Wall clock time and date at job start Tue Mar 31 2020 15:52:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.46250 * 126.95939 * 2 1 4 4 C 1.39699 * 134.18972 * 0.02562 * 3 2 1 5 5 C 1.36622 * 119.70847 * 180.27606 * 4 3 2 6 6 C 1.38833 * 120.44515 * 359.97438 * 5 4 3 7 7 C 1.37794 * 120.74418 * 0.02562 * 6 5 4 8 8 C 1.39024 * 119.85594 * 359.96411 * 7 6 5 9 9 O 1.34712 * 133.24281 * 180.02562 * 8 7 6 10 10 C 1.34951 * 110.86308 * 179.97438 * 9 8 7 11 11 C 1.46972 * 125.13265 * 179.97438 * 10 9 8 12 12 O 1.21658 * 120.00347 * 180.02562 * 11 10 9 13 13 N 1.34780 * 120.00305 * 0.02916 * 11 10 9 14 14 C 1.46500 * 120.00380 * 180.02562 * 13 11 10 15 15 C 1.52994 * 109.47262 * 180.02562 * 14 13 11 16 16 H 1.08999 * 112.90988 * 43.74349 * 15 14 13 17 17 C 1.53781 * 113.61620 * 174.99790 * 15 14 13 18 18 C 1.53781 * 87.08131 * 139.98066 * 17 15 14 19 19 H 1.09000 * 113.61724 * 89.20383 * 18 17 15 20 20 N 1.46506 * 113.61270 * 220.02225 * 18 17 15 21 21 C 1.36938 * 119.99589 * 203.47195 * 20 18 17 22 22 H 1.07999 * 120.00325 * 359.97438 * 21 20 18 23 23 C 1.38815 * 119.99408 * 179.97438 * 21 20 18 24 24 N 1.31617 * 120.00325 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99550 * 179.97438 * 23 21 20 26 26 H 1.48495 * 109.47349 * 59.99998 * 25 23 21 27 27 H 1.48505 * 109.47077 * 180.02562 * 25 23 21 28 28 H 1.48500 * 109.47093 * 299.99919 * 25 23 21 29 29 C 1.53782 * 87.17496 * 334.60808 * 18 17 15 30 30 H 1.09000 * 109.47123 * 270.18815 * 1 2 3 31 31 H 1.08998 * 109.47397 * 30.19055 * 1 2 3 32 32 H 1.09004 * 109.46904 * 150.19126 * 1 2 3 33 33 H 1.07998 * 120.14822 * 0.30023 * 4 3 2 34 34 H 1.08001 * 119.77607 * 179.97438 * 5 4 3 35 35 H 1.08006 * 119.62962 * 179.97438 * 6 5 4 36 36 H 1.08007 * 120.07375 * 180.02562 * 7 6 5 37 37 H 0.97002 * 119.99248 * 359.97438 * 13 11 10 38 38 H 1.08997 * 109.47115 * 59.99481 * 14 13 11 39 39 H 1.08999 * 109.46704 * 300.00016 * 14 13 11 40 40 H 1.09003 * 113.61141 * 25.42888 * 17 15 14 41 41 H 1.09002 * 113.61683 * 254.52852 * 17 15 14 42 42 H 0.96995 * 120.00050 * 23.19403 * 20 18 17 43 43 H 0.97000 * 119.99693 * 180.02562 * 24 23 21 44 44 H 1.08994 * 113.61532 * 139.93563 * 29 18 17 45 45 H 1.08994 * 113.61779 * 270.84917 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3863 1.1686 0.0000 4 6 2.1713 2.5490 0.0004 5 6 3.2397 3.4006 -0.0054 6 6 4.5358 2.9032 -0.0113 7 6 4.7691 1.5451 -0.0118 8 6 3.6980 0.6589 -0.0057 9 8 3.6125 -0.6856 -0.0041 10 6 2.3236 -1.0852 0.0032 11 6 1.8717 -2.4837 0.0063 12 8 0.6821 -2.7386 0.0126 13 7 2.7751 -3.4839 0.0023 14 6 2.3246 -4.8779 0.0048 15 6 3.5404 -5.8067 -0.0001 16 1 4.3209 -5.4877 0.6905 17 6 3.1783 -7.2961 0.1249 18 6 4.2813 -7.5703 -0.9110 19 1 5.2641 -7.7349 -0.4692 20 7 3.9210 -8.5945 -1.8947 21 6 4.9022 -9.2861 -2.5536 22 1 5.9416 -9.0762 -2.3486 23 6 4.5608 -10.2569 -3.4853 24 7 3.2941 -10.5123 -3.7356 25 14 5.8992 -11.1998 -4.3848 26 1 6.7394 -11.9273 -3.4000 27 1 5.2772 -12.1718 -5.3194 28 1 6.7450 -10.2493 -5.1506 29 6 4.0635 -6.1325 -1.4110 30 1 -0.3633 0.0034 1.0277 31 1 -0.3634 0.8882 -0.5168 32 1 -0.3633 -0.8917 -0.5109 33 1 1.1651 2.9412 0.0058 34 1 3.0748 4.4679 -0.0055 35 1 5.3707 3.5883 -0.0163 36 1 5.7819 1.1700 -0.0160 37 1 3.7235 -3.2806 -0.0031 38 1 1.7197 -5.0659 -0.8822 39 1 1.7283 -5.0654 0.8977 40 1 2.1758 -7.5331 -0.2315 41 1 3.3891 -7.7156 1.1086 42 1 2.9875 -8.7856 -2.0762 43 1 3.0556 -11.1909 -4.3863 44 1 4.9879 -5.6139 -1.6654 45 1 3.3035 -6.0508 -2.1880 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086267438.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:52:02 Heat of formation + Delta-G solvation = 18.443925 kcal Electronic energy + Delta-G solvation = -26298.727726 eV Core-core repulsion = 22476.267222 eV Total energy + Delta-G solvation = -3822.460504 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.85665 -39.82256 -38.51101 -38.16424 -35.02549 -34.09497 -33.30657 -30.98524 -30.59331 -30.11267 -28.37425 -27.01531 -25.11050 -24.43892 -23.61448 -23.06382 -21.24364 -21.04727 -20.35909 -19.20389 -18.35177 -17.41067 -17.04410 -16.77715 -16.66200 -15.99498 -15.42062 -15.22180 -14.78731 -14.63022 -14.44071 -14.11717 -13.76963 -13.55839 -13.47639 -13.26866 -13.08225 -12.91536 -12.63446 -12.61917 -12.16394 -11.94683 -11.84010 -11.41054 -11.35613 -11.24683 -10.83382 -10.58429 -10.40477 -10.26578 -10.19258 -10.03656 -9.83652 -9.52365 -9.21839 -9.04733 -8.86981 -8.51271 -6.96786 -5.78360 -3.07284 0.21670 0.93080 1.49522 2.15650 2.92238 2.97573 3.27588 3.43148 3.47577 3.48679 4.07324 4.16758 4.45076 4.56400 4.58021 4.68218 4.82524 4.92651 4.93972 4.98666 5.06800 5.20262 5.26105 5.43292 5.45599 5.47983 5.59691 5.63999 5.74690 5.77766 5.79984 5.89312 5.91271 5.99861 6.04943 6.08086 6.14687 6.19582 6.28106 6.33769 6.39448 6.58570 6.66211 6.80847 7.10222 7.29865 7.68443 7.88930 8.40203 9.51170 10.09341 10.43591 11.43905 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.020540 B = 0.001984 C = 0.001889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.899387 B =14106.892476 C =14820.606109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.082 4.082 3 C -0.142 4.142 4 C -0.059 4.059 5 C -0.141 4.141 6 C -0.084 4.084 7 C -0.111 4.111 8 C 0.072 3.928 9 O -0.183 6.183 10 C -0.033 4.033 11 C 0.596 3.404 12 O -0.515 6.515 13 N -0.710 5.710 14 C 0.131 3.869 15 C -0.128 4.128 16 H 0.089 0.911 17 C -0.141 4.141 18 C 0.166 3.834 19 H 0.075 0.925 20 N -0.713 5.713 21 C -0.245 4.245 22 H 0.070 0.930 23 C -0.013 4.013 24 N -0.932 5.932 25 Si 0.908 3.092 26 H -0.286 1.286 27 H -0.291 1.291 28 H -0.286 1.286 29 C -0.161 4.161 30 H 0.077 0.923 31 H 0.068 0.932 32 H 0.093 0.907 33 H 0.130 0.870 34 H 0.131 0.869 35 H 0.137 0.863 36 H 0.136 0.864 37 H 0.406 0.594 38 H 0.075 0.925 39 H 0.070 0.930 40 H 0.081 0.919 41 H 0.062 0.938 42 H 0.385 0.615 43 H 0.256 0.744 44 H 0.054 0.946 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.011 29.060 11.012 31.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.085 4.085 3 C -0.143 4.143 4 C -0.077 4.077 5 C -0.159 4.159 6 C -0.102 4.102 7 C -0.129 4.129 8 C 0.024 3.976 9 O -0.085 6.085 10 C -0.082 4.082 11 C 0.381 3.619 12 O -0.393 6.393 13 N -0.360 5.360 14 C 0.008 3.992 15 C -0.148 4.148 16 H 0.107 0.893 17 C -0.180 4.180 18 C 0.054 3.946 19 H 0.093 0.907 20 N -0.351 5.351 21 C -0.376 4.376 22 H 0.088 0.912 23 C -0.209 4.209 24 N -0.580 5.580 25 Si 0.739 3.261 26 H -0.212 1.212 27 H -0.217 1.217 28 H -0.213 1.213 29 C -0.203 4.203 30 H 0.096 0.904 31 H 0.087 0.913 32 H 0.111 0.889 33 H 0.148 0.852 34 H 0.149 0.851 35 H 0.155 0.845 36 H 0.154 0.846 37 H 0.241 0.759 38 H 0.093 0.907 39 H 0.088 0.912 40 H 0.100 0.900 41 H 0.081 0.919 42 H 0.219 0.781 43 H 0.066 0.934 44 H 0.073 0.927 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -1.487 28.501 10.910 30.554 hybrid contribution 0.928 -0.335 -0.627 1.169 sum -0.559 28.166 10.283 29.990 Atomic orbital electron populations 1.20453 0.87377 1.04013 1.03146 1.21412 0.97078 0.89480 1.00491 1.19829 0.92389 0.94358 1.07692 1.20362 0.99854 0.90234 0.97232 1.20806 0.92237 1.00108 1.02724 1.21021 0.97565 0.93746 0.97887 1.20028 0.96877 0.91180 1.04855 1.19732 0.95554 0.81095 1.01236 1.84019 1.27078 1.20918 1.76462 1.21825 0.81049 0.94895 1.10461 1.16632 0.85959 0.81676 0.77606 1.90857 1.15298 1.82395 1.50739 1.45992 1.10001 1.06604 1.73370 1.21567 0.97129 0.77908 1.02579 1.22689 0.96721 0.95266 1.00099 0.89256 1.23424 1.01305 0.92891 1.00403 1.21515 0.95762 0.87729 0.89631 0.90746 1.42402 1.06624 1.41311 1.44739 1.19253 0.88628 1.13595 1.16113 0.91158 1.24775 0.96161 0.99848 1.00162 1.69650 1.14934 1.35871 1.37553 0.86260 0.80875 0.79576 0.79416 1.21240 1.21684 1.21256 1.23993 1.00491 1.01281 0.94491 0.90435 0.91306 0.88855 0.85243 0.85091 0.84516 0.84625 0.75863 0.90668 0.91206 0.90006 0.91896 0.78054 0.93397 0.92715 0.90274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.90 9.81 36.00 0.35 -0.55 16 2 C -0.08 -0.94 6.39 -102.28 -0.65 -1.59 16 3 C -0.14 -1.48 6.37 -105.19 -0.67 -2.15 16 4 C -0.06 -0.46 10.06 -39.62 -0.40 -0.86 16 5 C -0.14 -0.88 9.98 -39.94 -0.40 -1.28 16 6 C -0.08 -0.52 10.01 -39.52 -0.40 -0.92 16 7 C -0.11 -0.89 10.07 -39.45 -0.40 -1.29 16 8 C 0.07 0.78 7.41 -38.35 -0.28 0.49 16 9 O -0.18 -2.18 10.28 2.77 0.03 -2.15 16 10 C -0.03 -0.41 7.07 -36.91 -0.26 -0.67 16 11 C 0.60 8.04 7.79 -12.72 -0.10 7.94 16 12 O -0.51 -8.07 14.62 5.23 0.08 -7.99 16 13 N -0.71 -8.58 5.55 -61.53 -0.34 -8.92 16 14 C 0.13 1.69 5.51 -4.05 -0.02 1.66 16 15 C -0.13 -1.70 3.75 -89.72 -0.34 -2.04 16 16 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 17 C -0.14 -2.19 7.39 -25.92 -0.19 -2.39 16 18 C 0.17 3.18 4.47 -67.11 -0.30 2.88 16 19 H 0.07 1.42 8.11 -51.93 -0.42 1.00 16 20 N -0.71 -17.74 5.41 -52.63 -0.28 -18.02 16 21 C -0.24 -6.77 9.97 -15.06 -0.15 -6.92 16 22 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 23 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 24 N -0.93 -28.17 13.06 55.49 0.72 -27.45 16 25 Si 0.91 22.35 29.55 -169.99 -5.02 17.33 16 26 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 27 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 28 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 29 C -0.16 -2.67 7.45 -25.82 -0.19 -2.86 16 30 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.09 1.05 6.38 -51.93 -0.33 0.72 16 33 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 34 H 0.13 0.48 8.06 -52.49 -0.42 0.06 16 35 H 0.14 0.46 8.06 -52.48 -0.42 0.04 16 36 H 0.14 0.84 8.06 -52.48 -0.42 0.41 16 37 H 0.41 4.25 8.19 -40.82 -0.33 3.92 16 38 H 0.08 1.08 7.85 -51.93 -0.41 0.68 16 39 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 40 H 0.08 1.33 8.07 -51.93 -0.42 0.91 16 41 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 42 H 0.39 10.20 7.90 -40.82 -0.32 9.88 16 43 H 0.26 7.51 8.31 -40.82 -0.34 7.18 16 44 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 45 H 0.08 1.44 7.90 -51.93 -0.41 1.03 16 LS Contribution 380.41 15.07 5.73 5.73 Total: -1.00 -32.38 380.41 -10.00 -42.38 By element: Atomic # 1 Polarization: 16.53 SS G_CDS: -6.42 Total: 10.11 kcal Atomic # 6 Polarization: -6.53 SS G_CDS: -4.49 Total: -11.02 kcal Atomic # 7 Polarization: -54.49 SS G_CDS: 0.10 Total: -54.39 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: 0.10 Total: -10.14 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.38 -10.00 -42.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086267438.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.824 kcal (2) G-P(sol) polarization free energy of solvation -32.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds