Wall clock time and date at job start Tue Mar 31 2020 15:47:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50697 * 120.00377 * 2 1 4 4 C 1.53005 * 109.46937 * 125.00023 * 3 2 1 5 5 N 1.46898 * 109.46842 * 179.97438 * 4 3 2 6 6 C 1.47016 * 110.99994 * 66.05282 * 5 4 3 7 7 C 1.53097 * 109.25580 * 182.38964 * 6 5 4 8 8 O 1.43014 * 109.26075 * 303.14382 * 7 6 5 9 9 C 1.43023 * 113.73189 * 58.67394 * 8 7 6 10 10 C 1.52999 * 109.50637 * 61.26412 * 9 8 7 11 11 C 1.53000 * 109.50314 * 181.39349 * 9 8 7 12 12 N 1.46508 * 109.47193 * 300.00186 * 11 9 8 13 13 C 1.34775 * 119.99810 * 179.97438 * 12 11 9 14 14 O 1.21276 * 120.00241 * 0.02562 * 13 12 11 15 15 C 1.50701 * 119.99560 * 179.97438 * 13 12 11 16 16 S 1.81000 * 109.46844 * 180.02562 * 15 13 12 17 17 C 1.76205 * 99.99950 * 180.02562 * 16 15 13 18 18 H 1.07997 * 119.99605 * 0.02562 * 17 16 15 19 19 C 1.38803 * 119.99609 * 179.97438 * 17 16 15 20 20 N 1.31624 * 120.00316 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99535 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47203 * 60.00233 * 21 19 17 23 23 H 1.48498 * 109.47042 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47148 * 300.00287 * 21 19 17 25 25 C 1.47015 * 110.99642 * 189.68284 * 5 4 3 26 26 H 1.08000 * 120.00116 * 179.97438 * 1 2 3 27 27 H 1.07999 * 119.99394 * 359.97438 * 1 2 3 28 28 H 1.08006 * 119.99543 * 180.02562 * 2 1 3 29 29 H 1.09001 * 109.46954 * 5.00615 * 3 2 1 30 30 H 1.09000 * 109.47573 * 245.00409 * 3 2 1 31 31 H 1.09001 * 109.46814 * 60.00507 * 4 3 2 32 32 H 1.08991 * 109.47399 * 300.00277 * 4 3 2 33 33 H 1.09000 * 109.50136 * 302.32362 * 6 5 4 34 34 H 1.08996 * 109.50988 * 62.41201 * 6 5 4 35 35 H 1.08999 * 109.50517 * 63.08608 * 7 6 5 36 36 H 1.09005 * 109.50389 * 183.17021 * 7 6 5 37 37 H 1.09006 * 109.47354 * 59.99836 * 10 9 8 38 38 H 1.09000 * 109.46904 * 179.97438 * 10 9 8 39 39 H 1.08991 * 109.47415 * 299.99780 * 10 9 8 40 40 H 1.08997 * 109.47435 * 59.99646 * 11 9 8 41 41 H 1.09000 * 109.47338 * 180.02562 * 11 9 8 42 42 H 0.96998 * 119.99681 * 359.97438 * 12 11 9 43 43 H 1.09001 * 109.47447 * 299.99881 * 15 13 12 44 44 H 1.08999 * 109.47315 * 60.00493 * 15 13 12 45 45 H 0.96999 * 119.99565 * 179.97438 * 20 19 17 46 46 H 1.08999 * 109.50673 * 297.54208 * 25 5 4 47 47 H 1.09004 * 109.50788 * 57.67624 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 3.0351 1.3329 1.1817 5 7 3.7701 2.6048 1.1813 6 6 2.8675 3.7350 1.4441 7 6 3.6617 5.0420 1.3757 8 8 4.7442 4.9856 2.3086 9 6 5.6435 3.8969 2.0817 10 6 6.2778 4.0384 0.6965 11 6 6.7390 3.9081 3.1497 12 7 7.4759 5.1724 3.0802 13 6 8.4934 5.4071 3.9324 14 8 8.7992 4.5715 4.7565 15 6 9.2517 6.7074 3.8605 16 16 10.5476 6.7207 5.1241 17 6 11.2532 8.3068 4.8221 18 1 10.8552 8.9344 4.0385 19 6 12.3197 8.7498 5.5920 20 7 12.8044 7.9850 6.5473 21 14 13.0682 10.4310 5.2714 22 1 12.0317 11.4781 5.4579 23 1 14.1845 10.6654 6.2223 24 1 13.5829 10.4864 3.8796 25 6 4.8694 2.5782 2.1572 26 1 -0.5400 -0.9353 -0.0004 27 1 -0.5399 0.9354 0.0004 28 1 1.8500 -0.9354 -0.0004 29 1 1.3587 2.1316 0.0897 30 1 2.6214 1.4026 -0.9314 31 1 3.7400 0.5063 1.0920 32 1 2.4774 1.2354 2.1130 33 1 2.0760 3.7504 0.6948 34 1 2.4279 3.6269 2.4356 35 1 4.0559 5.1761 0.3684 36 1 3.0086 5.8783 1.6253 37 1 6.8256 4.9792 0.6421 38 1 6.9633 3.2087 0.5244 39 1 5.4966 4.0284 -0.0635 40 1 6.2861 3.8054 4.1358 41 1 7.4243 3.0785 2.9761 42 1 7.2316 5.8406 2.4209 43 1 9.7052 6.8095 2.8745 44 1 8.5668 7.5375 4.0332 45 1 13.5500 8.2945 7.0851 46 1 4.4624 2.4521 3.1604 47 1 5.5392 1.7493 1.9285 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107753289.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:47:13 Heat of formation + Delta-G solvation = -59.655483 kcal Electronic energy + Delta-G solvation = -25487.339851 eV Core-core repulsion = 21796.936654 eV Total energy + Delta-G solvation = -3690.403198 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.63776 -38.93375 -37.19881 -34.97547 -34.72229 -32.42078 -32.36986 -30.23882 -29.44261 -28.64627 -26.51599 -25.48119 -25.08242 -23.75781 -21.65658 -20.32711 -20.19874 -19.65894 -17.89329 -16.90798 -16.78626 -16.28178 -16.01532 -15.74605 -15.55672 -15.01726 -14.92426 -14.77212 -14.59047 -14.41666 -14.00235 -13.75330 -13.41352 -13.06640 -12.99301 -12.83563 -12.70143 -12.51752 -12.31967 -12.11194 -11.75213 -11.64788 -11.52572 -11.49102 -11.19837 -11.00955 -11.00851 -10.75481 -10.59596 -9.98997 -9.79916 -9.76908 -9.34152 -9.02778 -8.82439 -8.78985 -8.19381 -6.45575 -6.17961 -3.88126 1.78960 3.02116 3.17048 3.25493 3.26273 3.30866 3.39665 3.41203 3.81636 4.24217 4.29555 4.44437 4.50957 4.52770 4.63092 4.63818 4.78988 4.81178 4.87638 4.98670 5.15619 5.17007 5.18052 5.20417 5.27022 5.31413 5.36216 5.45407 5.50271 5.53031 5.60299 5.62162 5.66400 5.73218 5.84774 5.96005 6.04013 6.13857 6.20597 6.26886 6.48473 6.51373 6.66679 6.91208 7.62936 7.80180 8.38772 8.68778 9.27188 10.89426 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.041113 B = 0.001859 C = 0.001816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.879189 B =15056.571992 C =15413.696402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.153 4.153 3 C -0.091 4.091 4 C 0.059 3.941 5 N -0.533 5.533 6 C 0.014 3.986 7 C 0.060 3.940 8 O -0.369 6.369 9 C 0.109 3.891 10 C -0.169 4.169 11 C 0.139 3.861 12 N -0.730 5.730 13 C 0.532 3.468 14 O -0.521 6.521 15 C -0.152 4.152 16 S -0.060 6.060 17 C -0.536 4.536 18 H 0.072 0.928 19 C 0.074 3.926 20 N -0.868 5.868 21 Si 0.918 3.082 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.274 1.274 25 C 0.033 3.967 26 H 0.097 0.903 27 H 0.095 0.905 28 H 0.109 0.891 29 H 0.066 0.934 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.037 0.963 33 H 0.087 0.913 34 H 0.043 0.957 35 H 0.063 0.937 36 H 0.098 0.902 37 H 0.062 0.938 38 H 0.068 0.932 39 H 0.073 0.927 40 H 0.071 0.929 41 H 0.081 0.919 42 H 0.401 0.599 43 H 0.089 0.911 44 H 0.090 0.910 45 H 0.268 0.732 46 H 0.047 0.953 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.533 -12.766 -16.162 32.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.172 4.172 3 C -0.128 4.128 4 C -0.069 4.069 5 N -0.257 5.257 6 C -0.114 4.114 7 C -0.017 4.017 8 O -0.288 6.288 9 C 0.069 3.931 10 C -0.226 4.226 11 C 0.014 3.986 12 N -0.385 5.385 13 C 0.318 3.682 14 O -0.396 6.396 15 C -0.303 4.303 16 S 0.166 5.834 17 C -0.684 4.684 18 H 0.090 0.910 19 C -0.135 4.135 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.200 1.200 23 H -0.208 1.208 24 H -0.200 1.200 25 C -0.095 4.095 26 H 0.115 0.885 27 H 0.113 0.887 28 H 0.127 0.873 29 H 0.085 0.915 30 H 0.100 0.900 31 H 0.097 0.903 32 H 0.055 0.945 33 H 0.105 0.895 34 H 0.061 0.939 35 H 0.081 0.919 36 H 0.116 0.884 37 H 0.081 0.919 38 H 0.087 0.913 39 H 0.092 0.908 40 H 0.090 0.910 41 H 0.099 0.901 42 H 0.236 0.764 43 H 0.107 0.893 44 H 0.108 0.892 45 H 0.078 0.922 46 H 0.066 0.934 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -23.651 -13.990 -14.942 31.279 hybrid contribution -0.547 1.965 -0.879 2.221 sum -24.199 -12.024 -15.820 31.312 Atomic orbital electron populations 1.23872 0.95973 1.01887 1.01344 1.22927 0.96024 0.98482 0.99726 1.20762 0.97708 0.95182 0.99183 1.22080 0.95993 0.91485 0.97306 1.62194 1.10994 1.03112 1.49435 1.22868 0.95912 0.91814 1.00814 1.22679 0.88478 0.96395 0.94100 1.88114 1.37838 1.48837 1.53985 1.21771 0.89253 0.86323 0.95767 1.22279 1.01406 1.02733 0.96204 1.21189 0.91563 0.87821 0.98068 1.45851 1.34786 1.19449 1.38381 1.20289 0.79288 0.88580 0.80014 1.90694 1.66130 1.46835 1.35917 1.23518 1.03216 0.96742 1.06821 1.85374 1.33497 1.24111 1.40396 1.22842 1.20354 1.02827 1.22388 0.90978 1.24983 0.95829 0.98245 0.94481 1.70009 1.24515 1.36601 1.19210 0.86230 0.78589 0.82472 0.78237 1.19960 1.20832 1.19954 1.22660 0.93964 0.98348 0.94558 0.88473 0.88661 0.87284 0.91495 0.89995 0.90323 0.94507 0.89509 0.93856 0.91863 0.88395 0.91943 0.91302 0.90797 0.91042 0.90094 0.76398 0.89265 0.89204 0.92168 0.93433 0.89163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -0.99 14.32 29.01 0.42 -0.57 16 2 C -0.15 -0.81 9.52 -36.03 -0.34 -1.16 16 3 C -0.09 -0.49 5.59 -27.88 -0.16 -0.65 16 4 C 0.06 0.37 4.94 -3.82 -0.02 0.35 16 5 N -0.53 -3.88 4.09 -234.31 -0.96 -4.84 16 6 C 0.01 0.10 5.43 -3.71 -0.02 0.08 16 7 C 0.06 0.46 6.61 37.21 0.25 0.71 16 8 O -0.37 -3.90 10.03 -35.23 -0.35 -4.25 16 9 C 0.11 1.05 0.76 -90.57 -0.07 0.98 16 10 C -0.17 -1.46 8.00 37.16 0.30 -1.16 16 11 C 0.14 1.71 4.82 -4.04 -0.02 1.69 16 12 N -0.73 -10.43 5.15 -60.29 -0.31 -10.74 16 13 C 0.53 10.28 7.85 -10.99 -0.09 10.19 16 14 O -0.52 -12.11 15.86 5.56 0.09 -12.02 16 15 C -0.15 -3.16 6.16 36.01 0.22 -2.94 16 16 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 17 C -0.54 -15.48 9.50 30.94 0.29 -15.18 16 18 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 19 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 20 N -0.87 -26.42 13.22 55.49 0.73 -25.69 16 21 Si 0.92 21.61 29.55 -169.99 -5.02 16.58 16 22 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 25 C 0.03 0.28 4.34 -3.71 -0.02 0.26 16 26 H 0.10 0.42 8.06 -52.49 -0.42 -0.01 16 27 H 0.10 0.45 7.84 -52.49 -0.41 0.04 16 28 H 0.11 0.51 8.06 -52.48 -0.42 0.09 16 29 H 0.07 0.36 6.16 -51.93 -0.32 0.04 16 30 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.08 0.47 8.04 -51.93 -0.42 0.05 16 32 H 0.04 0.25 8.12 -51.93 -0.42 -0.17 16 33 H 0.09 0.48 6.37 -51.93 -0.33 0.15 16 34 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.06 0.46 6.49 -51.93 -0.34 0.12 16 36 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.56 6.88 -51.93 -0.36 0.20 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.07 0.61 6.13 -51.93 -0.32 0.29 16 40 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 41 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.40 4.89 7.20 -40.82 -0.29 4.60 16 43 H 0.09 1.70 8.14 -51.91 -0.42 1.28 16 44 H 0.09 1.75 8.14 -51.92 -0.42 1.32 16 45 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 46 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 47 H 0.09 0.67 8.09 -51.93 -0.42 0.25 16 LS Contribution 389.95 15.07 5.88 5.88 Total: -1.00 -34.39 389.95 -9.33 -43.73 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -7.82 Total: 0.60 kcal Atomic # 6 Polarization: -6.02 SS G_CDS: 0.65 Total: -5.37 kcal Atomic # 7 Polarization: -40.73 SS G_CDS: -0.54 Total: -41.27 kcal Atomic # 8 Polarization: -16.00 SS G_CDS: -0.27 Total: -16.27 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -34.39 -9.33 -43.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107753289.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.928 kcal (2) G-P(sol) polarization free energy of solvation -34.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds