Wall clock time and date at job start Tue Mar 31 2020 15:52:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.46253 * 126.95959 * 2 1 4 4 C 1.39701 * 134.19055 * 0.02562 * 3 2 1 5 5 C 1.36614 * 119.71047 * 180.02562 * 4 3 2 6 6 C 1.38832 * 120.44664 * 0.02562 * 5 4 3 7 7 C 1.37803 * 120.74300 * 359.96197 * 6 5 4 8 8 C 1.39021 * 119.85397 * 0.27311 * 7 6 5 9 9 O 1.34715 * 133.24628 * 180.33339 * 8 7 6 10 10 C 1.34946 * 110.86845 * 179.61001 * 9 8 7 11 11 C 1.46983 * 125.13354 * 179.74583 * 10 9 8 12 12 O 1.21649 * 119.99772 * 180.02562 * 11 10 9 13 13 N 1.34773 * 119.99948 * 0.03586 * 11 10 9 14 14 C 1.46503 * 120.00212 * 179.97438 * 13 11 10 15 15 C 1.53002 * 109.47080 * 180.02562 * 14 13 11 16 16 H 1.08996 * 112.85076 * 314.66715 * 15 14 13 17 17 C 1.53779 * 113.61454 * 85.86848 * 15 14 13 18 18 C 1.53957 * 87.02074 * 139.94776 * 17 15 14 19 19 H 1.08990 * 113.74187 * 220.05970 * 18 17 15 20 20 N 1.46495 * 113.53289 * 89.18724 * 18 17 15 21 21 C 1.36936 * 119.99825 * 107.51140 * 20 18 17 22 22 H 1.07995 * 120.00346 * 359.97438 * 21 20 18 23 23 C 1.38819 * 119.99888 * 179.97438 * 21 20 18 24 24 N 1.31625 * 119.99637 * 179.97438 * 23 21 20 25 25 Si 1.86795 * 120.00113 * 359.97438 * 23 21 20 26 26 H 1.48499 * 109.47095 * 90.00262 * 25 23 21 27 27 H 1.48497 * 109.47115 * 209.99937 * 25 23 21 28 28 H 1.48499 * 109.47221 * 330.00190 * 25 23 21 29 29 C 1.53780 * 113.61071 * 183.47335 * 15 14 13 30 30 H 1.08996 * 109.47152 * 90.00023 * 1 2 3 31 31 H 1.09002 * 109.46838 * 209.99848 * 1 2 3 32 32 H 1.09003 * 109.46932 * 329.99752 * 1 2 3 33 33 H 1.08002 * 120.14152 * 359.97393 * 4 3 2 34 34 H 1.08001 * 119.77972 * 179.97438 * 5 4 3 35 35 H 1.08000 * 119.63382 * 179.97438 * 6 5 4 36 36 H 1.08002 * 120.07034 * 179.97438 * 7 6 5 37 37 H 0.96999 * 120.00054 * 0.02562 * 13 11 10 38 38 H 1.08993 * 109.46935 * 300.00720 * 14 13 11 39 39 H 1.09005 * 109.46314 * 60.00479 * 14 13 11 40 40 H 1.09000 * 113.61116 * 254.52952 * 17 15 14 41 41 H 1.09002 * 113.61401 * 25.42705 * 17 15 14 42 42 H 0.97006 * 120.00415 * 287.50429 * 20 18 17 43 43 H 0.97001 * 119.99430 * 179.97438 * 24 23 21 44 44 H 1.09001 * 113.61722 * 334.57346 * 29 15 14 45 45 H 1.09001 * 113.61506 * 105.38887 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3863 1.1686 0.0000 4 6 2.1714 2.5490 0.0004 5 6 3.2397 3.4006 -0.0002 6 6 4.5358 2.9032 -0.0019 7 6 4.7692 1.5451 -0.0021 8 6 3.6981 0.6589 -0.0064 9 8 3.6125 -0.6856 -0.0020 10 6 2.3236 -1.0852 -0.0010 11 6 1.8716 -2.4838 -0.0019 12 8 0.6821 -2.7385 -0.0014 13 7 2.7750 -3.4839 -0.0030 14 6 2.3246 -4.8780 -0.0032 15 6 3.5404 -5.8068 -0.0039 16 1 4.3052 -5.5024 -0.7184 17 6 4.0920 -6.1005 1.4012 18 6 4.3004 -7.5508 0.9286 19 1 4.0484 -8.2980 1.6810 20 7 5.6090 -7.7829 0.3123 21 6 6.5634 -8.5013 0.9818 22 1 6.3516 -8.8965 1.9643 23 6 7.8032 -8.7216 0.3976 24 7 8.7207 -9.4118 1.0413 25 14 8.1695 -8.0387 -1.3021 26 1 8.7488 -6.6774 -1.1743 27 1 9.1386 -8.9261 -1.9938 28 1 6.9122 -7.9697 -2.0893 29 6 3.1760 -7.2983 -0.0896 30 1 -0.3633 0.0000 -1.0276 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5139 33 1 1.1651 2.9412 0.0005 34 1 3.0748 4.4679 -0.0003 35 1 5.3707 3.5883 -0.0028 36 1 5.7820 1.1700 -0.0038 37 1 3.7235 -3.2807 -0.0028 38 1 1.7245 -5.0660 0.8870 39 1 1.7233 -5.0652 -0.8930 40 1 5.0207 -5.5752 1.6242 41 1 3.3482 -6.0014 2.1918 42 1 5.7995 -7.4277 -0.5701 43 1 9.5869 -9.5660 0.6329 44 1 2.1812 -7.5275 0.2926 45 1 3.3650 -7.7384 -1.0687 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086547822.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:52:06 Heat of formation + Delta-G solvation = 23.617549 kcal Electronic energy + Delta-G solvation = -26595.530294 eV Core-core repulsion = 22773.294135 eV Total energy + Delta-G solvation = -3822.236159 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.85576 -39.88813 -38.69679 -38.17421 -35.09925 -34.11269 -33.27827 -30.99894 -30.79937 -30.30004 -28.50305 -27.16295 -25.22024 -24.42661 -23.33581 -23.04018 -21.81829 -21.10751 -20.39544 -18.95357 -18.18741 -17.69022 -17.39998 -16.78090 -16.64891 -16.02421 -15.45140 -15.23245 -14.88550 -14.53382 -14.40019 -14.16740 -13.81625 -13.60970 -13.59600 -13.38591 -13.08396 -12.82733 -12.65384 -12.62894 -12.51700 -12.17202 -12.07631 -11.62687 -11.40722 -11.34567 -10.95270 -10.56272 -10.51248 -10.27179 -10.22548 -10.02257 -9.70481 -9.58147 -9.26894 -9.04391 -8.94564 -8.51559 -7.33501 -5.82489 -3.18806 0.21439 0.94103 1.48787 2.15931 2.89438 2.94452 3.28528 3.32817 3.35295 3.41261 4.06369 4.16919 4.44757 4.53442 4.57045 4.67441 4.82453 4.86445 4.88061 4.97225 5.02224 5.08154 5.25857 5.34782 5.38918 5.40460 5.45080 5.59189 5.62538 5.68715 5.75806 5.79495 5.84993 5.90892 6.00685 6.03769 6.08349 6.14043 6.18820 6.22597 6.43958 6.59200 6.65941 6.69172 6.85545 7.26640 7.84620 7.95290 8.37219 9.14830 9.87058 10.06105 11.35583 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.014686 B = 0.002480 C = 0.002194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1906.159257 B =11286.937134 C =12758.624968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.082 4.082 3 C -0.142 4.142 4 C -0.059 4.059 5 C -0.140 4.140 6 C -0.084 4.084 7 C -0.110 4.110 8 C 0.073 3.927 9 O -0.182 6.182 10 C -0.034 4.034 11 C 0.597 3.403 12 O -0.518 6.518 13 N -0.710 5.710 14 C 0.130 3.870 15 C -0.125 4.125 16 H 0.090 0.910 17 C -0.167 4.167 18 C 0.173 3.827 19 H 0.072 0.928 20 N -0.730 5.730 21 C -0.247 4.247 22 H 0.092 0.908 23 C 0.006 3.994 24 N -0.932 5.932 25 Si 0.884 3.116 26 H -0.284 1.284 27 H -0.290 1.290 28 H -0.277 1.277 29 C -0.147 4.147 30 H 0.077 0.923 31 H 0.092 0.908 32 H 0.068 0.932 33 H 0.130 0.870 34 H 0.131 0.869 35 H 0.137 0.863 36 H 0.137 0.863 37 H 0.408 0.592 38 H 0.073 0.927 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.073 0.927 42 H 0.362 0.638 43 H 0.260 0.740 44 H 0.082 0.918 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.059 25.827 -3.142 30.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.085 4.085 3 C -0.143 4.143 4 C -0.077 4.077 5 C -0.158 4.158 6 C -0.102 4.102 7 C -0.129 4.129 8 C 0.025 3.975 9 O -0.084 6.084 10 C -0.083 4.083 11 C 0.383 3.617 12 O -0.396 6.396 13 N -0.360 5.360 14 C 0.007 3.993 15 C -0.144 4.144 16 H 0.109 0.891 17 C -0.208 4.208 18 C 0.061 3.939 19 H 0.090 0.910 20 N -0.370 5.370 21 C -0.377 4.377 22 H 0.110 0.890 23 C -0.190 4.190 24 N -0.579 5.579 25 Si 0.714 3.286 26 H -0.210 1.210 27 H -0.216 1.216 28 H -0.203 1.203 29 C -0.187 4.187 30 H 0.095 0.905 31 H 0.111 0.889 32 H 0.087 0.913 33 H 0.147 0.853 34 H 0.149 0.851 35 H 0.155 0.845 36 H 0.155 0.845 37 H 0.244 0.756 38 H 0.091 0.909 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.091 0.909 42 H 0.195 0.805 43 H 0.070 0.930 44 H 0.101 0.899 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -15.512 25.227 -2.974 29.763 hybrid contribution 0.986 0.742 -1.267 1.769 sum -14.526 25.968 -4.241 30.056 Atomic orbital electron populations 1.20446 0.87406 1.03925 1.03138 1.21400 0.97035 0.89487 1.00542 1.19826 0.92359 0.94358 1.07794 1.20351 0.99827 0.90213 0.97349 1.20805 0.92235 1.00106 1.02697 1.21031 0.97582 0.93743 0.97814 1.20058 0.96980 0.91191 1.04658 1.19739 0.95559 0.81064 1.01177 1.84034 1.27004 1.20963 1.76388 1.21803 0.81128 0.94865 1.10550 1.16628 0.85905 0.81704 0.77493 1.90839 1.15291 1.82476 1.50990 1.46003 1.10188 1.06547 1.73254 1.21593 0.97143 0.78206 1.02333 1.22773 0.96465 0.95040 1.00091 0.89132 1.23901 1.00629 1.01888 0.94402 1.21032 0.85126 0.93836 0.93879 0.90994 1.42519 1.11170 1.64571 1.18735 1.19113 0.91789 1.25714 1.01071 0.89006 1.24688 0.96276 1.00063 0.98020 1.69702 1.05717 1.44379 1.38078 0.86565 0.77725 0.78766 0.85567 1.21039 1.21633 1.20318 1.23458 1.00075 0.93774 1.01404 0.90456 0.88922 0.91317 0.85259 0.85079 0.84477 0.84544 0.75642 0.90860 0.91246 0.91241 0.90863 0.80516 0.92970 0.89911 0.91349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.87 9.81 36.00 0.35 -0.52 16 2 C -0.08 -0.94 6.39 -102.28 -0.65 -1.59 16 3 C -0.14 -1.52 6.37 -105.19 -0.67 -2.19 16 4 C -0.06 -0.48 10.06 -39.62 -0.40 -0.88 16 5 C -0.14 -0.93 9.98 -39.95 -0.40 -1.32 16 6 C -0.08 -0.56 10.01 -39.52 -0.40 -0.96 16 7 C -0.11 -0.97 10.07 -39.45 -0.40 -1.36 16 8 C 0.07 0.82 7.41 -38.35 -0.28 0.54 16 9 O -0.18 -2.28 10.28 2.78 0.03 -2.25 16 10 C -0.03 -0.43 7.07 -36.91 -0.26 -0.69 16 11 C 0.60 7.95 7.79 -12.72 -0.10 7.85 16 12 O -0.52 -7.78 14.62 5.23 0.08 -7.71 16 13 N -0.71 -8.67 5.55 -61.52 -0.34 -9.01 16 14 C 0.13 1.59 5.50 -4.04 -0.02 1.56 16 15 C -0.12 -1.70 3.62 -89.81 -0.33 -2.02 16 16 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 17 C -0.17 -2.60 7.44 -25.83 -0.19 -2.79 16 18 C 0.17 3.16 4.57 -67.03 -0.31 2.85 16 19 H 0.07 1.35 8.10 -51.93 -0.42 0.93 16 20 N -0.73 -16.70 5.11 -52.55 -0.27 -16.97 16 21 C -0.25 -6.84 10.45 -15.06 -0.16 -7.00 16 22 H 0.09 2.72 8.06 -52.49 -0.42 2.30 16 23 C 0.01 0.16 5.50 -17.43 -0.10 0.06 16 24 N -0.93 -28.94 13.97 55.49 0.78 -28.17 16 25 Si 0.88 21.74 27.73 -169.99 -4.71 17.02 16 26 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 27 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 28 H -0.28 -6.40 6.52 56.52 0.37 -6.03 16 29 C -0.15 -2.14 7.39 -25.92 -0.19 -2.33 16 30 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.09 0.99 6.38 -51.93 -0.33 0.66 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 34 H 0.13 0.52 8.06 -52.49 -0.42 0.09 16 35 H 0.14 0.54 8.06 -52.49 -0.42 0.12 16 36 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 37 H 0.41 4.65 8.19 -40.82 -0.33 4.31 16 38 H 0.07 0.90 7.87 -51.93 -0.41 0.49 16 39 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 41 H 0.07 1.02 7.92 -51.93 -0.41 0.61 16 42 H 0.36 8.13 5.76 -40.82 -0.24 7.89 16 43 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 44 H 0.08 1.02 8.10 -51.93 -0.42 0.60 16 45 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 377.19 15.07 5.68 5.68 Total: -1.00 -32.71 377.19 -9.64 -42.34 By element: Atomic # 1 Polarization: 16.21 SS G_CDS: -6.38 Total: 9.83 kcal Atomic # 6 Polarization: -6.29 SS G_CDS: -4.50 Total: -10.78 kcal Atomic # 7 Polarization: -54.31 SS G_CDS: 0.17 Total: -54.15 kcal Atomic # 8 Polarization: -10.06 SS G_CDS: 0.11 Total: -9.95 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.71 Total: 17.02 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.71 -9.64 -42.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086547822.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.960 kcal (2) G-P(sol) polarization free energy of solvation -32.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.343 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds