Wall clock time and date at job start Tue Mar 31 2020 16:03:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50693 * 109.47397 * 2 1 4 4 C 1.38687 * 119.90109 * 270.02850 * 3 2 1 5 5 C 1.37840 * 120.65571 * 179.97438 * 4 3 2 6 6 C 1.38976 * 119.97423 * 359.95145 * 5 4 3 7 7 O 1.34905 * 133.11715 * 180.02562 * 6 5 4 8 8 C 1.33813 * 111.34626 * 179.72956 * 7 6 5 9 9 C 1.36051 * 109.85194 * 0.45655 * 8 7 6 10 10 C 1.47075 * 127.13784 * 179.82883 * 9 8 7 11 11 O 1.21655 * 119.99908 * 179.68225 * 10 9 8 12 12 N 1.34773 * 120.00142 * 359.68629 * 10 9 8 13 13 C 1.46500 * 120.00055 * 179.97438 * 12 10 9 14 14 C 1.53002 * 109.47404 * 179.97438 * 13 12 10 15 15 H 1.08998 * 112.77601 * 303.72538 * 14 13 12 16 16 C 1.53495 * 113.47041 * 172.93944 * 14 13 12 17 17 C 1.53497 * 83.34454 * 219.15595 * 16 14 13 18 18 N 1.47066 * 113.46479 * 74.50242 * 14 13 12 19 19 C 1.36937 * 136.06113 * 321.64192 * 18 14 13 20 20 H 1.07995 * 120.00001 * 0.02562 * 19 18 14 21 21 C 1.38817 * 120.00320 * 179.97438 * 19 18 14 22 22 N 1.31620 * 119.99557 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 119.99975 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47441 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.47001 * 120.00359 * 23 21 19 26 26 H 1.48499 * 109.47209 * 240.00202 * 23 21 19 27 27 C 1.40232 * 119.25300 * 0.04352 * 6 5 4 28 28 C 1.37844 * 119.89926 * 89.99965 * 3 2 1 29 29 H 1.09001 * 109.46462 * 299.99400 * 1 2 3 30 30 H 1.08991 * 109.47357 * 59.99686 * 1 2 3 31 31 H 1.08995 * 109.47051 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.46733 * 240.00236 * 2 1 3 33 33 H 1.09000 * 109.47168 * 120.00874 * 2 1 3 34 34 H 1.07994 * 119.67446 * 359.97280 * 4 3 2 35 35 H 1.07996 * 120.01334 * 179.97438 * 5 4 3 36 36 H 1.08001 * 125.07197 * 180.28318 * 8 7 6 37 37 H 0.96999 * 120.00230 * 359.97438 * 12 10 9 38 38 H 1.08998 * 109.47316 * 59.99433 * 13 12 10 39 39 H 1.09006 * 109.47204 * 299.99927 * 13 12 10 40 40 H 1.09006 * 114.20556 * 332.74032 * 16 14 13 41 41 H 1.08994 * 114.20812 * 105.36675 * 16 14 13 42 42 H 1.09007 * 113.46266 * 271.28548 * 17 16 14 43 43 H 1.08993 * 113.46849 * 140.85107 * 17 16 14 44 44 H 0.96999 * 119.99537 * 179.97438 * 22 21 19 45 45 H 1.08002 * 120.18372 * 0.04706 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.2623 2.0727 -1.2023 5 6 2.7213 3.3723 -1.2204 6 6 2.9571 4.0422 -0.0258 7 8 3.3953 5.2848 0.2636 8 6 3.4587 5.4834 1.5854 9 6 3.0676 4.3573 2.2411 10 6 2.9963 4.1566 3.6963 11 8 2.6200 3.0905 4.1456 12 7 3.3477 5.1537 4.5322 13 6 3.2762 4.9540 5.9817 14 6 3.7269 6.2301 6.6953 15 1 4.7263 6.5487 6.3991 16 6 3.5259 6.1835 8.2163 17 6 3.1138 7.6500 8.0273 18 7 2.7300 7.3103 6.6488 19 6 1.8402 7.7919 5.7261 20 1 1.7721 7.3329 4.7509 21 6 1.0250 8.8694 6.0444 22 7 1.1077 9.4285 7.2330 23 14 -0.1892 9.5258 4.7858 24 1 -0.0875 8.7286 3.5371 25 1 -1.5680 9.4226 5.3275 26 1 0.1221 10.9479 4.4924 27 6 2.7238 3.3806 1.1884 28 6 2.2615 2.0685 1.1950 29 1 -0.3632 0.5138 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5140 0.8899 34 1 2.0800 1.5571 -2.1335 35 1 2.8972 3.8700 -2.1626 36 1 3.7758 6.3999 2.0608 37 1 3.6481 6.0037 4.1740 38 1 3.9284 4.1287 6.2674 39 1 2.2500 4.7213 6.2663 40 1 2.7160 5.5299 8.5403 41 1 4.4455 6.0441 8.7846 42 1 3.9500 8.3468 8.0859 43 1 2.2716 7.9481 8.6515 44 1 0.5383 10.1817 7.4553 45 1 2.0826 1.5604 2.1311 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038247128.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:03:59 Heat of formation + Delta-G solvation = 41.267301 kcal Electronic energy + Delta-G solvation = -27300.929105 eV Core-core repulsion = 23479.458297 eV Total energy + Delta-G solvation = -3821.470809 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.65059 -39.26378 -38.56452 -38.03276 -34.13503 -33.83783 -32.90374 -32.24996 -29.93740 -29.14610 -28.08578 -27.50588 -24.44073 -23.52436 -23.41822 -23.02368 -21.68583 -21.12265 -20.00370 -19.23327 -18.03619 -17.29488 -16.69020 -16.36511 -15.92074 -15.64361 -15.32544 -15.27221 -14.67924 -14.47728 -14.26802 -13.96618 -13.70147 -13.62953 -13.37792 -13.25710 -12.94929 -12.79168 -12.66420 -11.95776 -11.77438 -11.58277 -11.47687 -11.23853 -11.16258 -11.03323 -10.94666 -10.81975 -10.59687 -10.19574 -10.05822 -9.87167 -9.77049 -9.27755 -8.86628 -8.66911 -8.61950 -8.29407 -6.95152 -5.82230 -3.15110 0.68981 1.15657 1.74248 2.54874 3.33483 3.34414 3.39616 3.42356 3.44266 3.70797 4.26621 4.38162 4.51615 4.57894 4.72234 4.87829 5.09950 5.11830 5.13450 5.18828 5.25944 5.30472 5.36859 5.48117 5.53079 5.62313 5.67700 5.71939 5.79474 5.87124 6.01315 6.04163 6.05132 6.06772 6.24249 6.30034 6.36527 6.42875 6.49202 6.55980 6.67027 6.82658 6.94923 7.17929 7.34878 7.53351 7.83054 7.92302 8.49523 8.97291 9.64918 10.57531 11.34902 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.013548 B = 0.003142 C = 0.002892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2066.243772 B = 8908.465286 C = 9681.144190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.080 4.080 3 C -0.100 4.100 4 C -0.093 4.093 5 C -0.104 4.104 6 C 0.040 3.960 7 O -0.184 6.184 8 C 0.067 3.933 9 C -0.223 4.223 10 C 0.584 3.416 11 O -0.544 6.544 12 N -0.708 5.708 13 C 0.123 3.877 14 C 0.127 3.873 15 H 0.049 0.951 16 C -0.161 4.161 17 C 0.151 3.849 18 N -0.602 5.602 19 C -0.216 4.216 20 H 0.080 0.920 21 C -0.006 4.006 22 N -0.917 5.917 23 Si 0.907 3.093 24 H -0.280 1.280 25 H -0.290 1.290 26 H -0.290 1.290 27 C -0.086 4.086 28 C -0.057 4.057 29 H 0.058 0.942 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.134 0.866 35 H 0.133 0.867 36 H 0.219 0.781 37 H 0.400 0.600 38 H 0.061 0.939 39 H 0.073 0.927 40 H 0.080 0.920 41 H 0.059 0.941 42 H 0.025 0.975 43 H 0.072 0.928 44 H 0.253 0.747 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.611 -13.880 -13.905 20.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.118 4.118 3 C -0.100 4.100 4 C -0.111 4.111 5 C -0.122 4.122 6 C -0.006 4.006 7 O -0.083 6.083 8 C -0.001 4.001 9 C -0.228 4.228 10 C 0.371 3.629 11 O -0.424 6.424 12 N -0.358 5.358 13 C -0.001 4.001 14 C 0.019 3.981 15 H 0.066 0.934 16 C -0.200 4.200 17 C 0.026 3.974 18 N -0.328 5.328 19 C -0.343 4.343 20 H 0.098 0.902 21 C -0.203 4.203 22 N -0.563 5.563 23 Si 0.737 3.263 24 H -0.205 1.205 25 H -0.216 1.216 26 H -0.217 1.217 27 C -0.088 4.088 28 C -0.075 4.075 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.152 0.848 35 H 0.150 0.850 36 H 0.235 0.765 37 H 0.234 0.766 38 H 0.079 0.921 39 H 0.091 0.909 40 H 0.098 0.902 41 H 0.077 0.923 42 H 0.043 0.957 43 H 0.091 0.909 44 H 0.063 0.937 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 5.124 -14.226 -13.901 20.540 hybrid contribution -0.481 1.173 -0.673 1.435 sum 4.643 -13.053 -14.574 20.108 Atomic orbital electron populations 1.21771 0.94664 1.01712 1.02445 1.20493 0.96240 0.92073 1.02955 1.19815 1.00832 0.96866 0.92468 1.20767 0.99105 0.93246 0.97965 1.19868 1.03514 0.94360 0.94451 1.19595 1.02021 0.83410 0.95604 1.83848 1.69465 1.30385 1.24617 1.24578 0.96578 0.99169 0.79776 1.21098 1.12344 0.95062 0.94283 1.17063 0.77611 0.84181 0.84092 1.90745 1.47640 1.26172 1.77810 1.45806 1.66874 1.15634 1.07502 1.21842 1.02086 0.98299 0.77874 1.22430 0.93447 0.88483 0.93767 0.93410 1.23655 1.00388 1.00998 0.94921 1.22029 0.97464 0.90728 0.87208 1.45699 1.38951 1.34524 1.13590 1.18871 1.10809 1.10862 0.93746 0.90213 1.24774 0.99938 0.98463 0.97112 1.69836 1.41589 1.25271 1.19628 0.86126 0.81164 0.78584 0.80377 1.20495 1.21642 1.21706 1.19406 1.03171 0.95286 0.90917 1.20563 0.96267 0.92097 0.98558 0.92291 0.92583 0.92377 0.90966 0.90789 0.84845 0.84955 0.76500 0.76579 0.92071 0.90897 0.90179 0.92292 0.95719 0.90948 0.93680 0.84494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.90 37.16 0.37 -0.85 16 2 C -0.08 -0.68 6.06 -27.88 -0.17 -0.85 16 3 C -0.10 -1.10 5.13 -104.60 -0.54 -1.64 16 4 C -0.09 -0.90 9.67 -39.56 -0.38 -1.29 16 5 C -0.10 -1.12 10.06 -39.45 -0.40 -1.52 16 6 C 0.04 0.55 7.39 -38.56 -0.28 0.26 16 7 O -0.18 -2.45 10.53 5.33 0.06 -2.40 16 8 C 0.07 0.87 11.52 29.95 0.34 1.21 16 9 C -0.22 -3.49 6.31 -103.25 -0.65 -4.14 16 10 C 0.58 10.38 7.80 -12.68 -0.10 10.28 16 11 O -0.54 -11.20 16.29 5.23 0.09 -11.12 16 12 N -0.71 -11.93 5.33 -61.49 -0.33 -12.25 16 13 C 0.12 2.19 5.52 -4.04 -0.02 2.17 16 14 C 0.13 2.36 4.10 -72.40 -0.30 2.06 16 15 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 16 C -0.16 -2.85 8.03 -26.22 -0.21 -3.06 16 17 C 0.15 3.39 7.40 -8.51 -0.06 3.32 16 18 N -0.60 -14.27 3.65 -177.00 -0.65 -14.92 16 19 C -0.22 -5.64 10.55 -15.06 -0.16 -5.80 16 20 H 0.08 1.99 7.50 -52.49 -0.39 1.60 16 21 C -0.01 -0.16 5.50 -17.43 -0.10 -0.26 16 22 N -0.92 -26.54 11.51 55.49 0.64 -25.90 16 23 Si 0.91 21.75 29.55 -169.99 -5.02 16.73 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 25 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 26 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 27 C -0.09 -1.31 6.29 -104.98 -0.66 -1.97 16 28 C -0.06 -0.79 9.53 -39.40 -0.38 -1.17 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.49 8.09 -51.93 -0.42 0.07 16 33 H 0.07 0.63 8.08 -51.93 -0.42 0.21 16 34 H 0.13 0.90 8.06 -52.49 -0.42 0.47 16 35 H 0.13 1.10 8.06 -52.49 -0.42 0.67 16 36 H 0.22 2.05 7.41 -52.49 -0.39 1.66 16 37 H 0.40 6.14 7.28 -40.82 -0.30 5.84 16 38 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.07 1.49 8.14 -51.93 -0.42 1.06 16 40 H 0.08 1.43 8.12 -51.93 -0.42 1.00 16 41 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 42 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 43 H 0.07 1.82 7.12 -51.93 -0.37 1.45 16 44 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 45 H 0.14 2.03 7.54 -52.49 -0.40 1.63 16 LS Contribution 379.62 15.07 5.72 5.72 Total: -1.00 -32.90 379.62 -9.66 -42.56 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: -6.47 Total: 4.83 kcal Atomic # 6 Polarization: 0.45 SS G_CDS: -3.69 Total: -3.24 kcal Atomic # 7 Polarization: -52.74 SS G_CDS: -0.34 Total: -53.08 kcal Atomic # 8 Polarization: -13.66 SS G_CDS: 0.14 Total: -13.52 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -32.90 -9.66 -42.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038247128.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.829 kcal (2) G-P(sol) polarization free energy of solvation -32.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.561 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds