -1.5077 35 1 3.8802 6.6370 0.9470 36 1 3.1991 4.7129 2.3199 37 1 4.0155 1.0106 2.6945 38 1 2.7859 1.5958 5.1685 39 1 2.2200 -0.0020 4.6254 40 1 5.2118 0.6814 4.7567 41 1 3.4940 -1.8986 4.5840 42 1 5.1701 -1.6273 3.9336 43 1 6.3618 -4.4318 4.2235 44 1 4.9098 0.3325 7.1644 45 1 3.3064 -0.4869 6.9112 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032207554.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:03:06 Heat of formation + Delta-G solvation = 19.777051 kcal Electronic energy + Delta-G solvation = -27185.397311 eV Core-core repulsion = 23362.994616 eV Total energy + Delta-G solvation = -3822.402696 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.68150 -40.75089 -39.58041 -38.92591 -35.78327 -35.36972 -34.18053 -33.38439 -31.44327 -30.69519 -29.70916 -27.73041 -26.55244 -25.53366 -24.48597 -23.87654 -23.29690 -22.21222 -21.39533 -20.46946 -18.99394 -18.70346 -18.08270 -17.62058 -17.10291 -17.01911 -16.97490 -16.45099 -16.15969 -15.70406 -15.41786 -15.21334 -15.15274 -14.85843 -14.64652 -14.40673 -14.19065 -13.90322 -13.59484 -13.31539 -13.16666 -13.10793 -12.92177 -12.89365 -12.56665 -12.55120 -12.24314 -12.17446 -11.92137 -11.85371 -11.62807 -11.37621 -11.17537 -11.05147 -10.87536 -10.15896 -9.66772 -9.21245 -8.91714 -7.90889 -5.23779 -0.19934 0.30036 0.97047 1.34823 1.45739 1.46294 1.46857 1.56614 2.16764 2.47204 2.69436 3.20589 3.29984 3.37758 3.51798 3.73628 3.86855 3.92110 4.00285 4.05094 4.11865 4.15818 4.26597 4.33581 4.37215 4.47722 4.55210 4.57521 4.75706 4.81276 4.84799 4.86312 4.88474 4.92490 5.07035 5.08014 5.20991 5.22749 5.25260 5.32791 5.34988 5.46285 5.54084 5.63756 5.63789 5.94067 6.05360 6.41060 6.92577 7.06279 7.60709 8.56285 9.26112 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.015450 B = 0.002621 C = 0.002527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.808400 B =10678.345903 C =11076.891952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.058 4.058 3 C 0.096 3.904 4 O -0.187 6.187 5 C 0.026 3.974 6 C -0.105 4.105 7 C -0.088 4.088 8 C -0.122 4.122 9 C -0.095 4.095 10 C -0.120 4.120 11 C -0.251 4.251 12 C 0.598 3.402 13 O -0.571 6.571 14 N -0.703 5.703 15 C 0.141 3.859 16 C -0.116 4.116 17 C 0.167 3.833 18 N -0.646 5.646 19 C -0.234 4.234 20 H 0.083 0.917 21 C -0.068 4.068 22 N -0.952 5.952 23 Si 0.978 3.022 24 H -0.266 1.266 25 H -0.294 1.294 26 H -0.291 1.291 27 C 0.127 3.873 28 H 0.043 0.957 29 H 0.067 0.933 30 H 0.089 0.911 31 H 0.115 0.885 32 H 0.095 0.905 33 H 0.158 0.842 34 H 0.175 0.825 35 H 0.160 0.840 36 H 0.124 0.876 37 H 0.411 0.589 38 H 0.078 0.922 39 H 0.060 0.940 40 H 0.101 0.899 41 H 0.015 0.985 42 H 0.044 0.956 43 H 0.248 0.752 44 H 0.062 0.938 45 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.694 18.385 -14.733 24.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.095 4.095 3 C 0.045 3.955 4 O -0.087 6.087 5 C -0.020 4.020 6 C -0.123 4.123 7 C -0.105 4.105 8 C -0.139 4.139 9 C -0.114 4.114 10 C -0.122 4.122 11 C -0.255 4.255 12 C 0.384 3.616 13 O -0.451 6.451 14 N -0.353 5.353 15 C 0.017 3.983 16 C -0.136 4.136 17 C 0.042 3.958 18 N -0.372 5.372 19 C -0.363 4.363 20 H 0.101 0.899 21 C -0.261 4.261 22 N -0.601 5.601 23 Si 0.806 3.194 24 H -0.190 1.190 25 H -0.221 1.221 26 H -0.218 1.218 27 C 0.002 3.998 28 H 0.062 0.938 29 H 0.086 0.914 30 H 0.108 0.892 31 H 0.133 0.867 32 H 0.113 0.887 33 H 0.175 0.825 34 H 0.193 0.807 35 H 0.178 0.822 36 H 0.142 0.858 37 H 0.247 0.753 38 H 0.096 0.904 39 H 0.078 0.922 40 H 0.120 0.880 41 H 0.033 0.967 42 H 0.062 0.938 43 H 0.057 0.943 44 H 0.080 0.920 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -7.261 18.148 -14.510 24.344 hybrid contribution 0.804 -1.268 0.538 1.595 sum -6.457 16.880 -13.973 22.844 Atomic orbital electron populations 1.21759 0.92373 1.03938 1.02253 1.20527 0.97687 0.85223 1.06041 1.22974 0.95595 0.94654 0.82246 1.83773 1.69026 1.22378 1.33562 1.19983 1.02813 0.85801 0.93382 1.20414 1.01642 0.89254 1.01015 1.21428 0.97175 0.97208 0.94727 1.21468 0.99499 0.98709 0.94258 1.20729 0.98606 0.91398 1.00623 1.19690 1.04683 0.94333 0.93444 1.20589 1.15352 0.96115 0.93445 1.17261 0.83141 0.76478 0.84739 1.90781 1.28790 1.56981 1.68531 1.45990 1.15616 1.59837 1.13850 1.21296 0.97092 0.99049 0.80857 1.23410 0.96971 0.96096 0.97109 1.22266 0.94750 0.90381 0.88445 1.46397 1.52750 1.27864 1.10201 1.19465 1.19232 1.02510 0.95070 0.89919 1.25613 1.02868 1.00639 0.96956 1.69998 1.49549 1.31687 1.08857 0.85021 0.77896 0.78408 0.78071 1.19037 1.22074 1.21764 1.22687 0.95784 0.86848 0.94458 0.93808 0.91380 0.89197 0.86665 0.88675 0.82463 0.80744 0.82214 0.85751 0.75269 0.90386 0.92158 0.88048 0.96715 0.93780 0.94294 0.91980 0.93340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.81 9.89 71.98 0.71 -2.09 16 2 C -0.06 -1.18 6.25 29.85 0.19 -1.00 16 3 C 0.10 2.41 6.55 25.18 0.16 2.58 16 4 O -0.19 -4.61 10.53 -3.83 -0.04 -4.65 16 5 C 0.03 0.62 7.39 22.93 0.17 0.79 16 6 C -0.11 -1.71 10.06 22.35 0.22 -1.48 16 7 C -0.09 -1.09 10.01 22.28 0.22 -0.86 16 8 C -0.12 -1.81 10.04 22.28 0.22 -1.59 16 9 C -0.10 -2.08 10.09 22.38 0.23 -1.86 16 10 C -0.12 -3.14 6.39 -20.09 -0.13 -3.27 16 11 C -0.25 -7.12 6.06 -18.98 -0.12 -7.23 16 12 C 0.60 18.73 7.20 86.56 0.62 19.35 16 13 O -0.57 -21.71 17.11 -4.21 -0.07 -21.78 16 14 N -0.70 -19.94 5.55 -466.68 -2.59 -22.53 16 15 C 0.14 4.25 5.51 86.38 0.48 4.72 16 16 C -0.12 -4.00 3.93 -10.13 -0.04 -4.04 16 17 C 0.17 7.67 7.08 86.44 0.61 8.28 16 18 N -0.65 -32.80 3.70 -716.04 -2.65 -35.45 16 19 C -0.23 -13.15 10.70 84.04 0.90 -12.25 16 20 H 0.08 4.45 7.83 -2.91 -0.02 4.42 16 21 C -0.07 -3.86 5.50 84.87 0.47 -3.39 16 22 N -0.95 -56.97 11.39 21.65 0.25 -56.72 16 23 Si 0.98 45.66 29.55 68.60 2.03 47.69 16 24 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 25 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 26 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 27 C 0.13 4.91 8.51 86.49 0.74 5.65 16 28 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 30 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.12 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.09 2.09 7.86 -2.39 -0.02 2.07 16 33 H 0.16 1.69 8.06 -2.91 -0.02 1.67 16 34 H 0.18 0.80 8.06 -2.91 -0.02 0.77 16 35 H 0.16 1.40 8.06 -2.91 -0.02 1.38 16 36 H 0.12 2.66 8.06 -2.91 -0.02 2.64 16 37 H 0.41 10.58 8.46 -92.71 -0.78 9.80 16 38 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 39 H 0.06 1.98 7.88 -2.39 -0.02 1.96 16 40 H 0.10 3.31 8.14 -2.39 -0.02 3.29 16 41 H 0.02 0.72 7.92 -2.39 -0.02 0.70 16 42 H 0.04 2.26 7.16 -2.38 -0.02 2.24 16 43 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 44 H 0.06 2.20 8.14 -2.38 -0.02 2.18 16 45 H 0.05 1.78 8.10 -2.39 -0.02 1.76 16 Total: -1.00 -74.68 383.06 2.80 -71.88 By element: Atomic # 1 Polarization: 19.04 SS G_CDS: 0.22 Total: 19.26 kcal Atomic # 6 Polarization: -3.35 SS G_CDS: 5.66 Total: 2.31 kcal Atomic # 7 Polarization: -109.71 SS G_CDS: -5.00 Total: -114.71 kcal Atomic # 8 Polarization: -26.32 SS G_CDS: -0.11 Total: -26.43 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.69 kcal Total: -74.68 2.80 -71.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032207554.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.661 kcal (2) G-P(sol) polarization free energy of solvation -74.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.884 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds