Wall clock time and date at job start Tue Mar 31 2020 16:02:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47378 * 2 1 4 4 C 1.50699 * 115.55085 * 278.64974 * 3 2 1 5 5 O 1.21287 * 120.00098 * 117.60946 * 4 3 2 6 6 N 1.34777 * 119.99814 * 297.61328 * 4 3 2 7 7 C 1.46505 * 119.99748 * 174.98657 * 6 4 3 8 8 C 1.53004 * 109.46993 * 180.02562 * 7 6 4 9 9 C 1.52999 * 109.47161 * 180.02562 * 8 7 6 10 10 H 1.09010 * 109.46852 * 305.00039 * 9 8 7 11 11 C 1.53002 * 109.47091 * 184.99997 * 9 8 7 12 12 N 1.46504 * 109.47228 * 64.99701 * 9 8 7 13 13 C 1.34769 * 119.99585 * 205.00055 * 12 9 8 14 14 O 1.21279 * 120.00500 * 0.02562 * 13 12 9 15 15 C 1.50703 * 119.99671 * 180.02562 * 13 12 9 16 16 S 1.80999 * 109.47361 * 179.97438 * 15 13 12 17 17 C 1.76195 * 100.00175 * 180.02562 * 16 15 13 18 18 H 1.08001 * 120.00138 * 359.97438 * 17 16 15 19 19 C 1.38797 * 120.00409 * 180.02562 * 17 16 15 20 20 N 1.31632 * 119.99505 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00536 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46945 * 59.99731 * 21 19 17 23 23 H 1.48500 * 109.47101 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47177 * 300.00222 * 21 19 17 25 25 C 1.52999 * 117.50143 * 132.94148 * 3 2 1 26 26 C 1.53000 * 117.49748 * 64.31771 * 3 2 1 27 27 H 1.08998 * 109.46632 * 53.67228 * 1 2 3 28 28 H 1.08993 * 109.47026 * 173.66379 * 1 2 3 29 29 H 1.08995 * 109.47078 * 293.66901 * 1 2 3 30 30 H 1.09003 * 109.46634 * 120.00002 * 2 1 3 31 31 H 1.09000 * 109.47488 * 239.99569 * 2 1 3 32 32 H 0.96997 * 120.00097 * 354.99344 * 6 4 3 33 33 H 1.09001 * 109.47391 * 300.00209 * 7 6 4 34 34 H 1.09007 * 109.46916 * 60.00347 * 7 6 4 35 35 H 1.09001 * 109.47153 * 300.00269 * 8 7 6 36 36 H 1.08994 * 109.46863 * 60.00089 * 8 7 6 37 37 H 1.08992 * 109.46789 * 179.97438 * 11 9 8 38 38 H 1.08997 * 109.46968 * 299.99830 * 11 9 8 39 39 H 1.09000 * 109.46737 * 59.99553 * 11 9 8 40 40 H 0.97002 * 119.99589 * 25.00191 * 12 9 8 41 41 H 1.09006 * 109.47049 * 300.00230 * 15 13 12 42 42 H 1.09002 * 109.47249 * 59.99930 * 15 13 12 43 43 H 0.97007 * 120.00165 * 180.02562 * 20 19 17 44 44 H 1.09006 * 117.49651 * 359.97438 * 25 3 2 45 45 H 1.08995 * 117.49906 * 145.02454 * 25 3 2 46 46 H 1.09001 * 117.49984 * 214.98067 * 26 3 2 47 47 H 1.09001 * 117.50039 * 359.97438 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0640 2.1234 -1.3441 5 8 1.3823 3.1077 -1.5375 6 7 2.8429 1.6385 -2.3314 7 6 2.7842 2.2325 -3.6694 8 6 3.7593 1.5020 -4.5949 9 6 3.6985 2.1227 -5.9920 10 1 2.6688 2.1121 -6.3498 11 6 4.5789 1.3149 -6.9477 12 7 4.1809 3.5048 -5.9338 13 6 3.7759 4.3993 -6.8569 14 8 3.0117 4.0602 -7.7355 15 6 4.2726 5.8208 -6.7974 16 16 3.5552 6.7683 -8.1626 17 6 4.2844 8.3432 -7.8584 18 1 4.9522 8.4763 -7.0201 19 6 3.9997 9.4132 -8.6954 20 7 3.1854 9.2512 -9.7168 21 14 4.7721 11.0831 -8.3725 22 1 6.2512 10.9642 -8.4325 23 1 4.3114 12.0490 -9.4020 24 1 4.3684 11.5633 -7.0265 25 6 3.1473 1.8003 0.9935 26 6 1.7211 2.3045 1.2231 27 1 -0.3632 0.6088 -0.8279 28 1 -0.3633 -1.0213 -0.1134 29 1 -0.3633 0.4125 0.9412 30 1 1.8933 -0.5139 0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 3.4422 0.8963 -2.1561 33 1 1.7721 2.1411 -4.0635 34 1 3.0578 3.2861 -3.6115 35 1 4.7715 1.5931 -4.2010 36 1 3.4853 0.4486 -4.6526 37 1 4.5352 1.7569 -7.9430 38 1 5.6084 1.3256 -6.5899 39 1 4.2199 0.2867 -6.9909 40 1 4.7919 3.7760 -5.2308 41 1 3.9776 6.2694 -5.8487 42 1 5.3594 5.8298 -6.8811 43 1 2.9866 9.9988 -10.3021 44 1 3.5120 1.0081 1.6474 45 1 3.8932 2.5284 0.6749 46 1 1.5289 3.3643 1.0556 47 1 1.1475 1.8442 2.0276 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078230224.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:02:15 Heat of formation + Delta-G solvation = -72.588075 kcal Electronic energy + Delta-G solvation = -25086.192005 eV Core-core repulsion = 21395.228008 eV Total energy + Delta-G solvation = -3690.963997 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.52350 -39.44050 -37.53637 -36.48142 -34.65179 -32.40450 -32.27285 -31.80964 -29.52031 -28.46372 -25.57063 -25.44653 -23.84348 -22.92788 -22.17894 -21.58370 -20.33893 -19.66703 -17.81856 -17.28588 -16.61440 -16.40853 -15.93049 -15.84000 -15.32175 -14.85685 -14.80882 -14.77576 -14.18497 -14.09080 -13.70814 -13.68864 -13.45137 -13.21345 -12.89815 -12.85524 -12.62657 -12.14768 -12.07180 -11.97206 -11.93439 -11.75276 -11.56549 -11.51693 -11.09278 -11.02038 -11.01298 -10.85890 -10.74454 -10.47617 -9.98068 -9.79982 -9.37395 -9.35960 -9.04022 -8.90239 -8.21480 -6.47152 -6.19064 -3.89427 2.29407 2.77168 3.04976 3.11690 3.25530 3.26753 3.29313 3.33049 3.72896 4.11999 4.22996 4.29637 4.36501 4.45508 4.49216 4.68279 4.74484 4.89933 5.00952 5.06757 5.15902 5.17008 5.17353 5.22492 5.30886 5.33882 5.43777 5.46015 5.53709 5.55395 5.61654 5.63479 5.68074 5.72331 5.76506 5.86467 5.91580 6.00409 6.12363 6.15943 6.17935 6.66166 7.18558 7.61697 7.71522 7.95876 8.37507 8.63482 9.26087 10.88307 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.014472 B = 0.002208 C = 0.002010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1934.297089 B =12678.605952 C =13924.820254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.079 4.079 3 C -0.162 4.162 4 C 0.548 3.452 5 O -0.529 6.529 6 N -0.727 5.727 7 C 0.116 3.884 8 C -0.136 4.136 9 C 0.147 3.853 10 H 0.091 0.909 11 C -0.162 4.162 12 N -0.736 5.736 13 C 0.534 3.466 14 O -0.516 6.516 15 C -0.154 4.154 16 S -0.060 6.060 17 C -0.536 4.536 18 H 0.072 0.928 19 C 0.073 3.927 20 N -0.868 5.868 21 Si 0.919 3.081 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.274 1.274 25 C -0.159 4.159 26 C -0.143 4.143 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.400 0.600 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.084 0.916 37 H 0.067 0.933 38 H 0.055 0.945 39 H 0.062 0.938 40 H 0.397 0.603 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.269 0.731 44 H 0.104 0.896 45 H 0.098 0.902 46 H 0.105 0.895 47 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.594 -23.030 21.606 31.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.117 4.117 3 C -0.165 4.165 4 C 0.333 3.667 5 O -0.405 6.405 6 N -0.379 5.379 7 C -0.007 4.007 8 C -0.175 4.175 9 C 0.041 3.959 10 H 0.109 0.891 11 C -0.221 4.221 12 N -0.391 5.391 13 C 0.320 3.680 14 O -0.390 6.390 15 C -0.305 4.305 16 S 0.167 5.833 17 C -0.684 4.684 18 H 0.090 0.910 19 C -0.136 4.136 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.200 1.200 23 H -0.208 1.208 24 H -0.199 1.199 25 C -0.196 4.196 26 C -0.180 4.180 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.091 0.909 31 H 0.088 0.912 32 H 0.234 0.766 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.094 0.906 36 H 0.102 0.898 37 H 0.086 0.914 38 H 0.075 0.925 39 H 0.081 0.919 40 H 0.231 0.769 41 H 0.107 0.893 42 H 0.107 0.893 43 H 0.079 0.921 44 H 0.122 0.878 45 H 0.116 0.884 46 H 0.123 0.877 47 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 0.691 -22.795 19.797 30.200 hybrid contribution 2.024 1.239 1.593 2.858 sum 2.715 -21.556 21.390 30.489 Atomic orbital electron populations 1.21752 0.94895 1.01735 1.02568 1.21028 0.96576 0.91380 1.02680 1.21538 1.07235 0.97756 0.89972 1.19535 0.79124 0.83487 0.84551 1.90756 1.42138 1.25487 1.82089 1.45935 1.43698 1.37649 1.10618 1.21438 1.00299 0.98188 0.80808 1.22100 1.00045 1.00592 0.94743 1.20777 0.99965 0.81406 0.93756 0.89080 1.22169 0.99590 0.99684 1.00641 1.46126 1.50900 1.09820 1.32217 1.20293 0.80202 0.86710 0.80785 1.90698 1.34108 1.79754 1.34456 1.23540 1.04596 0.95072 1.07281 1.85376 1.61751 1.04942 1.31226 1.22826 1.33222 0.95546 1.16791 0.91011 1.24991 0.95050 0.99064 0.94496 1.70011 1.33280 1.32194 1.14822 0.86226 0.79375 0.81744 0.78165 1.19965 1.20814 1.19932 1.23142 0.92220 1.03665 1.00593 1.22981 0.97754 1.00488 0.96818 0.92408 0.92391 0.92372 0.90889 0.91246 0.76612 0.91140 0.90820 0.90635 0.89759 0.91422 0.92545 0.91889 0.76944 0.89257 0.89292 0.92147 0.87784 0.88370 0.87698 0.87881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.72 37.16 0.36 -0.61 16 2 C -0.08 -0.43 5.87 -26.73 -0.16 -0.59 16 3 C -0.16 -1.19 1.89 -155.66 -0.29 -1.49 16 4 C 0.55 5.80 7.08 -10.99 -0.08 5.72 16 5 O -0.53 -8.22 16.63 5.55 0.09 -8.13 16 6 N -0.73 -5.77 5.55 -60.29 -0.33 -6.10 16 7 C 0.12 1.09 5.57 -4.04 -0.02 1.07 16 8 C -0.14 -0.94 4.87 -26.73 -0.13 -1.07 16 9 C 0.15 1.55 2.57 -67.93 -0.17 1.38 16 10 H 0.09 1.17 7.58 -51.92 -0.39 0.78 16 11 C -0.16 -1.61 9.48 37.16 0.35 -1.26 16 12 N -0.74 -9.38 4.53 -53.80 -0.24 -9.63 16 13 C 0.53 9.86 7.81 -10.99 -0.09 9.78 16 14 O -0.52 -11.59 15.52 5.56 0.09 -11.51 16 15 C -0.15 -3.15 6.16 36.01 0.22 -2.93 16 16 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 17 C -0.54 -15.48 9.50 30.94 0.29 -15.18 16 18 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 19 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 20 N -0.87 -26.49 13.22 55.49 0.73 -25.76 16 21 Si 0.92 21.71 29.55 -169.99 -5.02 16.69 16 22 H -0.27 -6.31 7.11 56.52 0.40 -5.90 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 24 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 25 C -0.16 -0.92 9.88 -26.73 -0.26 -1.18 16 26 C -0.14 -1.04 9.41 -26.73 -0.25 -1.29 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.35 7.82 -51.93 -0.41 -0.05 16 30 H 0.07 0.29 7.94 -51.93 -0.41 -0.12 16 31 H 0.07 0.33 8.12 -51.93 -0.42 -0.09 16 32 H 0.40 1.94 8.48 -40.82 -0.35 1.59 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.07 0.84 7.75 -51.93 -0.40 0.44 16 35 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 38 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 40 H 0.40 4.00 8.60 -40.82 -0.35 3.65 16 41 H 0.09 1.72 8.14 -51.91 -0.42 1.29 16 42 H 0.09 1.67 8.14 -51.91 -0.42 1.25 16 43 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 44 H 0.10 0.40 8.08 -51.93 -0.42 -0.02 16 45 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 46 H 0.10 0.96 7.94 -51.93 -0.41 0.55 16 47 H 0.10 0.58 7.96 -51.93 -0.41 0.17 16 LS Contribution 408.13 15.07 6.15 6.15 Total: -1.00 -37.13 408.13 -9.25 -46.38 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -8.17 Total: 1.38 kcal Atomic # 6 Polarization: -5.30 SS G_CDS: -0.32 Total: -5.63 kcal Atomic # 7 Polarization: -41.64 SS G_CDS: 0.16 Total: -41.48 kcal Atomic # 8 Polarization: -19.81 SS G_CDS: 0.18 Total: -19.63 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -37.13 -9.25 -46.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078230224.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.212 kcal (2) G-P(sol) polarization free energy of solvation -37.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds