Wall clock time and date at job start Tue Mar 31 2020 16:01:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50701 * 109.47212 * 2 1 4 4 C 1.46245 * 126.96265 * 269.71150 * 3 2 1 5 5 C 1.39711 * 134.18385 * 0.80609 * 4 3 2 6 6 C 1.36628 * 119.70509 * 179.59106 * 5 4 3 7 7 C 1.38834 * 120.44532 * 359.67707 * 6 5 4 8 8 C 1.37800 * 120.74493 * 359.97438 * 7 6 5 9 9 C 1.39024 * 119.85177 * 0.02858 * 8 7 6 10 10 O 1.34724 * 133.23810 * 179.97438 * 9 8 7 11 11 C 1.34942 * 110.86143 * 179.97438 * 10 9 8 12 12 C 1.46986 * 125.13256 * 180.02562 * 11 10 9 13 13 O 1.21648 * 119.99863 * 179.97438 * 12 11 10 14 14 N 1.34775 * 119.99878 * 359.95774 * 12 11 10 15 15 C 1.46495 * 120.00263 * 180.02562 * 14 12 11 16 16 C 1.52995 * 109.47268 * 179.97438 * 15 14 12 17 17 C 1.53935 * 113.74767 * 273.74324 * 16 15 14 18 18 N 1.47817 * 86.03888 * 222.08449 * 17 16 15 19 19 C 1.36936 * 134.45746 * 204.64312 * 18 17 16 20 20 H 1.07991 * 119.99991 * 179.86738 * 19 18 17 21 21 C 1.38820 * 119.99788 * 359.86799 * 19 18 17 22 22 N 1.31611 * 120.00109 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 119.99619 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47202 * 59.99935 * 23 21 19 25 25 H 1.48499 * 109.46623 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47047 * 299.99818 * 23 21 19 27 27 C 1.47576 * 91.04765 * 24.54821 * 18 17 16 28 28 H 1.08996 * 109.47853 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47153 * 299.99998 * 1 2 3 30 30 H 1.08998 * 109.47533 * 59.99628 * 1 2 3 31 31 H 1.09002 * 109.47153 * 240.00002 * 2 1 3 32 32 H 1.09001 * 109.46832 * 120.00193 * 2 1 3 33 33 H 1.07997 * 120.14752 * 359.26855 * 5 4 3 34 34 H 1.08000 * 119.77534 * 179.70185 * 6 5 4 35 35 H 1.08001 * 119.62741 * 180.02562 * 7 6 5 36 36 H 1.08003 * 120.07263 * 180.02562 * 8 7 6 37 37 H 0.97004 * 119.99604 * 0.02562 * 14 12 11 38 38 H 1.08999 * 109.46844 * 300.00383 * 15 14 12 39 39 H 1.09000 * 109.46791 * 59.99875 * 15 14 12 40 40 H 1.09008 * 112.93786 * 45.33972 * 16 15 14 41 41 H 1.09007 * 113.76818 * 336.34878 * 17 16 15 42 42 H 1.08999 * 113.77304 * 107.74620 * 17 16 15 43 43 H 0.97002 * 120.00088 * 179.97438 * 22 21 19 44 44 H 1.09004 * 113.76695 * 221.14976 * 27 18 17 45 45 H 1.08998 * 113.77027 * 89.75449 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3310 2.2479 -1.1685 5 6 2.2526 2.0477 -2.5490 6 6 2.6094 3.0548 -3.4006 7 6 3.0423 4.2765 -2.9031 8 6 3.1199 4.4965 -1.5449 9 6 2.7623 3.4867 -0.6588 10 8 2.7339 3.4060 0.6857 11 6 2.3029 2.1913 1.0852 12 6 2.1515 1.7653 2.4838 13 8 1.7534 0.6444 2.7386 14 7 2.4540 2.6166 3.4840 15 6 2.3036 2.1920 4.8780 16 6 2.7112 3.3374 5.8068 17 6 4.2198 3.3831 6.1095 18 7 3.8269 3.6750 7.5043 19 6 4.4328 4.3021 8.5601 20 1 3.9166 4.3898 9.5046 21 6 5.7106 4.8252 8.4163 22 7 6.3399 4.7179 7.2654 23 14 6.5374 5.6800 9.8569 24 1 6.6644 4.7290 10.9903 25 1 7.8865 6.1463 9.4476 26 1 5.7181 6.8449 10.2777 27 6 2.5193 3.0216 7.3013 28 1 -0.3635 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.9165 1.0992 -2.9412 34 1 2.5538 2.8995 -4.4679 35 1 3.3207 5.0636 -3.5882 36 1 3.4578 5.4512 -1.1698 37 1 2.7713 3.5104 3.2808 38 1 1.2640 1.9237 5.0659 39 1 2.9414 1.3281 5.0654 40 1 2.2949 4.2983 5.5043 41 1 4.7219 2.4234 5.9862 42 1 4.7419 4.2040 5.6180 43 1 7.2327 5.0837 7.1649 44 1 1.6861 3.5545 7.7595 45 1 2.5208 1.9557 7.5288 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032217497.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:01:27 Heat of formation + Delta-G solvation = 40.587369 kcal Electronic energy + Delta-G solvation = -26941.339243 eV Core-core repulsion = 23119.838950 eV Total energy + Delta-G solvation = -3821.500293 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.73683 -39.60403 -38.14855 -37.93440 -35.27798 -34.31359 -32.20718 -31.40270 -30.62307 -29.88130 -28.63377 -26.16924 -24.82424 -24.27659 -23.64760 -22.95498 -21.96506 -20.84457 -20.10657 -19.25359 -18.08730 -17.29933 -16.79418 -16.58855 -16.47447 -15.82790 -15.24055 -15.10289 -14.70736 -14.59819 -14.27597 -14.18110 -13.84971 -13.77887 -13.33973 -13.18049 -12.94879 -12.70356 -12.51780 -12.35782 -12.27808 -11.63914 -11.44327 -11.34978 -11.30706 -11.08714 -10.99780 -10.73214 -10.61457 -10.20809 -10.14584 -9.83624 -9.79923 -9.45295 -9.02694 -8.90417 -8.80287 -8.38316 -6.89029 -5.77250 -3.09648 0.35236 1.05642 1.63264 2.30752 3.08657 3.16568 3.39469 3.39905 3.43415 3.44773 4.21953 4.26757 4.44747 4.55715 4.68110 4.76415 4.95109 5.05669 5.09915 5.14124 5.22399 5.26499 5.27129 5.34293 5.39484 5.59029 5.62229 5.79454 5.79767 5.85561 5.89671 5.96923 6.04754 6.08705 6.13400 6.16518 6.20599 6.28369 6.31987 6.47943 6.60139 6.69994 6.81197 7.20684 7.33542 7.50107 7.54487 7.97316 8.07188 9.03952 9.70302 10.58994 11.39829 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.016954 B = 0.002475 C = 0.002212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.170185 B =11310.240946 C =12654.536206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.063 4.063 3 C -0.082 4.082 4 C -0.138 4.138 5 C -0.060 4.060 6 C -0.141 4.141 7 C -0.086 4.086 8 C -0.110 4.110 9 C 0.072 3.928 10 O -0.181 6.181 11 C -0.026 4.026 12 C 0.595 3.405 13 O -0.517 6.517 14 N -0.706 5.706 15 C 0.129 3.871 16 C -0.155 4.155 17 C 0.168 3.832 18 N -0.613 5.613 19 C -0.224 4.224 20 H 0.079 0.921 21 C -0.008 4.008 22 N -0.922 5.922 23 Si 0.913 3.087 24 H -0.285 1.285 25 H -0.290 1.290 26 H -0.284 1.284 27 C 0.130 3.870 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.050 0.950 31 H 0.071 0.929 32 H 0.098 0.902 33 H 0.128 0.872 34 H 0.130 0.870 35 H 0.136 0.864 36 H 0.136 0.864 37 H 0.408 0.592 38 H 0.068 0.932 39 H 0.073 0.927 40 H 0.091 0.909 41 H 0.028 0.972 42 H 0.072 0.928 43 H 0.254 0.746 44 H 0.046 0.954 45 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.412 -4.701 -22.976 25.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.100 4.100 3 C -0.085 4.085 4 C -0.139 4.139 5 C -0.078 4.078 6 C -0.159 4.159 7 C -0.104 4.104 8 C -0.128 4.128 9 C 0.023 3.977 10 O -0.082 6.082 11 C -0.076 4.076 12 C 0.380 3.620 13 O -0.395 6.395 14 N -0.356 5.356 15 C 0.005 3.995 16 C -0.174 4.174 17 C 0.043 3.957 18 N -0.339 5.339 19 C -0.352 4.352 20 H 0.097 0.903 21 C -0.205 4.205 22 N -0.569 5.569 23 Si 0.743 3.257 24 H -0.212 1.212 25 H -0.216 1.216 26 H -0.211 1.211 27 C 0.003 3.997 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.069 0.931 31 H 0.090 0.910 32 H 0.116 0.884 33 H 0.146 0.854 34 H 0.148 0.852 35 H 0.154 0.846 36 H 0.154 0.846 37 H 0.244 0.756 38 H 0.086 0.914 39 H 0.091 0.909 40 H 0.109 0.891 41 H 0.046 0.954 42 H 0.091 0.909 43 H 0.064 0.936 44 H 0.064 0.936 45 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -10.343 -5.100 -22.369 25.166 hybrid contribution 0.829 0.889 0.619 1.364 sum -9.514 -4.211 -21.750 24.110 Atomic orbital electron populations 1.21638 0.94220 1.01901 1.01897 1.20186 0.96357 0.89561 1.03925 1.21377 1.00374 0.97304 0.89449 1.19810 1.05811 0.94006 0.94317 1.20341 0.97704 0.99491 0.90269 1.20786 1.01654 0.93465 1.00010 1.21001 0.98071 0.97592 0.93739 1.20042 1.03720 0.97863 0.91177 1.19735 1.00669 0.96129 0.81145 1.84051 1.70730 1.32584 1.20880 1.21895 1.06389 0.84288 0.94994 1.16643 0.78661 0.85054 0.81654 1.90835 1.47153 1.19159 1.82380 1.46017 1.65752 1.17190 1.06609 1.21578 1.01392 0.98393 0.78092 1.23832 1.01516 0.97149 0.94947 1.22361 0.89620 0.98660 0.85064 1.45968 1.14009 1.63662 1.10257 1.18980 0.97617 1.28094 0.90465 0.90283 1.24790 0.96859 1.01449 0.97394 1.69799 1.13746 1.50191 1.23147 0.86194 0.78656 0.79377 0.81494 1.21179 1.21554 1.21080 1.22479 0.90353 0.96002 0.90872 0.92061 0.92253 0.93118 0.91007 0.88398 0.85373 0.85210 0.84599 0.84596 0.75649 0.91412 0.90883 0.89094 0.95434 0.90932 0.93593 0.93594 0.94585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 9.89 37.16 0.37 -1.00 16 2 C -0.06 -0.69 5.86 -27.88 -0.16 -0.85 16 3 C -0.08 -1.03 5.65 -102.28 -0.58 -1.61 16 4 C -0.14 -1.61 6.37 -105.19 -0.67 -2.28 16 5 C -0.06 -0.53 10.06 -39.61 -0.40 -0.93 16 6 C -0.14 -1.04 9.98 -39.94 -0.40 -1.44 16 7 C -0.09 -0.64 10.01 -39.52 -0.40 -1.04 16 8 C -0.11 -1.04 10.07 -39.45 -0.40 -1.44 16 9 C 0.07 0.87 7.41 -38.35 -0.28 0.59 16 10 O -0.18 -2.47 10.28 2.76 0.03 -2.44 16 11 C -0.03 -0.36 7.07 -36.91 -0.26 -0.62 16 12 C 0.59 8.92 7.79 -12.72 -0.10 8.82 16 13 O -0.52 -8.59 14.62 5.24 0.08 -8.51 16 14 N -0.71 -10.18 5.55 -61.53 -0.34 -10.52 16 15 C 0.13 1.97 5.51 -4.05 -0.02 1.95 16 16 C -0.15 -2.75 3.93 -89.70 -0.35 -3.10 16 17 C 0.17 3.87 7.08 -2.84 -0.02 3.85 16 18 N -0.61 -15.70 3.70 -177.70 -0.66 -16.36 16 19 C -0.22 -6.32 10.70 -15.06 -0.16 -6.48 16 20 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 21 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 22 N -0.92 -27.38 11.39 55.49 0.63 -26.75 16 23 Si 0.91 22.22 29.55 -169.99 -5.02 17.19 16 24 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 25 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 26 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 27 C 0.13 2.59 8.51 -2.97 -0.03 2.56 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.10 1.22 6.38 -51.93 -0.33 0.89 16 33 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 34 H 0.13 0.60 8.06 -52.49 -0.42 0.18 16 35 H 0.14 0.62 8.06 -52.49 -0.42 0.20 16 36 H 0.14 1.06 8.06 -52.48 -0.42 0.64 16 37 H 0.41 5.50 8.19 -40.82 -0.33 5.16 16 38 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.07 1.19 7.87 -51.93 -0.41 0.79 16 40 H 0.09 1.57 8.14 -51.92 -0.42 1.14 16 41 H 0.03 0.66 7.92 -51.93 -0.41 0.25 16 42 H 0.07 1.84 7.17 -51.93 -0.37 1.47 16 43 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 44 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 45 H 0.04 0.69 8.10 -51.93 -0.42 0.27 16 LS Contribution 378.79 15.07 5.71 5.71 Total: -1.00 -32.80 378.79 -10.01 -42.81 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: -6.47 Total: 2.22 kcal Atomic # 6 Polarization: 0.61 SS G_CDS: -3.95 Total: -3.34 kcal Atomic # 7 Polarization: -53.26 SS G_CDS: -0.37 Total: -53.63 kcal Atomic # 8 Polarization: -11.05 SS G_CDS: 0.10 Total: -10.95 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.80 -10.01 -42.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032217497.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.394 kcal (2) G-P(sol) polarization free energy of solvation -32.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.807 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds