Wall clock time and date at job start Tue Mar 31 2020 16:03:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50701 * 109.47212 * 2 1 4 4 C 1.38680 * 119.89886 * 269.72678 * 3 2 1 5 5 C 1.37847 * 120.65074 * 179.73707 * 4 3 2 6 6 C 1.38962 * 119.97559 * 0.51603 * 5 4 3 7 7 O 1.34915 * 133.11962 * 179.75990 * 6 5 4 8 8 C 1.33805 * 111.35012 * 180.02562 * 7 6 5 9 9 C 1.36055 * 109.85331 * 359.97438 * 8 7 6 10 10 C 1.47082 * 127.14059 * 180.02562 * 9 8 7 11 11 O 1.21645 * 119.99550 * 179.97438 * 10 9 8 12 12 N 1.34768 * 120.00030 * 359.97438 * 10 9 8 13 13 C 1.46502 * 119.99939 * 180.02562 * 12 10 9 14 14 C 1.53005 * 109.47231 * 179.97438 * 13 12 10 15 15 H 1.09003 * 112.96351 * 53.31414 * 14 13 12 16 16 C 1.53939 * 113.77119 * 184.99684 * 14 13 12 17 17 C 1.53941 * 86.29114 * 137.90618 * 16 14 13 18 18 N 1.47579 * 113.76769 * 281.49508 * 14 13 12 19 19 C 1.36928 * 134.49544 * 41.05453 * 18 14 13 20 20 H 1.08006 * 120.00319 * 0.02562 * 19 18 14 21 21 C 1.38819 * 120.00357 * 180.02562 * 19 18 14 22 22 N 1.31623 * 119.99439 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00262 * 180.02562 * 21 19 18 24 24 H 1.48493 * 109.47147 * 90.00199 * 23 21 19 25 25 H 1.48498 * 109.46726 * 210.00075 * 23 21 19 26 26 H 1.48500 * 109.46863 * 329.99682 * 23 21 19 27 27 C 1.40232 * 119.25503 * 359.76308 * 6 5 4 28 28 C 1.37844 * 119.89582 * 90.00041 * 3 2 1 29 29 H 1.08998 * 109.47533 * 59.99628 * 1 2 3 30 30 H 1.08996 * 109.47853 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47153 * 299.99998 * 1 2 3 32 32 H 1.09002 * 109.47153 * 240.00002 * 2 1 3 33 33 H 1.09001 * 109.46832 * 120.00193 * 2 1 3 34 34 H 1.07991 * 119.67419 * 359.97438 * 4 3 2 35 35 H 1.08002 * 120.01159 * 180.27945 * 5 4 3 36 36 H 1.08001 * 125.07235 * 180.02562 * 8 7 6 37 37 H 0.97005 * 120.00340 * 359.97438 * 12 10 9 38 38 H 1.09000 * 109.46990 * 299.99101 * 13 12 10 39 39 H 1.08997 * 109.47538 * 60.00096 * 13 12 10 40 40 H 1.08997 * 113.74459 * 252.25289 * 16 14 13 41 41 H 1.08998 * 113.74154 * 23.45696 * 16 14 13 42 42 H 1.09011 * 113.76766 * 90.69583 * 17 16 14 43 43 H 1.08998 * 113.77451 * 221.98087 * 17 16 14 44 44 H 0.96996 * 119.99508 * 180.02562 * 22 21 19 45 45 H 1.07993 * 120.18893 * 0.02562 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2682 2.0706 -1.2022 5 6 2.7226 3.3719 -1.2203 6 6 2.9589 4.0415 -0.0258 7 8 3.3978 5.2840 0.2637 8 6 3.4675 5.4804 1.5854 9 6 3.0701 4.3565 2.2411 10 6 2.9988 4.1557 3.6964 11 8 2.6216 3.0900 4.1456 12 7 3.3514 5.1524 4.5322 13 6 3.2810 4.9522 5.9818 14 6 3.7329 6.2280 6.6954 15 1 3.1931 7.1149 6.3636 16 6 3.8137 6.0873 8.2262 17 6 5.1310 6.8778 8.1292 18 7 5.1981 6.4005 6.7344 19 6 6.2124 6.1986 5.8369 20 1 5.9913 5.8306 4.8458 21 6 7.5249 6.4669 6.2008 22 7 7.7944 6.9148 7.4087 23 14 8.9084 6.1922 4.9762 24 1 9.1326 7.4353 4.1955 25 1 10.1515 5.8349 5.7058 26 1 8.5411 5.0878 4.0539 27 6 2.7251 3.3801 1.1884 28 6 2.2614 2.0686 1.1950 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3635 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 2.0904 1.5534 -2.1334 35 1 2.8985 3.8696 -2.1626 36 1 3.7902 6.3949 2.0607 37 1 3.6526 6.0021 4.1740 38 1 2.2549 4.7201 6.2670 39 1 3.9330 4.1266 6.2667 40 1 3.0227 6.6160 8.7579 41 1 3.9408 5.0595 8.5663 42 1 5.0035 7.9568 8.2187 43 1 5.9248 6.4891 8.7671 44 1 8.7114 7.1026 7.6629 45 1 2.0822 1.5606 2.1311 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038247126.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:03:56 Heat of formation + Delta-G solvation = 37.930867 kcal Electronic energy + Delta-G solvation = -27239.008312 eV Core-core repulsion = 23417.392824 eV Total energy + Delta-G solvation = -3821.615487 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.66015 -39.23050 -38.57243 -37.87040 -34.14952 -33.85096 -32.91353 -32.20199 -29.94692 -29.16207 -28.02063 -27.53900 -24.45978 -23.47926 -23.40037 -23.04100 -21.78298 -21.13910 -20.01857 -19.12398 -18.03589 -17.30726 -16.66917 -16.37833 -15.92921 -15.64423 -15.34777 -15.25949 -14.69278 -14.48415 -14.27861 -13.95742 -13.71735 -13.64457 -13.39323 -13.26637 -12.96309 -12.80614 -12.68477 -11.93440 -11.78619 -11.49817 -11.45756 -11.25494 -11.14901 -11.05485 -10.95591 -10.75673 -10.58642 -10.20462 -10.08605 -9.80187 -9.75445 -9.41764 -8.83234 -8.69072 -8.62860 -8.30404 -6.93271 -5.80081 -3.12776 0.68011 1.14941 1.73286 2.53709 3.32757 3.35054 3.40848 3.42770 3.43563 3.69934 4.25449 4.39482 4.50556 4.56947 4.71268 4.86577 5.05917 5.09501 5.11817 5.17629 5.24002 5.29473 5.37616 5.46622 5.58627 5.61665 5.66378 5.70671 5.77999 5.88089 5.98193 6.03151 6.04282 6.05758 6.23483 6.29849 6.37517 6.42185 6.48433 6.58807 6.66884 6.82566 6.94004 7.21300 7.37656 7.56001 7.81492 7.94860 8.48358 9.00472 9.67532 10.55641 11.36601 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.014361 B = 0.003079 C = 0.002776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1949.282922 B = 9091.864230 C =10082.777631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.081 4.081 3 C -0.099 4.099 4 C -0.093 4.093 5 C -0.104 4.104 6 C 0.040 3.960 7 O -0.184 6.184 8 C 0.067 3.933 9 C -0.223 4.223 10 C 0.584 3.416 11 O -0.544 6.544 12 N -0.709 5.709 13 C 0.125 3.875 14 C 0.125 3.875 15 H 0.050 0.950 16 C -0.155 4.155 17 C 0.159 3.841 18 N -0.603 5.603 19 C -0.221 4.221 20 H 0.078 0.922 21 C -0.006 4.006 22 N -0.919 5.919 23 Si 0.905 3.095 24 H -0.289 1.289 25 H -0.290 1.290 26 H -0.281 1.281 27 C -0.087 4.087 28 C -0.057 4.057 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.134 0.866 35 H 0.133 0.867 36 H 0.219 0.781 37 H 0.399 0.601 38 H 0.062 0.938 39 H 0.074 0.926 40 H 0.054 0.946 41 H 0.077 0.923 42 H 0.027 0.973 43 H 0.074 0.926 44 H 0.253 0.747 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.956 -6.669 -14.330 21.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.119 4.119 3 C -0.100 4.100 4 C -0.111 4.111 5 C -0.122 4.122 6 C -0.006 4.006 7 O -0.083 6.083 8 C -0.002 4.002 9 C -0.228 4.228 10 C 0.371 3.629 11 O -0.423 6.423 12 N -0.359 5.359 13 C 0.000 4.000 14 C 0.018 3.982 15 H 0.067 0.933 16 C -0.194 4.194 17 C 0.034 3.966 18 N -0.329 5.329 19 C -0.348 4.348 20 H 0.096 0.904 21 C -0.203 4.203 22 N -0.566 5.566 23 Si 0.736 3.264 24 H -0.216 1.216 25 H -0.216 1.216 26 H -0.206 1.206 27 C -0.088 4.088 28 C -0.075 4.075 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.152 0.848 35 H 0.151 0.849 36 H 0.235 0.765 37 H 0.233 0.767 38 H 0.080 0.920 39 H 0.092 0.908 40 H 0.072 0.928 41 H 0.095 0.905 42 H 0.044 0.956 43 H 0.092 0.908 44 H 0.064 0.936 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -13.808 -7.257 -14.288 21.153 hybrid contribution 1.153 0.591 -0.689 1.468 sum -12.655 -6.666 -14.978 20.710 Atomic orbital electron populations 1.21762 0.94707 1.01699 1.02313 1.20499 0.96186 0.92103 1.03063 1.19813 1.00840 0.96839 0.92467 1.20770 0.99128 0.93200 0.97969 1.19868 1.03542 0.94335 0.94456 1.19590 1.01967 0.83459 0.95600 1.83847 1.69474 1.30394 1.24604 1.24567 0.96326 0.99482 0.79791 1.21104 1.12302 0.95071 0.94277 1.17057 0.77675 0.84118 0.84086 1.90745 1.47945 1.25778 1.77805 1.45804 1.66607 1.15951 1.07514 1.21799 1.00399 0.99959 0.77794 1.22513 0.87728 0.93876 0.94109 0.93275 1.23768 0.99584 1.01418 0.94666 1.22198 0.92803 0.94782 0.86857 1.46070 0.98952 1.75687 1.12197 1.18917 0.84935 1.37317 0.93658 0.90441 1.24757 0.97039 1.01559 0.96912 1.69816 1.18537 1.50246 1.17976 0.86220 0.82195 0.77772 0.80227 1.21610 1.21571 1.20645 1.19408 1.03160 0.95310 0.90917 1.20564 0.96275 0.92070 0.98566 0.92622 0.92381 0.92367 0.90928 0.90736 0.84839 0.84949 0.76508 0.76654 0.91963 0.90769 0.92771 0.90461 0.95551 0.90816 0.93647 0.84488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.89 37.16 0.37 -0.76 16 2 C -0.08 -0.69 6.06 -27.88 -0.17 -0.86 16 3 C -0.10 -1.09 5.13 -104.60 -0.54 -1.63 16 4 C -0.09 -0.90 9.66 -39.56 -0.38 -1.28 16 5 C -0.10 -1.11 10.06 -39.46 -0.40 -1.51 16 6 C 0.04 0.54 7.39 -38.56 -0.28 0.26 16 7 O -0.18 -2.42 10.53 5.32 0.06 -2.36 16 8 C 0.07 0.84 11.52 29.95 0.34 1.18 16 9 C -0.22 -3.44 6.31 -103.25 -0.65 -4.09 16 10 C 0.58 10.30 7.80 -12.68 -0.10 10.20 16 11 O -0.54 -11.15 16.28 5.24 0.09 -11.07 16 12 N -0.71 -11.81 5.52 -61.49 -0.34 -12.15 16 13 C 0.12 2.22 5.54 -4.04 -0.02 2.19 16 14 C 0.13 2.33 4.33 -66.87 -0.29 2.04 16 15 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 16 C -0.16 -2.77 7.86 -25.81 -0.20 -2.98 16 17 C 0.16 3.57 7.51 -2.98 -0.02 3.55 16 18 N -0.60 -14.35 3.57 -170.75 -0.61 -14.96 16 19 C -0.22 -5.81 10.51 -15.06 -0.16 -5.97 16 20 H 0.08 1.95 7.80 -52.48 -0.41 1.54 16 21 C -0.01 -0.16 5.50 -17.43 -0.10 -0.26 16 22 N -0.92 -26.70 11.39 55.49 0.63 -26.07 16 23 Si 0.91 21.86 29.55 -169.99 -5.02 16.84 16 24 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 25 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 26 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 27 C -0.09 -1.31 6.29 -104.98 -0.66 -1.97 16 28 C -0.06 -0.79 9.53 -39.40 -0.38 -1.16 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.50 8.08 -51.93 -0.42 0.08 16 33 H 0.07 0.64 8.08 -51.93 -0.42 0.23 16 34 H 0.13 0.89 8.06 -52.49 -0.42 0.46 16 35 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 36 H 0.22 1.96 7.41 -52.49 -0.39 1.57 16 37 H 0.40 5.98 7.40 -40.82 -0.30 5.68 16 38 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 40 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.08 1.37 8.10 -51.93 -0.42 0.95 16 42 H 0.03 0.60 8.14 -51.92 -0.42 0.18 16 43 H 0.07 1.86 7.16 -51.93 -0.37 1.49 16 44 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 45 H 0.14 2.02 7.54 -52.49 -0.40 1.62 16 LS Contribution 380.19 15.07 5.73 5.73 Total: -1.00 -33.14 380.19 -9.60 -42.74 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: -6.49 Total: 4.33 kcal Atomic # 6 Polarization: 0.60 SS G_CDS: -3.63 Total: -3.03 kcal Atomic # 7 Polarization: -52.86 SS G_CDS: -0.32 Total: -53.18 kcal Atomic # 8 Polarization: -13.57 SS G_CDS: 0.14 Total: -13.43 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.14 -9.60 -42.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038247126.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.668 kcal (2) G-P(sol) polarization free energy of solvation -33.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.737 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds