Wall clock time and date at job start Tue Mar 31 2020 16:02:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47378 * 2 1 4 4 C 1.50699 * 115.55085 * 278.64974 * 3 2 1 5 5 O 1.21287 * 120.00098 * 117.60946 * 4 3 2 6 6 N 1.34777 * 119.99814 * 297.61328 * 4 3 2 7 7 C 1.46505 * 119.99748 * 174.98657 * 6 4 3 8 8 C 1.53004 * 109.46993 * 180.02562 * 7 6 4 9 9 C 1.52999 * 109.47161 * 180.02562 * 8 7 6 10 10 H 1.09010 * 109.46852 * 305.00039 * 9 8 7 11 11 C 1.53002 * 109.47091 * 184.99997 * 9 8 7 12 12 N 1.46504 * 109.47228 * 64.99701 * 9 8 7 13 13 C 1.34769 * 119.99585 * 205.00055 * 12 9 8 14 14 O 1.21279 * 120.00500 * 0.02562 * 13 12 9 15 15 C 1.50703 * 119.99671 * 180.02562 * 13 12 9 16 16 S 1.80999 * 109.47361 * 179.97438 * 15 13 12 17 17 C 1.76195 * 100.00175 * 180.02562 * 16 15 13 18 18 H 1.08001 * 120.00138 * 359.97438 * 17 16 15 19 19 C 1.38797 * 120.00409 * 180.02562 * 17 16 15 20 20 N 1.31632 * 119.99505 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00536 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46945 * 59.99731 * 21 19 17 23 23 H 1.48500 * 109.47101 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47177 * 300.00222 * 21 19 17 25 25 C 1.52999 * 117.50143 * 132.94148 * 3 2 1 26 26 C 1.53000 * 117.49748 * 64.31771 * 3 2 1 27 27 H 1.08998 * 109.46632 * 53.67228 * 1 2 3 28 28 H 1.08993 * 109.47026 * 173.66379 * 1 2 3 29 29 H 1.08995 * 109.47078 * 293.66901 * 1 2 3 30 30 H 1.09003 * 109.46634 * 120.00002 * 2 1 3 31 31 H 1.09000 * 109.47488 * 239.99569 * 2 1 3 32 32 H 0.96997 * 120.00097 * 354.99344 * 6 4 3 33 33 H 1.09001 * 109.47391 * 300.00209 * 7 6 4 34 34 H 1.09007 * 109.46916 * 60.00347 * 7 6 4 35 35 H 1.09001 * 109.47153 * 300.00269 * 8 7 6 36 36 H 1.08994 * 109.46863 * 60.00089 * 8 7 6 37 37 H 1.08992 * 109.46789 * 179.97438 * 11 9 8 38 38 H 1.08997 * 109.46968 * 299.99830 * 11 9 8 39 39 H 1.09000 * 109.46737 * 59.99553 * 11 9 8 40 40 H 0.97002 * 119.99589 * 25.00191 * 12 9 8 41 41 H 1.09006 * 109.47049 * 300.00230 * 15 13 12 42 42 H 1.09002 * 109.47249 * 59.99930 * 15 13 12 43 43 H 0.97007 * 120.00165 * 180.02562 * 20 19 17 44 44 H 1.09006 * 117.49651 * 359.97438 * 25 3 2 45 45 H 1.08995 * 117.49906 * 145.02454 * 25 3 2 46 46 H 1.09001 * 117.49984 * 214.98067 * 26 3 2 47 47 H 1.09001 * 117.50039 * 359.97438 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0640 2.1234 -1.3441 5 8 1.3823 3.1077 -1.5375 6 7 2.8429 1.6385 -2.3314 7 6 2.7842 2.2325 -3.6694 8 6 3.7593 1.5020 -4.5949 9 6 3.6985 2.1227 -5.9920 10 1 2.6688 2.1121 -6.3498 11 6 4.5789 1.3149 -6.9477 12 7 4.1809 3.5048 -5.9338 13 6 3.7759 4.3993 -6.8569 14 8 3.0117 4.0602 -7.7355 15 6 4.2726 5.8208 -6.7974 16 16 3.5552 6.7683 -8.1626 17 6 4.2844 8.3432 -7.8584 18 1 4.9522 8.4763 -7.0201 19 6 3.9997 9.4132 -8.6954 20 7 3.1854 9.2512 -9.7168 21 14 4.7721 11.0831 -8.3725 22 1 6.2512 10.9642 -8.4325 23 1 4.3114 12.0490 -9.4020 24 1 4.3684 11.5633 -7.0265 25 6 3.1473 1.8003 0.9935 26 6 1.7211 2.3045 1.2231 27 1 -0.3632 0.6088 -0.8279 28 1 -0.3633 -1.0213 -0.1134 29 1 -0.3633 0.4125 0.9412 30 1 1.8933 -0.5139 0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 3.4422 0.8963 -2.1561 33 1 1.7721 2.1411 -4.0635 34 1 3.0578 3.2861 -3.6115 35 1 4.7715 1.5931 -4.2010 36 1 3.4853 0.4486 -4.6526 37 1 4.5352 1.7569 -7.9430 38 1 5.6084 1.3256 -6.5899 39 1 4.2199 0.2867 -6.9909 40 1 4.7919 3.7760 -5.2308 41 1 3.9776 6.2694 -5.8487 42 1 5.3594 5.8298 -6.8811 43 1 2.9866 9.9988 -10.3021 44 1 3.5120 1.0081 1.6474 45 1 3.8932 2.5284 0.6749 46 1 1.5289 3.3643 1.0556 47 1 1.1475 1.8442 2.0276 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078230224.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:02:14 Heat of formation + Delta-G solvation = -99.490293 kcal Electronic energy + Delta-G solvation = -25087.358573 eV Core-core repulsion = 21395.228008 eV Total energy + Delta-G solvation = -3692.130565 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.29859 -40.76097 -38.25286 -37.49753 -35.64129 -34.60160 -33.05884 -32.70670 -30.56336 -29.73143 -27.67439 -26.20080 -24.49720 -23.48542 -22.85958 -22.56556 -21.61558 -20.42373 -19.81652 -17.99915 -17.88228 -17.45050 -16.94997 -16.88996 -16.66844 -16.41140 -16.03506 -15.83269 -15.41687 -14.81897 -14.73326 -14.70236 -14.41125 -14.36667 -14.17282 -13.95426 -13.41633 -13.32476 -13.19060 -13.03472 -12.88147 -12.63343 -12.61933 -12.49750 -12.44442 -12.40940 -12.01716 -11.91477 -11.74989 -11.37420 -11.14600 -11.01282 -10.92248 -10.78093 -10.30273 -10.22047 -10.07363 -8.68486 -8.36083 -6.14412 1.25490 1.42354 1.45216 1.50310 1.55449 1.62232 2.06910 2.25189 2.30723 2.71951 2.97679 3.30725 3.59090 3.69903 3.72961 3.84397 3.90779 3.99705 4.01320 4.09459 4.26991 4.41346 4.42740 4.47167 4.48744 4.55106 4.58102 4.63996 4.73920 4.81715 4.87580 4.95307 5.00869 5.04727 5.07486 5.13041 5.19652 5.21133 5.33293 5.37460 5.38736 5.39502 5.55510 6.17817 6.50357 6.52623 7.04749 7.22334 7.26264 8.72953 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.014472 B = 0.002208 C = 0.002010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1934.297089 B =12678.605952 C =13924.820254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.074 4.074 3 C -0.167 4.167 4 C 0.540 3.460 5 O -0.591 6.591 6 N -0.708 5.708 7 C 0.117 3.883 8 C -0.116 4.116 9 C 0.141 3.859 10 H 0.063 0.937 11 C -0.156 4.156 12 N -0.710 5.710 13 C 0.534 3.466 14 O -0.564 6.564 15 C -0.131 4.131 16 S -0.151 6.151 17 C -0.548 4.548 18 H 0.082 0.918 19 C 0.012 3.988 20 N -0.911 5.911 21 Si 0.999 3.001 22 H -0.260 1.260 23 H -0.278 1.278 24 H -0.264 1.264 25 C -0.134 4.134 26 C -0.160 4.160 27 H 0.026 0.974 28 H 0.071 0.929 29 H 0.058 0.942 30 H 0.100 0.900 31 H 0.080 0.920 32 H 0.420 0.580 33 H 0.045 0.955 34 H 0.050 0.950 35 H 0.106 0.894 36 H 0.115 0.885 37 H 0.029 0.971 38 H 0.077 0.923 39 H 0.089 0.911 40 H 0.414 0.586 41 H 0.103 0.897 42 H 0.110 0.890 43 H 0.271 0.729 44 H 0.135 0.865 45 H 0.092 0.908 46 H 0.075 0.925 47 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.390 -25.126 24.438 35.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.111 4.111 3 C -0.170 4.170 4 C 0.327 3.673 5 O -0.471 6.471 6 N -0.360 5.360 7 C -0.007 4.007 8 C -0.154 4.154 9 C 0.037 3.963 10 H 0.081 0.919 11 C -0.214 4.214 12 N -0.364 5.364 13 C 0.320 3.680 14 O -0.442 6.442 15 C -0.282 4.282 16 S 0.076 5.924 17 C -0.696 4.696 18 H 0.100 0.900 19 C -0.193 4.193 20 N -0.547 5.547 21 Si 0.821 3.179 22 H -0.185 1.185 23 H -0.203 1.203 24 H -0.188 1.188 25 C -0.171 4.171 26 C -0.197 4.197 27 H 0.045 0.955 28 H 0.090 0.910 29 H 0.077 0.923 30 H 0.118 0.882 31 H 0.099 0.901 32 H 0.258 0.742 33 H 0.063 0.937 34 H 0.069 0.931 35 H 0.124 0.876 36 H 0.133 0.867 37 H 0.049 0.951 38 H 0.096 0.904 39 H 0.107 0.893 40 H 0.251 0.749 41 H 0.121 0.879 42 H 0.129 0.871 43 H 0.080 0.920 44 H 0.153 0.847 45 H 0.111 0.889 46 H 0.094 0.906 47 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 3.551 -24.967 22.680 33.916 hybrid contribution 1.135 1.778 0.779 2.249 sum 4.686 -23.188 23.459 33.317 Atomic orbital electron populations 1.21770 0.96088 1.01926 1.01342 1.21080 0.95457 0.90046 1.04527 1.21549 1.08924 0.98500 0.88037 1.20232 0.78235 0.82790 0.86046 1.90728 1.44704 1.28365 1.83301 1.45753 1.43155 1.37564 1.09506 1.21309 0.99747 0.97623 0.82037 1.21992 1.00885 1.01263 0.91250 1.20994 0.98684 0.80099 0.96563 0.91901 1.22112 1.00681 1.00489 0.98160 1.45911 1.49779 1.10069 1.30676 1.20002 0.79955 0.86685 0.81343 1.90685 1.36448 1.80325 1.36757 1.23388 1.05212 0.95365 1.04267 1.85547 1.63784 1.07069 1.36034 1.23167 1.33353 0.95814 1.17222 0.90024 1.26153 0.95404 1.03718 0.93984 1.70182 1.34891 1.33625 1.16033 0.84995 0.78808 0.75782 0.78356 1.18467 1.20265 1.18840 1.23252 0.90943 1.03705 0.99223 1.23010 0.99947 0.99161 0.97613 0.95450 0.90991 0.92297 0.88186 0.90140 0.74241 0.93696 0.93139 0.87583 0.86670 0.95132 0.90405 0.89264 0.74907 0.87879 0.87131 0.91968 0.84653 0.88900 0.90610 0.86105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 9.72 71.98 0.70 -1.08 16 2 C -0.07 -0.59 5.87 30.59 0.18 -0.41 16 3 C -0.17 -2.19 1.89 -52.93 -0.10 -2.29 16 4 C 0.54 11.31 7.08 87.66 0.62 11.93 16 5 O -0.59 -19.45 16.63 -3.05 -0.05 -19.50 16 6 N -0.71 -10.01 5.55 -463.03 -2.57 -12.58 16 7 C 0.12 2.09 5.57 86.38 0.48 2.58 16 8 C -0.12 -1.22 4.87 30.60 0.15 -1.07 16 9 C 0.14 2.79 2.57 44.99 0.12 2.91 16 10 H 0.06 1.65 7.58 -2.38 -0.02 1.63 16 11 C -0.16 -2.75 9.48 71.98 0.68 -2.07 16 12 N -0.71 -17.37 4.53 -442.52 -2.00 -19.37 16 13 C 0.53 20.05 7.81 87.66 0.68 20.73 16 14 O -0.56 -26.53 15.52 -3.03 -0.05 -26.58 16 15 C -0.13 -5.38 6.16 71.24 0.44 -4.94 16 16 S -0.15 -8.66 20.57 -56.49 -1.16 -9.82 16 17 C -0.55 -32.10 9.50 67.95 0.65 -31.46 16 18 H 0.08 4.44 7.80 -2.91 -0.02 4.42 16 19 C 0.01 0.71 5.49 84.86 0.47 1.17 16 20 N -0.91 -57.12 13.22 21.65 0.29 -56.84 16 21 Si 1.00 44.58 29.55 68.60 2.03 46.60 16 22 H -0.26 -10.93 7.11 99.48 0.71 -10.23 16 23 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 24 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 25 C -0.13 -1.17 9.88 30.59 0.30 -0.87 16 26 C -0.16 -2.20 9.41 30.60 0.29 -1.92 16 27 H 0.03 0.47 8.14 -2.39 -0.02 0.45 16 28 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.06 0.65 7.82 -2.39 -0.02 0.64 16 30 H 0.10 0.33 7.94 -2.39 -0.02 0.31 16 31 H 0.08 0.48 8.12 -2.39 -0.02 0.46 16 32 H 0.42 2.54 8.48 -92.71 -0.79 1.76 16 33 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.05 1.15 7.75 -2.38 -0.02 1.13 16 35 H 0.11 0.59 8.14 -2.39 -0.02 0.58 16 36 H 0.12 0.65 8.14 -2.39 -0.02 0.63 16 37 H 0.03 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.41 7.37 8.60 -92.71 -0.80 6.57 16 41 H 0.10 3.93 8.14 -2.39 -0.02 3.91 16 42 H 0.11 4.04 8.14 -2.39 -0.02 4.02 16 43 H 0.27 15.80 8.31 -92.70 -0.77 15.03 16 44 H 0.14 0.38 8.08 -2.38 -0.02 0.36 16 45 H 0.09 0.93 8.14 -2.39 -0.02 0.92 16 46 H 0.08 1.49 7.94 -2.39 -0.02 1.47 16 47 H 0.12 1.17 7.96 -2.39 -0.02 1.15 16 Total: -1.00 -88.50 408.13 1.51 -86.99 By element: Atomic # 1 Polarization: 18.49 SS G_CDS: -0.62 Total: 17.87 kcal Atomic # 6 Polarization: -12.44 SS G_CDS: 5.65 Total: -6.78 kcal Atomic # 7 Polarization: -84.50 SS G_CDS: -4.29 Total: -88.79 kcal Atomic # 8 Polarization: -45.98 SS G_CDS: -0.10 Total: -46.07 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.60 kcal Atomic # 16 Polarization: -8.66 SS G_CDS: -1.16 Total: -9.82 kcal Total: -88.50 1.51 -86.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078230224.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.499 kcal (2) G-P(sol) polarization free energy of solvation -88.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds