Wall clock time and date at job start Tue Mar 31 2020 16:01:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50703 * 109.46890 * 2 1 4 4 C 1.46248 * 126.95759 * 269.71137 * 3 2 1 5 5 C 1.39702 * 134.18890 * 0.86984 * 4 3 2 6 6 C 1.36627 * 119.71056 * 179.52892 * 5 4 3 7 7 C 1.38844 * 120.43877 * 359.65547 * 6 5 4 8 8 C 1.37787 * 120.74699 * 359.97438 * 7 6 5 9 9 C 1.39027 * 119.85658 * 0.02562 * 8 7 6 10 10 O 1.34713 * 133.24170 * 180.02562 * 9 8 7 11 11 C 1.34951 * 110.86363 * 179.97438 * 10 9 8 12 12 C 1.46972 * 125.13170 * 180.02562 * 11 10 9 13 13 O 1.21659 * 119.99749 * 172.54742 * 12 11 10 14 14 N 1.34774 * 120.00024 * 352.54717 * 12 11 10 15 15 C 1.46489 * 120.00192 * 3.41233 * 14 12 11 16 16 C 1.46506 * 119.99833 * 183.40550 * 14 12 11 17 17 C 1.53947 * 113.74326 * 218.74118 * 16 14 12 18 18 N 1.47812 * 86.03572 * 222.08882 * 17 16 14 19 19 C 1.36937 * 134.45166 * 204.64602 * 18 17 16 20 20 H 1.08007 * 119.99592 * 174.54505 * 19 18 17 21 21 C 1.38805 * 120.00331 * 354.54225 * 19 18 17 22 22 N 1.31618 * 120.00053 * 5.01729 * 21 19 18 23 23 Si 1.86802 * 120.00355 * 185.01285 * 21 19 18 24 24 H 1.48498 * 109.46898 * 94.99569 * 23 21 19 25 25 H 1.48494 * 109.47319 * 215.00038 * 23 21 19 26 26 H 1.48499 * 109.47002 * 334.99890 * 23 21 19 27 27 C 1.47581 * 91.05294 * 24.55012 * 18 17 16 28 28 H 1.09004 * 109.46730 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46629 * 299.99918 * 1 2 3 30 30 H 1.08993 * 109.46847 * 59.99931 * 1 2 3 31 31 H 1.08992 * 109.47037 * 240.00388 * 2 1 3 32 32 H 1.08994 * 109.47291 * 119.99776 * 2 1 3 33 33 H 1.07993 * 120.14606 * 359.18292 * 5 4 3 34 34 H 1.07996 * 119.77982 * 179.67465 * 6 5 4 35 35 H 1.08007 * 119.62063 * 180.02562 * 7 6 5 36 36 H 1.08005 * 120.07357 * 180.02562 * 8 7 6 37 37 H 1.08998 * 109.47550 * 83.90966 * 15 14 12 38 38 H 1.09003 * 109.47503 * 203.90696 * 15 14 12 39 39 H 1.09002 * 109.47294 * 323.91055 * 15 14 12 40 40 H 1.08997 * 112.94837 * 350.34177 * 16 14 12 41 41 H 1.08996 * 113.76946 * 336.35608 * 17 16 14 42 42 H 1.08998 * 113.76539 * 107.74678 * 17 16 14 43 43 H 0.97000 * 120.00625 * 179.97438 * 22 21 19 44 44 H 1.09000 * 113.76925 * 221.15360 * 27 18 17 45 45 H 1.09003 * 113.76786 * 89.75308 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.3310 2.2479 -1.1686 5 6 2.2516 2.0480 -2.5490 6 6 2.6074 3.0554 -3.4006 7 6 3.0400 4.2773 -2.9031 8 6 3.1182 4.4970 -1.5451 9 6 2.7614 3.4870 -0.6588 10 8 2.7329 3.4064 0.6856 11 6 2.3031 2.1912 1.0852 12 6 2.1520 1.7654 2.4837 13 8 1.6293 0.6974 2.7412 14 7 2.5923 2.5580 3.4809 15 6 3.1534 3.8762 3.1753 16 6 2.5096 2.1013 4.8705 17 6 2.1222 3.2103 5.8654 18 7 3.1569 2.6356 6.7508 19 6 3.3682 2.6339 8.1038 20 1 4.1760 2.0525 8.5234 21 6 2.5445 3.3794 8.9359 22 7 1.5013 4.0084 8.4374 23 14 2.9162 3.4898 10.7632 24 1 3.7062 4.7177 11.0342 25 1 1.6428 3.5422 11.5251 26 1 3.6954 2.2973 11.1827 27 6 3.8690 2.0627 5.5920 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.8934 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.9157 1.0995 -2.9412 34 1 2.5514 2.9003 -4.4679 35 1 3.3177 5.0646 -3.5883 36 1 3.4558 5.4519 -1.1699 37 1 2.3453 4.6006 3.0743 38 1 3.8184 4.1840 3.9822 39 1 3.7141 3.8250 2.2419 40 1 1.9268 1.1872 4.9834 41 1 2.3535 4.2159 5.5143 42 1 1.1083 3.1170 6.2543 43 1 0.9253 4.5290 9.0189 44 1 4.2470 1.0548 5.7631 45 1 4.6146 2.7305 5.1604 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044354174.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:01:29 Heat of formation + Delta-G solvation = 40.956810 kcal Electronic energy + Delta-G solvation = -27818.146388 eV Core-core repulsion = 23996.662116 eV Total energy + Delta-G solvation = -3821.484272 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.62783 -41.19088 -39.37757 -38.76316 -36.34855 -35.58975 -34.05706 -32.11772 -31.30900 -30.57343 -29.51695 -28.05739 -26.68509 -26.22165 -24.67266 -24.24933 -23.62669 -21.86603 -20.80854 -20.30745 -19.12840 -18.77486 -18.02655 -17.69748 -17.66176 -17.05941 -16.87050 -16.15525 -15.89745 -15.67981 -15.32733 -15.10472 -15.00042 -14.69694 -14.63252 -14.07226 -14.00598 -13.67488 -13.53258 -13.38259 -13.25517 -13.19611 -13.05683 -12.86378 -12.79959 -12.60293 -12.33239 -12.13411 -12.08041 -11.96590 -11.81809 -11.59271 -11.16485 -10.95142 -10.90612 -9.78930 -9.63107 -9.16046 -8.99655 -7.96280 -5.30629 -0.47062 0.38125 0.79126 1.35022 1.45408 1.47388 1.56423 1.88614 1.98030 2.46280 2.74874 3.15012 3.23866 3.39562 3.51091 3.68423 3.75428 3.86534 4.11989 4.13962 4.26549 4.28691 4.33456 4.38494 4.42428 4.44256 4.51411 4.59250 4.63164 4.66625 4.79166 4.84936 4.92673 5.01422 5.06329 5.14803 5.15450 5.23072 5.30845 5.37732 5.41169 5.42863 5.50118 5.52689 5.66739 5.84175 6.05164 6.23926 6.84619 6.85507 7.53889 8.46845 9.21307 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.023743 B = 0.002685 C = 0.002502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.012766 B =10426.820320 C =11189.990512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.061 4.061 3 C -0.075 4.075 4 C -0.159 4.159 5 C -0.066 4.066 6 C -0.135 4.135 7 C -0.073 4.073 8 C -0.124 4.124 9 C 0.041 3.959 10 O -0.184 6.184 11 C -0.053 4.053 12 C 0.590 3.410 13 O -0.544 6.544 14 N -0.589 5.589 15 C 0.078 3.922 16 C 0.114 3.886 17 C 0.164 3.836 18 N -0.634 5.634 19 C -0.237 4.237 20 H 0.088 0.912 21 C -0.065 4.065 22 N -0.952 5.952 23 Si 0.983 3.017 24 H -0.285 1.285 25 H -0.294 1.294 26 H -0.266 1.266 27 C 0.116 3.884 28 H 0.076 0.924 29 H 0.032 0.968 30 H 0.063 0.937 31 H 0.098 0.902 32 H 0.073 0.927 33 H 0.148 0.852 34 H 0.164 0.836 35 H 0.171 0.829 36 H 0.150 0.850 37 H 0.063 0.937 38 H 0.080 0.920 39 H 0.095 0.905 40 H 0.104 0.896 41 H 0.037 0.963 42 H 0.039 0.961 43 H 0.251 0.749 44 H 0.058 0.942 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.085 -0.925 -28.547 28.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.098 4.098 3 C -0.078 4.078 4 C -0.160 4.160 5 C -0.083 4.083 6 C -0.153 4.153 7 C -0.091 4.091 8 C -0.142 4.142 9 C -0.007 4.007 10 O -0.087 6.087 11 C -0.103 4.103 12 C 0.379 3.621 13 O -0.424 6.424 14 N -0.319 5.319 15 C -0.064 4.064 16 C 0.010 3.990 17 C 0.037 3.963 18 N -0.361 5.361 19 C -0.365 4.365 20 H 0.106 0.894 21 C -0.258 4.258 22 N -0.600 5.600 23 Si 0.810 3.190 24 H -0.212 1.212 25 H -0.221 1.221 26 H -0.191 1.191 27 C -0.010 4.010 28 H 0.094 0.906 29 H 0.051 0.949 30 H 0.082 0.918 31 H 0.116 0.884 32 H 0.091 0.909 33 H 0.165 0.835 34 H 0.181 0.819 35 H 0.188 0.812 36 H 0.167 0.833 37 H 0.081 0.919 38 H 0.098 0.902 39 H 0.113 0.887 40 H 0.122 0.878 41 H 0.054 0.946 42 H 0.058 0.942 43 H 0.059 0.941 44 H 0.076 0.924 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.847 -1.182 -27.855 28.025 hybrid contribution -0.065 0.390 1.605 1.653 sum 2.782 -0.792 -26.250 26.409 Atomic orbital electron populations 1.21591 0.93642 1.02683 1.01209 1.20190 0.96837 0.88954 1.03817 1.21695 0.98517 0.97738 0.89840 1.19984 1.07128 0.93731 0.95120 1.20692 0.97404 1.01049 0.89199 1.21247 0.99823 0.92742 1.01508 1.21507 0.95804 0.98422 0.93352 1.20397 1.04274 0.97830 0.91739 1.20416 1.01558 0.97282 0.81429 1.84261 1.71041 1.32060 1.21313 1.21481 1.09263 0.85546 0.93963 1.17083 0.78564 0.83905 0.82530 1.90804 1.45384 1.23363 1.82855 1.47901 1.59967 1.18177 1.05872 1.22079 0.99446 0.82316 1.02535 1.23529 0.98607 0.99240 0.77627 1.22484 0.93876 0.93752 0.86161 1.45981 1.27208 1.62284 1.00659 1.19396 1.12693 1.23587 0.80824 0.89412 1.25702 0.97676 0.99562 1.02845 1.70016 1.17126 1.37146 1.35704 0.85004 0.76768 0.78143 0.79075 1.21184 1.22096 1.19052 1.23072 0.94108 0.97813 0.85983 0.90553 0.94863 0.91799 0.88391 0.90878 0.83454 0.81863 0.81164 0.83269 0.91878 0.90168 0.88712 0.87788 0.94562 0.94242 0.94055 0.92427 0.92484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.94 9.90 71.98 0.71 -2.23 16 2 C -0.06 -1.42 5.79 29.85 0.17 -1.24 16 3 C -0.07 -1.98 5.64 -18.34 -0.10 -2.09 16 4 C -0.16 -3.56 6.37 -20.23 -0.13 -3.69 16 5 C -0.07 -1.00 10.06 22.25 0.22 -0.77 16 6 C -0.14 -1.42 9.98 22.04 0.22 -1.20 16 7 C -0.07 -0.77 10.01 22.31 0.22 -0.55 16 8 C -0.12 -2.00 10.07 22.35 0.23 -1.78 16 9 C 0.04 0.95 7.41 23.07 0.17 1.12 16 10 O -0.18 -5.06 7.13 -13.01 -0.09 -5.16 16 11 C -0.05 -1.63 6.73 24.00 0.16 -1.47 16 12 C 0.59 20.97 7.64 86.53 0.66 21.63 16 13 O -0.54 -21.61 14.20 -4.22 -0.06 -21.67 16 14 N -0.59 -20.83 3.09 -832.73 -2.58 -23.40 16 15 C 0.08 2.29 8.30 127.77 1.06 3.35 16 16 C 0.11 4.73 4.41 46.75 0.21 4.94 16 17 C 0.16 8.02 6.87 86.44 0.59 8.61 16 18 N -0.63 -33.28 3.70 -716.70 -2.65 -35.93 16 19 C -0.24 -13.46 10.70 84.03 0.90 -12.56 16 20 H 0.09 4.74 7.83 -2.91 -0.02 4.72 16 21 C -0.06 -3.71 5.50 84.86 0.47 -3.24 16 22 N -0.95 -58.02 11.48 21.65 0.25 -57.77 16 23 Si 0.98 45.99 29.56 68.60 2.03 48.02 16 24 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 25 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 26 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 27 C 0.12 4.86 8.43 86.49 0.73 5.59 16 28 H 0.08 1.40 8.14 -2.39 -0.02 1.39 16 29 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.07 2.04 6.56 -2.39 -0.02 2.02 16 33 H 0.15 1.57 8.06 -2.91 -0.02 1.55 16 34 H 0.16 0.62 8.06 -2.91 -0.02 0.60 16 35 H 0.17 0.59 8.06 -2.91 -0.02 0.57 16 36 H 0.15 1.84 8.06 -2.91 -0.02 1.82 16 37 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.08 2.41 6.13 -2.39 -0.01 2.40 16 39 H 0.09 2.49 5.40 -2.39 -0.01 2.48 16 40 H 0.10 4.64 7.20 -2.39 -0.02 4.63 16 41 H 0.04 1.76 6.69 -2.39 -0.02 1.74 16 42 H 0.04 2.20 7.31 -2.39 -0.02 2.18 16 43 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 44 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 45 H 0.06 2.19 6.93 -2.39 -0.02 2.18 16 Total: -1.00 -72.34 367.72 4.39 -67.95 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: 1.01 Total: 13.54 kcal Atomic # 6 Polarization: 7.92 SS G_CDS: 6.49 Total: 14.42 kcal Atomic # 7 Polarization: -112.12 SS G_CDS: -4.98 Total: -117.10 kcal Atomic # 8 Polarization: -26.67 SS G_CDS: -0.15 Total: -26.82 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.02 kcal Total: -72.34 4.39 -67.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044354174.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.903 kcal (2) G-P(sol) polarization free energy of solvation -72.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.946 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds