Wall clock time and date at job start Tue Mar 31 2020 16:01:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50703 * 109.46890 * 2 1 4 4 C 1.46248 * 126.95759 * 269.71137 * 3 2 1 5 5 C 1.39702 * 134.18890 * 0.86984 * 4 3 2 6 6 C 1.36627 * 119.71056 * 179.52892 * 5 4 3 7 7 C 1.38844 * 120.43877 * 359.65547 * 6 5 4 8 8 C 1.37787 * 120.74699 * 359.97438 * 7 6 5 9 9 C 1.39027 * 119.85658 * 0.02562 * 8 7 6 10 10 O 1.34713 * 133.24170 * 180.02562 * 9 8 7 11 11 C 1.34951 * 110.86363 * 179.97438 * 10 9 8 12 12 C 1.46972 * 125.13170 * 180.02562 * 11 10 9 13 13 O 1.21659 * 119.99749 * 172.54742 * 12 11 10 14 14 N 1.34774 * 120.00024 * 352.54717 * 12 11 10 15 15 C 1.46489 * 120.00192 * 3.41233 * 14 12 11 16 16 C 1.46506 * 119.99833 * 183.40550 * 14 12 11 17 17 C 1.53947 * 113.74326 * 218.74118 * 16 14 12 18 18 N 1.47812 * 86.03572 * 222.08882 * 17 16 14 19 19 C 1.36937 * 134.45166 * 204.64602 * 18 17 16 20 20 H 1.08007 * 119.99592 * 174.54505 * 19 18 17 21 21 C 1.38805 * 120.00331 * 354.54225 * 19 18 17 22 22 N 1.31618 * 120.00053 * 5.01729 * 21 19 18 23 23 Si 1.86802 * 120.00355 * 185.01285 * 21 19 18 24 24 H 1.48498 * 109.46898 * 94.99569 * 23 21 19 25 25 H 1.48494 * 109.47319 * 215.00038 * 23 21 19 26 26 H 1.48499 * 109.47002 * 334.99890 * 23 21 19 27 27 C 1.47581 * 91.05294 * 24.55012 * 18 17 16 28 28 H 1.09004 * 109.46730 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46629 * 299.99918 * 1 2 3 30 30 H 1.08993 * 109.46847 * 59.99931 * 1 2 3 31 31 H 1.08992 * 109.47037 * 240.00388 * 2 1 3 32 32 H 1.08994 * 109.47291 * 119.99776 * 2 1 3 33 33 H 1.07993 * 120.14606 * 359.18292 * 5 4 3 34 34 H 1.07996 * 119.77982 * 179.67465 * 6 5 4 35 35 H 1.08007 * 119.62063 * 180.02562 * 7 6 5 36 36 H 1.08005 * 120.07357 * 180.02562 * 8 7 6 37 37 H 1.08998 * 109.47550 * 83.90966 * 15 14 12 38 38 H 1.09003 * 109.47503 * 203.90696 * 15 14 12 39 39 H 1.09002 * 109.47294 * 323.91055 * 15 14 12 40 40 H 1.08997 * 112.94837 * 350.34177 * 16 14 12 41 41 H 1.08996 * 113.76946 * 336.35608 * 17 16 14 42 42 H 1.08998 * 113.76539 * 107.74678 * 17 16 14 43 43 H 0.97000 * 120.00625 * 179.97438 * 22 21 19 44 44 H 1.09000 * 113.76925 * 221.15360 * 27 18 17 45 45 H 1.09003 * 113.76786 * 89.75308 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.3310 2.2479 -1.1686 5 6 2.2516 2.0480 -2.5490 6 6 2.6074 3.0554 -3.4006 7 6 3.0400 4.2773 -2.9031 8 6 3.1182 4.4970 -1.5451 9 6 2.7614 3.4870 -0.6588 10 8 2.7329 3.4064 0.6856 11 6 2.3031 2.1912 1.0852 12 6 2.1520 1.7654 2.4837 13 8 1.6293 0.6974 2.7412 14 7 2.5923 2.5580 3.4809 15 6 3.1534 3.8762 3.1753 16 6 2.5096 2.1013 4.8705 17 6 2.1222 3.2103 5.8654 18 7 3.1569 2.6356 6.7508 19 6 3.3682 2.6339 8.1038 20 1 4.1760 2.0525 8.5234 21 6 2.5445 3.3794 8.9359 22 7 1.5013 4.0084 8.4374 23 14 2.9162 3.4898 10.7632 24 1 3.7062 4.7177 11.0342 25 1 1.6428 3.5422 11.5251 26 1 3.6954 2.2973 11.1827 27 6 3.8690 2.0627 5.5920 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.8934 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.9157 1.0995 -2.9412 34 1 2.5514 2.9003 -4.4679 35 1 3.3177 5.0646 -3.5883 36 1 3.4558 5.4519 -1.1699 37 1 2.3453 4.6006 3.0743 38 1 3.8184 4.1840 3.9822 39 1 3.7141 3.8250 2.2419 40 1 1.9268 1.1872 4.9834 41 1 2.3535 4.2159 5.5143 42 1 1.1083 3.1170 6.2543 43 1 0.9253 4.5290 9.0189 44 1 4.2470 1.0548 5.7631 45 1 4.6146 2.7305 5.1604 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044354174.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:01:30 Heat of formation + Delta-G solvation = 58.749197 kcal Electronic energy + Delta-G solvation = -27817.374852 eV Core-core repulsion = 23996.662116 eV Total energy + Delta-G solvation = -3820.712737 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.70877 -39.75393 -38.09862 -37.67437 -35.15127 -34.31082 -32.03933 -31.34051 -30.51961 -29.51153 -27.74679 -26.70824 -24.93468 -24.85875 -23.65539 -23.02382 -22.62504 -20.62044 -19.80980 -18.73860 -17.96955 -17.12879 -16.88212 -16.60942 -16.25824 -16.11484 -15.10178 -14.85025 -14.66901 -14.49666 -14.21980 -13.86977 -13.83636 -13.78833 -13.16447 -13.05560 -12.67872 -12.47372 -12.43770 -12.27271 -11.91061 -11.86659 -11.59397 -11.40603 -11.36626 -11.21021 -10.95853 -10.89391 -10.74881 -10.32749 -10.12239 -10.08497 -9.81677 -9.59978 -8.88347 -8.83894 -8.48229 -8.12264 -6.94641 -5.83123 -3.15609 0.42576 1.10199 1.71424 2.37771 3.14702 3.22240 3.37646 3.42875 3.44467 3.44813 4.19430 4.32166 4.43916 4.60644 4.70508 4.76999 4.97882 5.09403 5.12786 5.17487 5.25565 5.36576 5.40247 5.41682 5.47392 5.50367 5.64704 5.74582 5.86261 5.88337 5.93100 5.96619 6.08463 6.11158 6.13431 6.15747 6.23451 6.29469 6.34186 6.39847 6.52777 6.68446 6.88380 7.15211 7.26368 7.46860 7.60220 7.90990 8.19323 8.98420 9.64651 10.51236 11.34427 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.023743 B = 0.002685 C = 0.002502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.012766 B =10426.820320 C =11189.990512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.060 4.060 3 C -0.087 4.087 4 C -0.136 4.136 5 C -0.061 4.061 6 C -0.142 4.142 7 C -0.088 4.088 8 C -0.110 4.110 9 C 0.062 3.938 10 O -0.174 6.174 11 C -0.019 4.019 12 C 0.590 3.410 13 O -0.517 6.517 14 N -0.585 5.585 15 C 0.073 3.927 16 C 0.088 3.912 17 C 0.160 3.840 18 N -0.605 5.605 19 C -0.224 4.224 20 H 0.083 0.917 21 C -0.006 4.006 22 N -0.918 5.918 23 Si 0.913 3.087 24 H -0.288 1.288 25 H -0.290 1.290 26 H -0.279 1.279 27 C 0.109 3.891 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.049 0.951 31 H 0.070 0.930 32 H 0.094 0.906 33 H 0.128 0.872 34 H 0.129 0.871 35 H 0.135 0.865 36 H 0.134 0.866 37 H 0.060 0.940 38 H 0.084 0.916 39 H 0.078 0.922 40 H 0.119 0.881 41 H 0.035 0.965 42 H 0.076 0.924 43 H 0.255 0.745 44 H 0.049 0.951 45 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.877 -1.180 -25.240 25.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.097 4.097 3 C -0.090 4.090 4 C -0.137 4.137 5 C -0.079 4.079 6 C -0.160 4.160 7 C -0.107 4.107 8 C -0.128 4.128 9 C 0.014 3.986 10 O -0.076 6.076 11 C -0.069 4.069 12 C 0.377 3.623 13 O -0.395 6.395 14 N -0.315 5.315 15 C -0.070 4.070 16 C -0.015 4.015 17 C 0.034 3.966 18 N -0.332 5.332 19 C -0.352 4.352 20 H 0.101 0.899 21 C -0.203 4.203 22 N -0.565 5.565 23 Si 0.743 3.257 24 H -0.216 1.216 25 H -0.216 1.216 26 H -0.205 1.205 27 C -0.018 4.018 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.068 0.932 31 H 0.088 0.912 32 H 0.113 0.887 33 H 0.145 0.855 34 H 0.147 0.853 35 H 0.152 0.848 36 H 0.152 0.848 37 H 0.078 0.922 38 H 0.102 0.898 39 H 0.096 0.904 40 H 0.137 0.863 41 H 0.053 0.947 42 H 0.094 0.906 43 H 0.065 0.935 44 H 0.067 0.933 45 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 1.610 -1.431 -24.505 24.600 hybrid contribution 0.300 0.455 0.865 1.022 sum 1.910 -0.977 -23.640 23.737 Atomic orbital electron populations 1.21639 0.94157 1.01872 1.02013 1.20130 0.96470 0.89540 1.03549 1.21361 1.00725 0.97446 0.89431 1.19812 1.05574 0.94034 0.94247 1.20340 0.97706 0.99473 0.90358 1.20768 1.01791 0.93500 0.99938 1.20979 0.98338 0.97554 0.93783 1.20002 1.03927 0.97697 0.91194 1.19887 1.00718 0.96047 0.81983 1.84368 1.70434 1.32696 1.20076 1.22008 1.05683 0.84132 0.95045 1.16848 0.79481 0.84405 0.81603 1.90832 1.44349 1.22263 1.82052 1.47998 1.59340 1.17118 1.07077 1.22021 0.99378 0.83615 1.01945 1.24231 0.99582 1.01442 0.76227 1.22637 0.96025 0.92613 0.85368 1.45684 1.25622 1.61660 1.00234 1.18996 1.12934 1.23934 0.79321 0.89943 1.24833 0.97682 0.99369 0.98376 1.69827 1.16111 1.36096 1.34435 0.86081 0.77249 0.77831 0.84510 1.21568 1.21624 1.20465 1.22983 0.93680 0.97368 0.87798 0.92142 0.91957 0.93223 0.91185 0.88735 0.85454 0.85319 0.84751 0.84782 0.92182 0.89761 0.90429 0.86272 0.94745 0.90616 0.93493 0.93303 0.94566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 9.90 37.16 0.37 -1.19 16 2 C -0.06 -0.71 5.79 -27.88 -0.16 -0.87 16 3 C -0.09 -1.16 5.64 -102.27 -0.58 -1.74 16 4 C -0.14 -1.63 6.37 -105.19 -0.67 -2.30 16 5 C -0.06 -0.56 10.06 -39.62 -0.40 -0.96 16 6 C -0.14 -1.07 9.98 -39.94 -0.40 -1.47 16 7 C -0.09 -0.66 10.01 -39.52 -0.40 -1.06 16 8 C -0.11 -1.03 10.07 -39.45 -0.40 -1.43 16 9 C 0.06 0.76 7.41 -38.35 -0.28 0.47 16 10 O -0.17 -2.39 7.13 2.77 0.02 -2.37 16 11 C -0.02 -0.28 6.73 -36.92 -0.25 -0.53 16 12 C 0.59 10.05 7.64 -12.72 -0.10 9.95 16 13 O -0.52 -9.74 14.20 5.23 0.07 -9.66 16 14 N -0.58 -10.00 3.09 -177.19 -0.55 -10.55 16 15 C 0.07 1.06 8.30 59.84 0.50 1.56 16 16 C 0.09 1.76 4.41 -70.14 -0.31 1.45 16 17 C 0.16 3.74 6.87 -2.84 -0.02 3.72 16 18 N -0.61 -15.50 3.70 -177.88 -0.66 -16.16 16 19 C -0.22 -6.27 10.70 -15.06 -0.16 -6.43 16 20 H 0.08 2.22 7.83 -52.48 -0.41 1.81 16 21 C -0.01 -0.16 5.50 -17.43 -0.10 -0.25 16 22 N -0.92 -27.07 11.48 55.49 0.64 -26.44 16 23 Si 0.91 22.03 29.56 -169.99 -5.02 17.01 16 24 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 25 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 26 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 27 C 0.11 2.26 8.43 -2.97 -0.03 2.23 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 30 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.09 1.28 6.56 -51.93 -0.34 0.94 16 33 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 34 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 35 H 0.13 0.62 8.06 -52.48 -0.42 0.20 16 36 H 0.13 0.99 8.06 -52.48 -0.42 0.57 16 37 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.08 1.26 6.13 -51.93 -0.32 0.94 16 39 H 0.08 1.02 5.40 -51.93 -0.28 0.74 16 40 H 0.12 2.52 7.20 -51.93 -0.37 2.15 16 41 H 0.03 0.80 6.69 -51.93 -0.35 0.45 16 42 H 0.08 1.98 7.31 -51.93 -0.38 1.61 16 43 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 44 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 45 H 0.04 0.71 6.93 -51.93 -0.36 0.35 16 LS Contribution 367.72 15.07 5.54 5.54 Total: -1.00 -32.02 367.72 -9.51 -41.53 By element: Atomic # 1 Polarization: 6.13 SS G_CDS: -6.17 Total: -0.05 kcal Atomic # 6 Polarization: 4.52 SS G_CDS: -3.37 Total: 1.14 kcal Atomic # 7 Polarization: -52.57 SS G_CDS: -0.57 Total: -53.14 kcal Atomic # 8 Polarization: -12.12 SS G_CDS: 0.09 Total: -12.03 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.02 -9.51 -41.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044354174.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.278 kcal (2) G-P(sol) polarization free energy of solvation -32.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.529 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds