Wall clock time and date at job start Tue Mar 31 2020 16:03:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50693 * 109.47397 * 2 1 4 4 C 1.38687 * 119.90109 * 270.02850 * 3 2 1 5 5 C 1.37840 * 120.65571 * 179.97438 * 4 3 2 6 6 C 1.38976 * 119.97423 * 359.95145 * 5 4 3 7 7 O 1.34905 * 133.11715 * 180.02562 * 6 5 4 8 8 C 1.33813 * 111.34626 * 179.72956 * 7 6 5 9 9 C 1.36051 * 109.85194 * 0.45655 * 8 7 6 10 10 C 1.47075 * 127.13784 * 179.82883 * 9 8 7 11 11 O 1.21655 * 119.99908 * 179.68225 * 10 9 8 12 12 N 1.34773 * 120.00142 * 359.68629 * 10 9 8 13 13 C 1.46500 * 120.00055 * 179.97438 * 12 10 9 14 14 C 1.53002 * 109.47404 * 179.97438 * 13 12 10 15 15 H 1.08998 * 112.77601 * 303.72538 * 14 13 12 16 16 C 1.53495 * 113.47041 * 172.93944 * 14 13 12 17 17 C 1.53497 * 83.34454 * 219.15595 * 16 14 13 18 18 N 1.47066 * 113.46479 * 74.50242 * 14 13 12 19 19 C 1.36937 * 136.06113 * 321.64192 * 18 14 13 20 20 H 1.07995 * 120.00001 * 0.02562 * 19 18 14 21 21 C 1.38817 * 120.00320 * 179.97438 * 19 18 14 22 22 N 1.31620 * 119.99557 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 119.99975 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47441 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.47001 * 120.00359 * 23 21 19 26 26 H 1.48499 * 109.47209 * 240.00202 * 23 21 19 27 27 C 1.40232 * 119.25300 * 0.04352 * 6 5 4 28 28 C 1.37844 * 119.89926 * 89.99965 * 3 2 1 29 29 H 1.09001 * 109.46462 * 299.99400 * 1 2 3 30 30 H 1.08991 * 109.47357 * 59.99686 * 1 2 3 31 31 H 1.08995 * 109.47051 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.46733 * 240.00236 * 2 1 3 33 33 H 1.09000 * 109.47168 * 120.00874 * 2 1 3 34 34 H 1.07994 * 119.67446 * 359.97280 * 4 3 2 35 35 H 1.07996 * 120.01334 * 179.97438 * 5 4 3 36 36 H 1.08001 * 125.07197 * 180.28318 * 8 7 6 37 37 H 0.96999 * 120.00230 * 359.97438 * 12 10 9 38 38 H 1.08998 * 109.47316 * 59.99433 * 13 12 10 39 39 H 1.09006 * 109.47204 * 299.99927 * 13 12 10 40 40 H 1.09006 * 114.20556 * 332.74032 * 16 14 13 41 41 H 1.08994 * 114.20812 * 105.36675 * 16 14 13 42 42 H 1.09007 * 113.46266 * 271.28548 * 17 16 14 43 43 H 1.08993 * 113.46849 * 140.85107 * 17 16 14 44 44 H 0.96999 * 119.99537 * 179.97438 * 22 21 19 45 45 H 1.08002 * 120.18372 * 0.04706 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.2623 2.0727 -1.2023 5 6 2.7213 3.3723 -1.2204 6 6 2.9571 4.0422 -0.0258 7 8 3.3953 5.2848 0.2636 8 6 3.4587 5.4834 1.5854 9 6 3.0676 4.3573 2.2411 10 6 2.9963 4.1566 3.6963 11 8 2.6200 3.0905 4.1456 12 7 3.3477 5.1537 4.5322 13 6 3.2762 4.9540 5.9817 14 6 3.7269 6.2301 6.6953 15 1 4.7263 6.5487 6.3991 16 6 3.5259 6.1835 8.2163 17 6 3.1138 7.6500 8.0273 18 7 2.7300 7.3103 6.6488 19 6 1.8402 7.7919 5.7261 20 1 1.7721 7.3329 4.7509 21 6 1.0250 8.8694 6.0444 22 7 1.1077 9.4285 7.2330 23 14 -0.1892 9.5258 4.7858 24 1 -0.0875 8.7286 3.5371 25 1 -1.5680 9.4226 5.3275 26 1 0.1221 10.9479 4.4924 27 6 2.7238 3.3806 1.1884 28 6 2.2615 2.0685 1.1950 29 1 -0.3632 0.5138 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5140 0.8899 34 1 2.0800 1.5571 -2.1335 35 1 2.8972 3.8700 -2.1626 36 1 3.7758 6.3999 2.0608 37 1 3.6481 6.0037 4.1740 38 1 3.9284 4.1287 6.2674 39 1 2.2500 4.7213 6.2663 40 1 2.7160 5.5299 8.5403 41 1 4.4455 6.0441 8.7846 42 1 3.9500 8.3468 8.0859 43 1 2.2716 7.9481 8.6515 44 1 0.5383 10.1817 7.4553 45 1 2.0826 1.5604 2.1311 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038247128.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:03:58 Heat of formation + Delta-G solvation = 21.305760 kcal Electronic energy + Delta-G solvation = -27301.794703 eV Core-core repulsion = 23479.458297 eV Total energy + Delta-G solvation = -3822.336406 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.65609 -40.72614 -39.64396 -39.43215 -35.59641 -34.64883 -34.28515 -33.87424 -30.97302 -30.02431 -29.92680 -28.96229 -25.40142 -25.36035 -24.65722 -23.91928 -23.10868 -21.99751 -21.38810 -20.82501 -19.26655 -18.42939 -18.21970 -17.42116 -17.09710 -17.05801 -16.91852 -16.33055 -16.08688 -15.69357 -15.51050 -15.39215 -15.01878 -14.77773 -14.49327 -14.36214 -14.19144 -13.80384 -13.63677 -13.45417 -13.35491 -12.99869 -12.71666 -12.60680 -12.58013 -12.31403 -12.28210 -11.95779 -11.86114 -11.73376 -11.62871 -11.34690 -11.25187 -10.93410 -10.83220 -10.10499 -9.53174 -9.29779 -8.89268 -7.88032 -5.19428 -0.29076 0.22467 0.67445 1.42484 1.44928 1.52518 1.58317 2.08140 2.19812 2.46129 2.66703 3.32754 3.34314 3.39877 3.50240 3.75037 3.83909 3.91948 4.05994 4.12780 4.22600 4.28044 4.34253 4.35317 4.49406 4.50989 4.62858 4.68593 4.73620 4.79428 4.88537 4.99340 5.06399 5.07763 5.09369 5.13087 5.18057 5.29284 5.32924 5.37150 5.39351 5.55251 5.59292 5.61068 5.74556 5.97148 6.00175 6.49484 6.93596 7.14241 7.64055 8.63681 9.29832 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.013548 B = 0.003142 C = 0.002892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2066.243772 B = 8908.465286 C = 9681.144190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.080 4.080 3 C -0.091 4.091 4 C -0.086 4.086 5 C -0.097 4.097 6 C 0.020 3.980 7 O -0.182 6.182 8 C 0.094 3.906 9 C -0.264 4.264 10 C 0.584 3.416 11 O -0.583 6.583 12 N -0.704 5.704 13 C 0.132 3.868 14 C 0.135 3.865 15 H 0.074 0.926 16 C -0.136 4.136 17 C 0.143 3.857 18 N -0.629 5.629 19 C -0.205 4.205 20 H 0.088 0.912 21 C -0.070 4.070 22 N -0.953 5.953 23 Si 0.964 3.036 24 H -0.266 1.266 25 H -0.301 1.301 26 H -0.291 1.291 27 C -0.114 4.114 28 C -0.090 4.090 29 H 0.035 0.965 30 H 0.063 0.937 31 H 0.074 0.926 32 H 0.101 0.899 33 H 0.067 0.933 34 H 0.175 0.825 35 H 0.164 0.836 36 H 0.251 0.749 37 H 0.408 0.592 38 H 0.081 0.919 39 H 0.042 0.958 40 H 0.077 0.923 41 H 0.101 0.899 42 H 0.025 0.975 43 H 0.035 0.965 44 H 0.245 0.755 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.781 -14.986 -16.890 23.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.117 4.117 3 C -0.091 4.091 4 C -0.104 4.104 5 C -0.115 4.115 6 C -0.026 4.026 7 O -0.081 6.081 8 C 0.025 3.975 9 C -0.268 4.268 10 C 0.372 3.628 11 O -0.465 6.465 12 N -0.354 5.354 13 C 0.007 3.993 14 C 0.028 3.972 15 H 0.092 0.908 16 C -0.174 4.174 17 C 0.017 3.983 18 N -0.355 5.355 19 C -0.333 4.333 20 H 0.106 0.894 21 C -0.263 4.263 22 N -0.603 5.603 23 Si 0.794 3.206 24 H -0.190 1.190 25 H -0.229 1.229 26 H -0.218 1.218 27 C -0.116 4.116 28 C -0.108 4.108 29 H 0.054 0.946 30 H 0.082 0.918 31 H 0.093 0.907 32 H 0.119 0.881 33 H 0.086 0.914 34 H 0.192 0.808 35 H 0.181 0.819 36 H 0.266 0.734 37 H 0.244 0.756 38 H 0.099 0.901 39 H 0.060 0.940 40 H 0.096 0.904 41 H 0.119 0.881 42 H 0.043 0.957 43 H 0.053 0.947 44 H 0.054 0.946 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 6.329 -15.350 -16.913 23.701 hybrid contribution -0.802 1.409 0.213 1.635 sum 5.527 -13.940 -16.700 22.445 Atomic orbital electron populations 1.21758 0.94366 1.02600 1.01700 1.20580 0.96376 0.90673 1.04092 1.20170 0.99080 0.97865 0.91997 1.21247 0.97425 0.92894 0.98824 1.20375 1.01878 0.94599 0.94649 1.19979 1.03186 0.83415 0.96044 1.83856 1.69240 1.30443 1.24567 1.25099 0.93790 0.99067 0.79535 1.21023 1.15636 0.96950 0.93210 1.17375 0.76650 0.83598 0.85127 1.90714 1.49467 1.27664 1.78649 1.45726 1.66700 1.15873 1.07053 1.21649 1.00646 0.98473 0.78521 1.22576 0.93066 0.87001 0.94511 0.90849 1.23485 1.01984 0.97088 0.94859 1.22044 0.96160 0.93705 0.86376 1.46010 1.39908 1.35799 1.13811 1.19236 1.10235 1.09643 0.94213 0.89390 1.25500 1.02288 0.99722 0.98746 1.70010 1.42892 1.25972 1.21399 0.85205 0.78535 0.77936 0.78915 1.19010 1.22881 1.21844 1.19674 1.04233 0.95957 0.91691 1.20559 0.98844 0.92414 0.98982 0.94574 0.91763 0.90714 0.88100 0.91388 0.80775 0.81851 0.73367 0.75624 0.90135 0.93991 0.90440 0.88109 0.95732 0.94681 0.94606 0.86916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 9.90 71.98 0.71 -1.47 16 2 C -0.08 -1.22 6.06 29.85 0.18 -1.04 16 3 C -0.09 -1.89 5.13 -19.85 -0.10 -1.99 16 4 C -0.09 -1.40 9.67 22.28 0.22 -1.18 16 5 C -0.10 -1.81 10.06 22.35 0.22 -1.58 16 6 C 0.02 0.51 7.39 22.93 0.17 0.68 16 7 O -0.18 -4.55 10.53 -3.85 -0.04 -4.59 16 8 C 0.09 2.28 11.52 67.31 0.78 3.06 16 9 C -0.26 -8.29 6.31 -18.98 -0.12 -8.40 16 10 C 0.58 21.13 7.80 86.56 0.68 21.80 16 11 O -0.58 -25.04 16.29 -4.21 -0.07 -25.11 16 12 N -0.70 -23.28 5.33 -466.69 -2.49 -25.76 16 13 C 0.13 4.58 5.52 86.38 0.48 5.06 16 14 C 0.13 4.78 4.10 41.79 0.17 4.95 16 15 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 16 C -0.14 -4.57 8.03 30.93 0.25 -4.32 16 17 C 0.14 6.40 7.40 83.18 0.62 7.02 16 18 N -0.63 -29.68 3.65 -713.89 -2.61 -32.28 16 19 C -0.20 -10.72 10.55 84.03 0.89 -9.84 16 20 H 0.09 4.34 7.50 -2.91 -0.02 4.32 16 21 C -0.07 -3.88 5.50 84.86 0.47 -3.42 16 22 N -0.95 -56.84 11.51 21.65 0.25 -56.59 16 23 Si 0.96 45.36 29.55 68.60 2.03 47.39 16 24 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 25 H -0.30 -14.58 7.11 99.48 0.71 -13.88 16 26 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 27 C -0.11 -3.52 6.29 -20.10 -0.13 -3.64 16 28 C -0.09 -2.59 9.53 22.39 0.21 -2.38 16 29 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.10 0.98 8.09 -2.38 -0.02 0.97 16 33 H 0.07 1.12 8.08 -2.39 -0.02 1.10 16 34 H 0.17 1.40 8.06 -2.91 -0.02 1.37 16 35 H 0.16 1.99 8.06 -2.91 -0.02 1.96 16 36 H 0.25 4.07 7.41 -2.91 -0.02 4.05 16 37 H 0.41 11.95 7.28 -92.71 -0.68 11.27 16 38 H 0.08 2.51 8.14 -2.39 -0.02 2.50 16 39 H 0.04 1.73 8.14 -2.38 -0.02 1.71 16 40 H 0.08 2.67 8.12 -2.38 -0.02 2.65 16 41 H 0.10 2.62 8.14 -2.39 -0.02 2.60 16 42 H 0.02 1.10 8.14 -2.38 -0.02 1.08 16 43 H 0.03 1.82 7.12 -2.39 -0.02 1.80 16 44 H 0.24 14.34 8.31 -92.71 -0.77 13.57 16 45 H 0.11 3.68 7.54 -2.91 -0.02 3.65 16 Total: -1.00 -75.23 379.62 3.09 -72.14 By element: Atomic # 1 Polarization: 21.16 SS G_CDS: 0.33 Total: 21.49 kcal Atomic # 6 Polarization: -2.37 SS G_CDS: 5.68 Total: 3.31 kcal Atomic # 7 Polarization: -109.80 SS G_CDS: -4.84 Total: -114.64 kcal Atomic # 8 Polarization: -29.59 SS G_CDS: -0.11 Total: -29.69 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.39 kcal Total: -75.23 3.09 -72.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038247128.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.444 kcal (2) G-P(sol) polarization free energy of solvation -75.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.138 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds