Wall clock time and date at job start Tue Mar 31 2020 15:27:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46498 * 109.46337 * 2 1 4 4 C 1.34778 * 120.00123 * 60.02052 * 3 2 1 5 5 O 1.21647 * 120.00094 * 359.73138 * 4 3 2 6 6 C 1.47076 * 119.99809 * 180.02562 * 4 3 2 7 7 C 1.36051 * 127.14505 * 359.41393 * 6 4 3 8 8 O 1.33804 * 109.85568 * 179.88391 * 7 6 4 9 9 C 1.34912 * 111.34612 * 0.39756 * 8 7 6 10 10 C 1.38963 * 133.11419 * 179.78489 * 9 8 7 11 11 C 1.37844 * 119.97553 * 179.97438 * 10 9 8 12 12 C 1.38693 * 120.65084 * 359.97438 * 11 10 9 13 13 C 1.37840 * 120.20107 * 0.02562 * 12 11 10 14 14 C 1.39115 * 119.62901 * 359.95774 * 13 12 11 15 15 C 1.53048 * 109.44704 * 119.96517 * 2 1 3 16 16 C 1.53190 * 109.31219 * 181.37839 * 15 2 1 17 17 N 1.46927 * 108.77574 * 305.36611 * 16 15 2 18 18 C 1.36942 * 120.62858 * 233.63118 * 17 16 15 19 19 H 1.07998 * 119.99941 * 27.65487 * 18 17 16 20 20 C 1.38809 * 120.00103 * 207.65803 * 18 17 16 21 21 N 1.31618 * 119.99974 * 17.37026 * 20 18 17 22 22 Si 1.86795 * 120.00199 * 197.37405 * 20 18 17 23 23 H 1.48502 * 109.47313 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47282 * 119.99835 * 22 20 18 25 25 H 1.48500 * 109.47106 * 239.99913 * 22 20 18 26 26 C 1.46926 * 118.74147 * 53.60660 * 17 16 15 27 27 C 1.53043 * 109.45957 * 240.02087 * 2 1 3 28 28 H 1.09003 * 109.47541 * 60.00256 * 1 2 3 29 29 H 1.09000 * 109.47160 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47230 * 300.00282 * 1 2 3 31 31 H 0.97003 * 119.99579 * 240.03372 * 3 2 1 32 32 H 1.08006 * 125.06849 * 0.03200 * 7 6 4 33 33 H 1.08001 * 120.01799 * 359.94700 * 10 9 8 34 34 H 1.07996 * 119.67694 * 179.97438 * 11 10 9 35 35 H 1.07998 * 119.89753 * 180.02562 * 12 11 10 36 36 H 1.08000 * 120.18680 * 180.02562 * 13 12 11 37 37 H 1.08998 * 109.49257 * 301.32798 * 15 2 1 38 38 H 1.08997 * 109.49678 * 61.42302 * 15 2 1 39 39 H 1.08999 * 109.59017 * 185.57685 * 16 15 2 40 40 H 1.09008 * 109.70405 * 65.21632 * 16 15 2 41 41 H 0.97002 * 120.00270 * 179.97438 * 21 20 18 42 42 H 1.09005 * 109.58654 * 186.60885 * 26 17 16 43 43 H 1.08992 * 109.70105 * 66.24975 * 26 17 16 44 44 H 1.08997 * 109.50126 * 298.58131 * 27 2 1 45 45 H 1.08998 * 109.49355 * 58.65193 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0181 1.3813 0.0000 4 6 1.6927 2.2110 1.0110 5 8 0.9897 1.8144 1.9211 6 6 2.1823 3.5979 1.0107 7 6 2.9756 4.1888 0.0766 8 8 3.2083 5.4616 0.4174 9 6 2.6007 5.7776 1.5798 10 6 2.5440 6.9422 2.3359 11 6 1.8245 6.9658 3.5114 12 6 1.1519 5.8356 3.9515 13 6 1.1966 4.6713 3.2150 14 6 1.9195 4.6364 2.0269 15 6 2.0395 -0.7208 1.2503 16 6 3.5710 -0.6890 1.2646 17 7 4.0675 -1.2494 0.0005 18 6 4.9752 -2.2748 0.0007 19 1 5.0078 -2.9669 0.8291 20 6 5.8534 -2.4245 -1.0638 21 7 6.0602 -1.4229 -1.8923 22 14 6.7417 -4.0475 -1.3206 23 1 6.3392 -5.0055 -0.2596 24 1 6.3842 -4.6025 -2.6508 25 1 8.2085 -3.8248 -1.2552 26 6 3.5713 -0.6891 -1.2639 27 6 2.0398 -0.7210 -1.2499 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 2.5753 1.6987 -0.7278 32 1 3.3583 3.7036 -0.8093 33 1 3.0639 7.8284 2.0029 34 1 1.7840 7.8733 4.0954 35 1 0.5915 5.8678 4.8741 36 1 0.6724 3.7914 3.5577 37 1 1.6568 -0.2206 2.1399 38 1 1.6972 -1.7556 1.2385 39 1 3.9411 -1.2849 2.0989 40 1 3.9162 0.3397 1.3688 41 1 6.6741 -1.5274 -2.6360 42 1 3.9416 -1.2853 -2.0980 43 1 3.9144 0.3400 -1.3696 44 1 1.6975 -1.7558 -1.2381 45 1 1.6569 -0.2213 -2.1397 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045651950.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:27:26 Heat of formation + Delta-G solvation = 17.716387 kcal Electronic energy + Delta-G solvation = -28445.795781 eV Core-core repulsion = 24623.303728 eV Total energy + Delta-G solvation = -3822.492053 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.67226 -39.96584 -38.01217 -37.28042 -34.41327 -33.19914 -31.87802 -30.89654 -30.49317 -29.94529 -29.20706 -27.43059 -24.27697 -23.91219 -23.23793 -22.37248 -22.29632 -20.99286 -19.99517 -18.73925 -18.02707 -17.39408 -16.80455 -16.38263 -15.95119 -15.75284 -14.92612 -14.79735 -14.57780 -14.31906 -13.97453 -13.84529 -13.54429 -13.42515 -13.20865 -13.10105 -12.85016 -12.44965 -12.40254 -12.06678 -11.81616 -11.65175 -11.34065 -11.23707 -11.10612 -10.95232 -10.75059 -10.37841 -10.31978 -10.18737 -9.88627 -9.85316 -9.64638 -9.19928 -8.81687 -8.68887 -8.49414 -8.33679 -6.68971 -5.82499 -3.23083 0.66622 1.16647 1.71936 2.52156 3.34332 3.35309 3.40206 3.43652 3.46001 3.71411 4.28881 4.47405 4.50231 4.70685 4.82067 5.09252 5.15880 5.22483 5.27926 5.32351 5.36551 5.45272 5.52077 5.60398 5.67670 5.98820 5.99866 6.04720 6.05130 6.17976 6.23916 6.26986 6.31731 6.32386 6.41131 6.45091 6.50570 6.67900 6.69692 6.82674 6.92680 6.94819 7.05694 7.25927 7.54236 7.77385 7.86233 8.42111 8.50423 9.18892 9.82355 10.39106 11.26250 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.018119 B = 0.003224 C = 0.003007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.958928 B = 8682.268413 C = 9310.282561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.186 3.814 3 N -0.705 5.705 4 C 0.589 3.411 5 O -0.536 6.536 6 C -0.223 4.223 7 C 0.066 3.934 8 O -0.184 6.184 9 C 0.044 3.956 10 C -0.108 4.108 11 C -0.096 4.096 12 C -0.136 4.136 13 C -0.059 4.059 14 C -0.090 4.090 15 C -0.143 4.143 16 C 0.150 3.850 17 N -0.591 5.591 18 C -0.248 4.248 19 H 0.066 0.934 20 C 0.001 3.999 21 N -0.905 5.905 22 Si 0.901 3.099 23 H -0.278 1.278 24 H -0.289 1.289 25 H -0.291 1.291 26 C 0.172 3.828 27 C -0.146 4.146 28 H 0.047 0.953 29 H 0.059 0.941 30 H 0.073 0.927 31 H 0.397 0.603 32 H 0.218 0.782 33 H 0.132 0.868 34 H 0.134 0.866 35 H 0.130 0.870 36 H 0.138 0.862 37 H 0.073 0.927 38 H 0.064 0.936 39 H 0.050 0.950 40 H 0.015 0.985 41 H 0.252 0.748 42 H 0.090 0.910 43 H 0.014 0.986 44 H 0.072 0.928 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.164 14.975 4.622 18.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.101 3.899 3 N -0.356 5.356 4 C 0.376 3.624 5 O -0.415 6.415 6 C -0.227 4.227 7 C -0.002 4.002 8 O -0.083 6.083 9 C -0.003 4.003 10 C -0.126 4.126 11 C -0.114 4.114 12 C -0.155 4.155 13 C -0.077 4.077 14 C -0.091 4.091 15 C -0.182 4.182 16 C 0.024 3.976 17 N -0.314 5.314 18 C -0.378 4.378 19 H 0.083 0.917 20 C -0.197 4.197 21 N -0.550 5.550 22 Si 0.731 3.269 23 H -0.203 1.203 24 H -0.216 1.216 25 H -0.218 1.218 26 C 0.046 3.954 27 C -0.186 4.186 28 H 0.067 0.933 29 H 0.078 0.922 30 H 0.092 0.908 31 H 0.232 0.768 32 H 0.234 0.766 33 H 0.150 0.850 34 H 0.152 0.848 35 H 0.148 0.852 36 H 0.156 0.844 37 H 0.092 0.908 38 H 0.082 0.918 39 H 0.069 0.931 40 H 0.033 0.967 41 H 0.062 0.938 42 H 0.108 0.892 43 H 0.032 0.968 44 H 0.091 0.909 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -10.387 14.848 4.997 18.797 hybrid contribution 0.876 -0.807 -0.691 1.377 sum -9.511 14.041 4.306 17.497 Atomic orbital electron populations 1.22230 0.95305 1.01931 1.02401 1.20290 0.92656 0.79646 0.97315 1.46008 1.52901 1.12302 1.24358 1.16982 0.80024 0.83077 0.82271 1.90688 1.38236 1.76581 1.35999 1.21157 1.07429 0.96006 0.98147 1.24565 0.95410 0.81216 0.99044 1.83853 1.61438 1.28026 1.35024 1.19618 0.97487 0.96321 0.86845 1.19911 1.02912 0.94985 0.94785 1.20922 0.96596 0.98862 0.95049 1.21107 1.01113 0.92689 1.00553 1.20737 0.96349 0.98639 0.91942 1.19449 1.01023 0.91993 0.96680 1.22395 0.98935 0.99671 0.97245 1.20835 0.90890 0.96097 0.89789 1.44056 1.48245 1.39663 0.99421 1.19251 1.09648 1.02848 1.06039 0.91672 1.25003 0.97247 0.97484 0.99989 1.70021 1.37900 1.28985 1.18057 0.86238 0.79141 0.83763 0.77742 1.20282 1.21592 1.21794 1.20732 0.86830 0.96978 0.90851 1.22536 1.01427 1.00110 0.94517 0.93343 0.92177 0.90834 0.76843 0.76585 0.85009 0.84786 0.85195 0.84395 0.90819 0.91760 0.93121 0.96740 0.93767 0.89197 0.96815 0.90890 0.92722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.41 8.40 37.15 0.31 -2.10 16 2 C 0.19 3.09 0.66 -131.78 -0.09 3.00 16 3 N -0.70 -10.91 4.09 -48.74 -0.20 -11.10 16 4 C 0.59 9.57 7.22 -12.68 -0.09 9.48 16 5 O -0.54 -9.89 12.50 5.24 0.07 -9.83 16 6 C -0.22 -3.24 6.31 -103.25 -0.65 -3.89 16 7 C 0.07 0.79 11.52 29.95 0.34 1.14 16 8 O -0.18 -2.33 10.53 5.33 0.06 -2.28 16 9 C 0.04 0.57 7.39 -38.57 -0.28 0.28 16 10 C -0.11 -1.10 10.06 -39.46 -0.40 -1.50 16 11 C -0.10 -0.86 10.01 -39.56 -0.40 -1.26 16 12 C -0.14 -1.37 10.04 -39.56 -0.40 -1.77 16 13 C -0.06 -0.76 9.88 -39.40 -0.39 -1.15 16 14 C -0.09 -1.29 6.29 -104.98 -0.66 -1.95 16 15 C -0.14 -2.66 4.67 -26.61 -0.12 -2.78 16 16 C 0.15 3.24 6.25 -3.71 -0.02 3.22 16 17 N -0.59 -14.35 2.99 -172.32 -0.52 -14.86 16 18 C -0.25 -6.70 9.58 -15.06 -0.14 -6.85 16 19 H 0.07 1.76 7.89 -52.49 -0.41 1.35 16 20 C 0.00 0.02 4.91 -17.43 -0.09 -0.06 16 21 N -0.90 -25.30 11.19 55.49 0.62 -24.68 16 22 Si 0.90 21.40 29.59 -169.99 -5.03 16.37 16 23 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 24 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 25 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 26 C 0.17 3.78 5.04 -3.71 -0.02 3.76 16 27 C -0.15 -2.57 4.96 -26.61 -0.13 -2.70 16 28 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.07 1.20 6.15 -51.93 -0.32 0.88 16 31 H 0.40 5.54 6.19 -40.82 -0.25 5.29 16 32 H 0.22 1.85 7.41 -52.48 -0.39 1.46 16 33 H 0.13 1.03 8.06 -52.49 -0.42 0.60 16 34 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 35 H 0.13 0.97 8.06 -52.49 -0.42 0.54 16 36 H 0.14 1.86 7.54 -52.49 -0.40 1.46 16 37 H 0.07 1.40 6.21 -51.93 -0.32 1.08 16 38 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.05 1.11 7.93 -51.93 -0.41 0.70 16 40 H 0.01 0.33 7.75 -51.92 -0.40 -0.07 16 41 H 0.25 6.84 8.31 -40.82 -0.34 6.50 16 42 H 0.09 2.25 6.04 -51.93 -0.31 1.94 16 43 H 0.01 0.30 6.94 -51.93 -0.36 -0.06 16 44 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 45 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 LS Contribution 358.62 15.07 5.40 5.40 Total: -1.00 -31.54 358.62 -8.92 -40.46 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: -6.10 Total: 5.63 kcal Atomic # 6 Polarization: -1.88 SS G_CDS: -3.22 Total: -5.11 kcal Atomic # 7 Polarization: -50.55 SS G_CDS: -0.09 Total: -50.65 kcal Atomic # 8 Polarization: -12.22 SS G_CDS: 0.12 Total: -12.10 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.03 Total: 16.37 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.54 -8.92 -40.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045651950.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.175 kcal (2) G-P(sol) polarization free energy of solvation -31.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.459 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds