Wall clock time and date at job start Tue Mar 31 2020 15:52:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.46250 * 126.95939 * 2 1 4 4 C 1.39699 * 134.18972 * 0.02562 * 3 2 1 5 5 C 1.36622 * 119.70847 * 180.27606 * 4 3 2 6 6 C 1.38833 * 120.44515 * 359.97438 * 5 4 3 7 7 C 1.37794 * 120.74418 * 0.02562 * 6 5 4 8 8 C 1.39024 * 119.85594 * 359.96411 * 7 6 5 9 9 O 1.34712 * 133.24281 * 180.02562 * 8 7 6 10 10 C 1.34951 * 110.86308 * 179.97438 * 9 8 7 11 11 C 1.46972 * 125.13265 * 179.97438 * 10 9 8 12 12 O 1.21658 * 120.00347 * 180.02562 * 11 10 9 13 13 N 1.34780 * 120.00305 * 0.02916 * 11 10 9 14 14 C 1.46500 * 120.00380 * 180.02562 * 13 11 10 15 15 C 1.52994 * 109.47262 * 180.02562 * 14 13 11 16 16 H 1.08999 * 112.90988 * 43.74349 * 15 14 13 17 17 C 1.53781 * 113.61620 * 174.99790 * 15 14 13 18 18 C 1.53781 * 87.08131 * 139.98066 * 17 15 14 19 19 H 1.09000 * 113.61724 * 89.20383 * 18 17 15 20 20 N 1.46506 * 113.61270 * 220.02225 * 18 17 15 21 21 C 1.36938 * 119.99589 * 203.47195 * 20 18 17 22 22 H 1.07999 * 120.00325 * 359.97438 * 21 20 18 23 23 C 1.38815 * 119.99408 * 179.97438 * 21 20 18 24 24 N 1.31617 * 120.00325 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99550 * 179.97438 * 23 21 20 26 26 H 1.48495 * 109.47349 * 59.99998 * 25 23 21 27 27 H 1.48505 * 109.47077 * 180.02562 * 25 23 21 28 28 H 1.48500 * 109.47093 * 299.99919 * 25 23 21 29 29 C 1.53782 * 87.17496 * 334.60808 * 18 17 15 30 30 H 1.09000 * 109.47123 * 270.18815 * 1 2 3 31 31 H 1.08998 * 109.47397 * 30.19055 * 1 2 3 32 32 H 1.09004 * 109.46904 * 150.19126 * 1 2 3 33 33 H 1.07998 * 120.14822 * 0.30023 * 4 3 2 34 34 H 1.08001 * 119.77607 * 179.97438 * 5 4 3 35 35 H 1.08006 * 119.62962 * 179.97438 * 6 5 4 36 36 H 1.08007 * 120.07375 * 180.02562 * 7 6 5 37 37 H 0.97002 * 119.99248 * 359.97438 * 13 11 10 38 38 H 1.08997 * 109.47115 * 59.99481 * 14 13 11 39 39 H 1.08999 * 109.46704 * 300.00016 * 14 13 11 40 40 H 1.09003 * 113.61141 * 25.42888 * 17 15 14 41 41 H 1.09002 * 113.61683 * 254.52852 * 17 15 14 42 42 H 0.96995 * 120.00050 * 23.19403 * 20 18 17 43 43 H 0.97000 * 119.99693 * 180.02562 * 24 23 21 44 44 H 1.08994 * 113.61532 * 139.93563 * 29 18 17 45 45 H 1.08994 * 113.61779 * 270.84917 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3863 1.1686 0.0000 4 6 2.1713 2.5490 0.0004 5 6 3.2397 3.4006 -0.0054 6 6 4.5358 2.9032 -0.0113 7 6 4.7691 1.5451 -0.0118 8 6 3.6980 0.6589 -0.0057 9 8 3.6125 -0.6856 -0.0041 10 6 2.3236 -1.0852 0.0032 11 6 1.8717 -2.4837 0.0063 12 8 0.6821 -2.7386 0.0126 13 7 2.7751 -3.4839 0.0023 14 6 2.3246 -4.8779 0.0048 15 6 3.5404 -5.8067 -0.0001 16 1 4.3209 -5.4877 0.6905 17 6 3.1783 -7.2961 0.1249 18 6 4.2813 -7.5703 -0.9110 19 1 5.2641 -7.7349 -0.4692 20 7 3.9210 -8.5945 -1.8947 21 6 4.9022 -9.2861 -2.5536 22 1 5.9416 -9.0762 -2.3486 23 6 4.5608 -10.2569 -3.4853 24 7 3.2941 -10.5123 -3.7356 25 14 5.8992 -11.1998 -4.3848 26 1 6.7394 -11.9273 -3.4000 27 1 5.2772 -12.1718 -5.3194 28 1 6.7450 -10.2493 -5.1506 29 6 4.0635 -6.1325 -1.4110 30 1 -0.3633 0.0034 1.0277 31 1 -0.3634 0.8882 -0.5168 32 1 -0.3633 -0.8917 -0.5109 33 1 1.1651 2.9412 0.0058 34 1 3.0748 4.4679 -0.0055 35 1 5.3707 3.5883 -0.0163 36 1 5.7819 1.1700 -0.0160 37 1 3.7235 -3.2806 -0.0031 38 1 1.7197 -5.0659 -0.8822 39 1 1.7283 -5.0654 0.8977 40 1 2.1758 -7.5331 -0.2315 41 1 3.3891 -7.7156 1.1086 42 1 2.9875 -8.7856 -2.0762 43 1 3.0556 -11.1909 -4.3863 44 1 4.9879 -5.6139 -1.6654 45 1 3.3035 -6.0508 -2.1880 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086267438.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:52:01 Heat of formation + Delta-G solvation = -1.430961 kcal Electronic energy + Delta-G solvation = -26299.589566 eV Core-core repulsion = 22476.267222 eV Total energy + Delta-G solvation = -3823.322344 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.60790 -40.89981 -39.80271 -38.80826 -36.25343 -35.21191 -34.81461 -32.27643 -31.54476 -31.06756 -29.40648 -28.06576 -26.47825 -25.95803 -24.80263 -23.74065 -22.52162 -21.99575 -21.18701 -20.55509 -19.38916 -18.94781 -18.10771 -17.62080 -17.51237 -16.89459 -16.74189 -16.40836 -16.00820 -15.88135 -15.42416 -15.12282 -14.99337 -14.76193 -14.54691 -14.39315 -14.09868 -13.79765 -13.44795 -13.29106 -13.24849 -13.24065 -13.03170 -12.93210 -12.77383 -12.63384 -12.25702 -12.10320 -11.94132 -11.66760 -11.57327 -11.26731 -11.05316 -10.97793 -10.81301 -10.27094 -9.69340 -9.23164 -8.97958 -7.94503 -5.22856 -0.52259 0.32405 0.74585 1.35758 1.46759 1.49861 1.55916 1.94825 2.03323 2.56599 2.69661 3.29205 3.37361 3.50654 3.66943 3.70569 3.75004 3.88237 3.93488 4.11183 4.24103 4.28528 4.32561 4.38827 4.40202 4.49934 4.53590 4.62067 4.69194 4.71950 4.88713 4.95095 4.97162 4.98407 5.02381 5.13259 5.17747 5.24685 5.33794 5.37226 5.39597 5.46751 5.51299 5.54892 5.70903 5.98395 6.27639 6.34037 6.89648 7.33203 8.11637 8.33473 9.28672 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.020540 B = 0.001984 C = 0.001889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.899387 B =14106.892476 C =14820.606109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.081 4.081 3 C -0.165 4.165 4 C -0.066 4.066 5 C -0.136 4.136 6 C -0.072 4.072 7 C -0.125 4.125 8 C 0.047 3.953 9 O -0.193 6.193 10 C -0.062 4.062 11 C 0.596 3.404 12 O -0.545 6.545 13 N -0.702 5.702 14 C 0.137 3.863 15 C -0.098 4.098 16 H 0.119 0.881 17 C -0.132 4.132 18 C 0.143 3.857 19 H 0.079 0.921 20 N -0.730 5.730 21 C -0.243 4.243 22 H 0.078 0.922 23 C -0.080 4.080 24 N -0.971 5.971 25 Si 0.974 3.026 26 H -0.276 1.276 27 H -0.297 1.297 28 H -0.278 1.278 29 C -0.156 4.156 30 H 0.085 0.915 31 H 0.091 0.909 32 H 0.073 0.927 33 H 0.149 0.851 34 H 0.164 0.836 35 H 0.172 0.828 36 H 0.150 0.850 37 H 0.415 0.585 38 H 0.056 0.944 39 H 0.077 0.923 40 H 0.071 0.929 41 H 0.081 0.919 42 H 0.372 0.628 43 H 0.250 0.750 44 H 0.064 0.936 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.669 32.165 12.135 34.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.085 4.085 3 C -0.166 4.166 4 C -0.084 4.084 5 C -0.154 4.154 6 C -0.090 4.090 7 C -0.144 4.144 8 C -0.001 4.001 9 O -0.096 6.096 10 C -0.111 4.111 11 C 0.382 3.618 12 O -0.425 6.425 13 N -0.352 5.352 14 C 0.014 3.986 15 C -0.117 4.117 16 H 0.137 0.863 17 C -0.172 4.172 18 C 0.034 3.966 19 H 0.097 0.903 20 N -0.367 5.367 21 C -0.375 4.375 22 H 0.096 0.904 23 C -0.272 4.272 24 N -0.622 5.622 25 Si 0.803 3.197 26 H -0.202 1.202 27 H -0.224 1.224 28 H -0.205 1.205 29 C -0.197 4.197 30 H 0.104 0.896 31 H 0.110 0.890 32 H 0.092 0.908 33 H 0.167 0.833 34 H 0.182 0.818 35 H 0.189 0.811 36 H 0.168 0.832 37 H 0.252 0.748 38 H 0.075 0.925 39 H 0.095 0.905 40 H 0.089 0.911 41 H 0.100 0.900 42 H 0.204 0.796 43 H 0.059 0.941 44 H 0.082 0.918 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.247 31.656 12.075 33.881 hybrid contribution 0.454 -1.073 -0.920 1.485 sum 0.701 30.583 11.155 32.561 Atomic orbital electron populations 1.20470 0.86547 1.04097 1.03644 1.21779 0.97850 0.89947 0.98887 1.20050 0.91997 0.95286 1.09246 1.20718 1.01612 0.89228 0.96820 1.21270 0.91721 1.01604 1.00756 1.21527 0.98853 0.93365 0.95237 1.20414 0.97000 0.91737 1.05226 1.20272 0.96784 0.80796 1.02206 1.83956 1.26624 1.21886 1.77131 1.21609 0.81810 0.94517 1.13155 1.16780 0.85663 0.82344 0.77004 1.90831 1.16410 1.83046 1.52253 1.45873 1.10382 1.06009 1.72968 1.21400 0.96755 0.78343 1.02091 1.22512 0.97159 0.93876 0.98116 0.86262 1.23293 0.99394 0.94509 0.99968 1.21945 0.97282 0.87461 0.89929 0.90260 1.42617 1.05506 1.42590 1.45999 1.19688 0.89533 1.12928 1.15390 0.90395 1.25610 0.98241 1.01576 1.01804 1.69817 1.16909 1.36839 1.38625 0.85203 0.78283 0.78102 0.78128 1.20214 1.22380 1.20466 1.23785 1.00496 0.99433 0.95937 0.89646 0.89046 0.90823 0.83315 0.81810 0.81082 0.83190 0.74801 0.92539 0.90486 0.91081 0.90028 0.79582 0.94106 0.91751 0.92467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.76 9.81 71.23 0.70 -1.06 16 2 C -0.08 -1.88 6.39 -18.34 -0.12 -2.00 16 3 C -0.16 -3.32 6.37 -20.23 -0.13 -3.44 16 4 C -0.07 -0.88 10.06 22.24 0.22 -0.65 16 5 C -0.14 -1.20 9.98 22.03 0.22 -0.98 16 6 C -0.07 -0.64 10.01 22.31 0.22 -0.42 16 7 C -0.13 -1.78 10.07 22.35 0.23 -1.56 16 8 C 0.05 0.99 7.41 23.07 0.17 1.16 16 9 O -0.19 -4.66 10.28 -12.99 -0.13 -4.79 16 10 C -0.06 -1.58 7.07 24.00 0.17 -1.41 16 11 C 0.60 16.52 7.79 86.53 0.67 17.19 16 12 O -0.55 -17.76 14.62 -4.21 -0.06 -17.82 16 13 N -0.70 -16.86 5.55 -466.81 -2.59 -19.45 16 14 C 0.14 3.48 5.51 86.38 0.48 3.96 16 15 C -0.10 -2.44 3.75 -10.21 -0.04 -2.47 16 16 H 0.12 2.37 8.14 -2.39 -0.02 2.35 16 17 C -0.13 -4.01 7.39 31.12 0.23 -3.78 16 18 C 0.14 5.45 4.47 45.52 0.20 5.65 16 19 H 0.08 2.93 8.11 -2.39 -0.02 2.91 16 20 N -0.73 -36.98 5.41 -320.43 -1.73 -38.71 16 21 C -0.24 -13.58 9.97 84.03 0.84 -12.74 16 22 H 0.08 4.12 7.83 -2.91 -0.02 4.10 16 23 C -0.08 -4.67 5.50 84.86 0.47 -4.20 16 24 N -0.97 -60.36 13.06 21.65 0.28 -60.07 16 25 Si 0.97 46.49 29.55 68.60 2.03 48.52 16 26 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 27 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 28 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 29 C -0.16 -5.08 7.45 31.18 0.23 -4.85 16 30 H 0.09 1.48 8.14 -2.39 -0.02 1.47 16 31 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.07 1.73 6.38 -2.38 -0.02 1.72 16 33 H 0.15 1.29 8.06 -2.91 -0.02 1.26 16 34 H 0.16 0.38 8.06 -2.91 -0.02 0.35 16 35 H 0.17 0.32 8.06 -2.91 -0.02 0.30 16 36 H 0.15 1.56 8.06 -2.91 -0.02 1.54 16 37 H 0.42 8.39 8.19 -92.71 -0.76 7.63 16 38 H 0.06 1.67 7.85 -2.39 -0.02 1.65 16 39 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 40 H 0.07 2.33 8.07 -2.39 -0.02 2.31 16 41 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 42 H 0.37 20.44 7.90 -92.71 -0.73 19.71 16 43 H 0.25 15.14 8.31 -92.71 -0.77 14.37 16 44 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 45 H 0.06 2.13 7.90 -2.39 -0.02 2.12 16 Total: -1.00 -72.65 380.41 2.09 -70.56 By element: Atomic # 1 Polarization: 33.84 SS G_CDS: -0.47 Total: 33.37 kcal Atomic # 6 Polarization: -16.38 SS G_CDS: 4.77 Total: -11.61 kcal Atomic # 7 Polarization: -114.19 SS G_CDS: -4.04 Total: -118.23 kcal Atomic # 8 Polarization: -22.42 SS G_CDS: -0.20 Total: -22.61 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 2.03 Total: 48.52 kcal Total: -72.65 2.09 -70.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086267438.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.133 kcal (2) G-P(sol) polarization free energy of solvation -72.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds