Wall clock time and date at job start Tue Mar 31 2020 16:01:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50701 * 109.47212 * 2 1 4 4 C 1.46245 * 126.96265 * 269.71150 * 3 2 1 5 5 C 1.39711 * 134.18385 * 0.80609 * 4 3 2 6 6 C 1.36628 * 119.70509 * 179.59106 * 5 4 3 7 7 C 1.38834 * 120.44532 * 359.67707 * 6 5 4 8 8 C 1.37800 * 120.74493 * 359.97438 * 7 6 5 9 9 C 1.39024 * 119.85177 * 0.02858 * 8 7 6 10 10 O 1.34724 * 133.23810 * 179.97438 * 9 8 7 11 11 C 1.34942 * 110.86143 * 179.97438 * 10 9 8 12 12 C 1.46986 * 125.13256 * 180.02562 * 11 10 9 13 13 O 1.21648 * 119.99863 * 179.97438 * 12 11 10 14 14 N 1.34775 * 119.99878 * 359.95774 * 12 11 10 15 15 C 1.46495 * 120.00263 * 180.02562 * 14 12 11 16 16 C 1.52995 * 109.47268 * 179.97438 * 15 14 12 17 17 C 1.53935 * 113.74767 * 273.74324 * 16 15 14 18 18 N 1.47817 * 86.03888 * 222.08449 * 17 16 15 19 19 C 1.36936 * 134.45746 * 204.64312 * 18 17 16 20 20 H 1.07991 * 119.99991 * 179.86738 * 19 18 17 21 21 C 1.38820 * 119.99788 * 359.86799 * 19 18 17 22 22 N 1.31611 * 120.00109 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 119.99619 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47202 * 59.99935 * 23 21 19 25 25 H 1.48499 * 109.46623 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47047 * 299.99818 * 23 21 19 27 27 C 1.47576 * 91.04765 * 24.54821 * 18 17 16 28 28 H 1.08996 * 109.47853 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47153 * 299.99998 * 1 2 3 30 30 H 1.08998 * 109.47533 * 59.99628 * 1 2 3 31 31 H 1.09002 * 109.47153 * 240.00002 * 2 1 3 32 32 H 1.09001 * 109.46832 * 120.00193 * 2 1 3 33 33 H 1.07997 * 120.14752 * 359.26855 * 5 4 3 34 34 H 1.08000 * 119.77534 * 179.70185 * 6 5 4 35 35 H 1.08001 * 119.62741 * 180.02562 * 7 6 5 36 36 H 1.08003 * 120.07263 * 180.02562 * 8 7 6 37 37 H 0.97004 * 119.99604 * 0.02562 * 14 12 11 38 38 H 1.08999 * 109.46844 * 300.00383 * 15 14 12 39 39 H 1.09000 * 109.46791 * 59.99875 * 15 14 12 40 40 H 1.09008 * 112.93786 * 45.33972 * 16 15 14 41 41 H 1.09007 * 113.76818 * 336.34878 * 17 16 15 42 42 H 1.08999 * 113.77304 * 107.74620 * 17 16 15 43 43 H 0.97002 * 120.00088 * 179.97438 * 22 21 19 44 44 H 1.09004 * 113.76695 * 221.14976 * 27 18 17 45 45 H 1.08998 * 113.77027 * 89.75449 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3310 2.2479 -1.1685 5 6 2.2526 2.0477 -2.5490 6 6 2.6094 3.0548 -3.4006 7 6 3.0423 4.2765 -2.9031 8 6 3.1199 4.4965 -1.5449 9 6 2.7623 3.4867 -0.6588 10 8 2.7339 3.4060 0.6857 11 6 2.3029 2.1913 1.0852 12 6 2.1515 1.7653 2.4838 13 8 1.7534 0.6444 2.7386 14 7 2.4540 2.6166 3.4840 15 6 2.3036 2.1920 4.8780 16 6 2.7112 3.3374 5.8068 17 6 4.2198 3.3831 6.1095 18 7 3.8269 3.6750 7.5043 19 6 4.4328 4.3021 8.5601 20 1 3.9166 4.3898 9.5046 21 6 5.7106 4.8252 8.4163 22 7 6.3399 4.7179 7.2654 23 14 6.5374 5.6800 9.8569 24 1 6.6644 4.7290 10.9903 25 1 7.8865 6.1463 9.4476 26 1 5.7181 6.8449 10.2777 27 6 2.5193 3.0216 7.3013 28 1 -0.3635 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.9165 1.0992 -2.9412 34 1 2.5538 2.8995 -4.4679 35 1 3.3207 5.0636 -3.5882 36 1 3.4578 5.4512 -1.1698 37 1 2.7713 3.5104 3.2808 38 1 1.2640 1.9237 5.0659 39 1 2.9414 1.3281 5.0654 40 1 2.2949 4.2983 5.5043 41 1 4.7219 2.4234 5.9862 42 1 4.7419 4.2040 5.6180 43 1 7.2327 5.0837 7.1649 44 1 1.6861 3.5545 7.7595 45 1 2.5208 1.9557 7.5288 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032217497.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:01:26 Heat of formation + Delta-G solvation = 20.990333 kcal Electronic energy + Delta-G solvation = -26942.189034 eV Core-core repulsion = 23119.838950 eV Total energy + Delta-G solvation = -3822.350084 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.60578 -40.82609 -39.65150 -38.79404 -36.30957 -35.50567 -34.20174 -32.14130 -31.46145 -30.99426 -30.04881 -27.77256 -26.57207 -25.39945 -24.48212 -23.78244 -23.54624 -21.90928 -21.09162 -20.67164 -19.22414 -18.73667 -18.11302 -17.57441 -17.45656 -16.98022 -16.89085 -16.29962 -16.02420 -15.70700 -15.38628 -15.22281 -14.99239 -14.83649 -14.60606 -14.48091 -14.07875 -13.93770 -13.51854 -13.32503 -13.19935 -13.12329 -12.90461 -12.85720 -12.59284 -12.39777 -12.27847 -12.13914 -11.90907 -11.81682 -11.61332 -11.34730 -11.12012 -10.97647 -10.86953 -10.23417 -9.67366 -9.21629 -8.93751 -7.91706 -5.25343 -0.49511 0.34291 0.77226 1.40107 1.44235 1.47919 1.53993 1.98304 2.06518 2.46573 2.71430 3.27523 3.31711 3.38861 3.48265 3.69421 3.75474 3.89690 4.02411 4.10113 4.28665 4.31859 4.35132 4.40646 4.44129 4.50772 4.56406 4.62969 4.74791 4.81551 4.84103 4.88605 5.02605 5.05954 5.08768 5.16973 5.22538 5.25541 5.28840 5.37450 5.40984 5.48158 5.51777 5.58362 5.61856 5.92255 6.00755 6.35997 6.90334 6.91142 7.59574 8.55027 9.25007 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.016954 B = 0.002475 C = 0.002212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.170185 B =11310.240946 C =12654.536206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.064 4.064 3 C -0.074 4.074 4 C -0.160 4.160 5 C -0.064 4.064 6 C -0.135 4.135 7 C -0.072 4.072 8 C -0.128 4.128 9 C 0.044 3.956 10 O -0.197 6.197 11 C -0.060 4.060 12 C 0.597 3.403 13 O -0.539 6.539 14 N -0.706 5.706 15 C 0.141 3.859 16 C -0.118 4.118 17 C 0.165 3.835 18 N -0.646 5.646 19 C -0.237 4.237 20 H 0.085 0.915 21 C -0.070 4.070 22 N -0.954 5.954 23 Si 0.980 3.020 24 H -0.278 1.278 25 H -0.295 1.295 26 H -0.274 1.274 27 C 0.129 3.871 28 H 0.077 0.923 29 H 0.037 0.963 30 H 0.062 0.938 31 H 0.095 0.905 32 H 0.078 0.922 33 H 0.151 0.849 34 H 0.166 0.834 35 H 0.171 0.829 36 H 0.146 0.854 37 H 0.412 0.588 38 H 0.087 0.913 39 H 0.063 0.937 40 H 0.101 0.899 41 H 0.013 0.987 42 H 0.041 0.959 43 H 0.248 0.752 44 H 0.064 0.936 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.621 -4.642 -25.206 28.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.101 4.101 3 C -0.077 4.077 4 C -0.161 4.161 5 C -0.082 4.082 6 C -0.153 4.153 7 C -0.090 4.090 8 C -0.147 4.147 9 C -0.003 4.003 10 O -0.100 6.100 11 C -0.110 4.110 12 C 0.383 3.617 13 O -0.419 6.419 14 N -0.355 5.355 15 C 0.018 3.982 16 C -0.137 4.137 17 C 0.039 3.961 18 N -0.373 5.373 19 C -0.365 4.365 20 H 0.103 0.897 21 C -0.263 4.263 22 N -0.603 5.603 23 Si 0.808 3.192 24 H -0.204 1.204 25 H -0.221 1.221 26 H -0.200 1.200 27 C 0.004 3.996 28 H 0.096 0.904 29 H 0.056 0.944 30 H 0.081 0.919 31 H 0.114 0.886 32 H 0.096 0.904 33 H 0.169 0.831 34 H 0.183 0.817 35 H 0.188 0.812 36 H 0.164 0.836 37 H 0.248 0.752 38 H 0.105 0.895 39 H 0.081 0.919 40 H 0.119 0.881 41 H 0.031 0.969 42 H 0.059 0.941 43 H 0.057 0.943 44 H 0.082 0.918 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -11.591 -5.047 -24.600 27.658 hybrid contribution 1.181 0.868 1.133 1.852 sum -10.410 -4.180 -23.466 26.010 Atomic orbital electron populations 1.21594 0.93279 1.02817 1.01375 1.20247 0.97091 0.88650 1.04072 1.21737 0.98522 0.97753 0.89684 1.20026 1.07103 0.93629 0.95332 1.20715 0.97285 1.01069 0.89097 1.21267 0.99715 0.92640 1.01630 1.21507 0.95732 0.98574 0.93162 1.20410 1.04404 0.97926 0.91922 1.20296 1.01759 0.97522 0.80756 1.83985 1.71449 1.32520 1.22066 1.21684 1.09310 0.85290 0.94676 1.16758 0.78034 0.84683 0.82215 1.90808 1.48235 1.19882 1.82956 1.45938 1.65920 1.17426 1.06239 1.21353 1.02093 0.96665 0.78108 1.23423 0.97084 0.98557 0.94677 1.22267 0.92733 0.96605 0.84459 1.46398 1.16154 1.64254 1.10465 1.19414 0.97958 1.27691 0.91420 0.89739 1.25668 0.97743 1.02848 1.00028 1.70001 1.13658 1.51575 1.25096 0.85126 0.77173 0.78485 0.78399 1.20413 1.22079 1.19994 1.22685 0.88432 0.96504 0.91961 0.90418 0.94395 0.91935 0.88640 0.90364 0.83139 0.81656 0.81160 0.83642 0.75219 0.89513 0.91908 0.88082 0.96884 0.94065 0.94314 0.91791 0.93112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.50 9.89 71.98 0.71 -1.79 16 2 C -0.06 -1.35 5.86 29.85 0.17 -1.18 16 3 C -0.07 -1.87 5.65 -18.34 -0.10 -1.98 16 4 C -0.16 -3.60 6.37 -20.23 -0.13 -3.73 16 5 C -0.06 -0.96 10.06 22.25 0.22 -0.74 16 6 C -0.13 -1.46 9.98 22.04 0.22 -1.24 16 7 C -0.07 -0.84 10.01 22.31 0.22 -0.61 16 8 C -0.13 -2.29 10.07 22.35 0.23 -2.06 16 9 C 0.04 1.09 7.41 23.07 0.17 1.26 16 10 O -0.20 -5.66 10.28 -13.02 -0.13 -5.79 16 11 C -0.06 -1.76 7.07 24.00 0.17 -1.59 16 12 C 0.60 18.58 7.79 86.54 0.67 19.26 16 13 O -0.54 -18.45 14.62 -4.18 -0.06 -18.51 16 14 N -0.71 -20.90 5.55 -466.82 -2.59 -23.50 16 15 C 0.14 4.30 5.51 86.38 0.48 4.78 16 16 C -0.12 -4.17 3.93 -10.14 -0.04 -4.21 16 17 C 0.16 7.86 7.08 86.44 0.61 8.47 16 18 N -0.65 -33.53 3.70 -716.13 -2.65 -36.18 16 19 C -0.24 -13.48 10.70 84.04 0.90 -12.58 16 20 H 0.08 4.57 7.83 -2.92 -0.02 4.54 16 21 C -0.07 -4.06 5.50 84.87 0.47 -3.60 16 22 N -0.95 -58.58 11.39 21.65 0.25 -58.33 16 23 Si 0.98 46.32 29.55 68.60 2.03 48.35 16 24 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 25 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 26 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 27 C 0.13 5.05 8.51 86.49 0.74 5.78 16 28 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.08 1.99 6.38 -2.39 -0.02 1.98 16 33 H 0.15 1.51 8.06 -2.91 -0.02 1.49 16 34 H 0.17 0.64 8.06 -2.91 -0.02 0.62 16 35 H 0.17 0.78 8.06 -2.91 -0.02 0.76 16 36 H 0.15 2.17 8.06 -2.91 -0.02 2.14 16 37 H 0.41 11.57 8.19 -92.71 -0.76 10.81 16 38 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 39 H 0.06 2.07 7.87 -2.39 -0.02 2.05 16 40 H 0.10 3.42 8.14 -2.38 -0.02 3.40 16 41 H 0.01 0.66 7.92 -2.38 -0.02 0.65 16 42 H 0.04 2.20 7.17 -2.39 -0.02 2.19 16 43 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 44 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 45 H 0.05 1.87 8.10 -2.39 -0.02 1.85 16 Total: -1.00 -73.78 378.79 2.80 -70.98 By element: Atomic # 1 Polarization: 18.47 SS G_CDS: 0.25 Total: 18.72 kcal Atomic # 6 Polarization: -1.45 SS G_CDS: 5.71 Total: 4.26 kcal Atomic # 7 Polarization: -113.01 SS G_CDS: -5.00 Total: -118.01 kcal Atomic # 8 Polarization: -24.11 SS G_CDS: -0.20 Total: -24.30 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 2.03 Total: 48.35 kcal Total: -73.78 2.80 -70.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032217497.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.971 kcal (2) G-P(sol) polarization free energy of solvation -73.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.980 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds