Wall clock time and date at job start Tue Mar 31 2020 15:47:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50697 * 120.00377 * 2 1 4 4 C 1.53005 * 109.46937 * 125.00023 * 3 2 1 5 5 N 1.46898 * 109.46842 * 179.97438 * 4 3 2 6 6 C 1.47016 * 110.99994 * 66.05282 * 5 4 3 7 7 C 1.53097 * 109.25580 * 182.38964 * 6 5 4 8 8 O 1.43014 * 109.26075 * 303.14382 * 7 6 5 9 9 C 1.43023 * 113.73189 * 58.67394 * 8 7 6 10 10 C 1.52999 * 109.50637 * 61.26412 * 9 8 7 11 11 C 1.53000 * 109.50314 * 181.39349 * 9 8 7 12 12 N 1.46508 * 109.47193 * 300.00186 * 11 9 8 13 13 C 1.34775 * 119.99810 * 179.97438 * 12 11 9 14 14 O 1.21276 * 120.00241 * 0.02562 * 13 12 11 15 15 C 1.50701 * 119.99560 * 179.97438 * 13 12 11 16 16 S 1.81000 * 109.46844 * 180.02562 * 15 13 12 17 17 C 1.76205 * 99.99950 * 180.02562 * 16 15 13 18 18 H 1.07997 * 119.99605 * 0.02562 * 17 16 15 19 19 C 1.38803 * 119.99609 * 179.97438 * 17 16 15 20 20 N 1.31624 * 120.00316 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99535 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47203 * 60.00233 * 21 19 17 23 23 H 1.48498 * 109.47042 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47148 * 300.00287 * 21 19 17 25 25 C 1.47015 * 110.99642 * 189.68284 * 5 4 3 26 26 H 1.08000 * 120.00116 * 179.97438 * 1 2 3 27 27 H 1.07999 * 119.99394 * 359.97438 * 1 2 3 28 28 H 1.08006 * 119.99543 * 180.02562 * 2 1 3 29 29 H 1.09001 * 109.46954 * 5.00615 * 3 2 1 30 30 H 1.09000 * 109.47573 * 245.00409 * 3 2 1 31 31 H 1.09001 * 109.46814 * 60.00507 * 4 3 2 32 32 H 1.08991 * 109.47399 * 300.00277 * 4 3 2 33 33 H 1.09000 * 109.50136 * 302.32362 * 6 5 4 34 34 H 1.08996 * 109.50988 * 62.41201 * 6 5 4 35 35 H 1.08999 * 109.50517 * 63.08608 * 7 6 5 36 36 H 1.09005 * 109.50389 * 183.17021 * 7 6 5 37 37 H 1.09006 * 109.47354 * 59.99836 * 10 9 8 38 38 H 1.09000 * 109.46904 * 179.97438 * 10 9 8 39 39 H 1.08991 * 109.47415 * 299.99780 * 10 9 8 40 40 H 1.08997 * 109.47435 * 59.99646 * 11 9 8 41 41 H 1.09000 * 109.47338 * 180.02562 * 11 9 8 42 42 H 0.96998 * 119.99681 * 359.97438 * 12 11 9 43 43 H 1.09001 * 109.47447 * 299.99881 * 15 13 12 44 44 H 1.08999 * 109.47315 * 60.00493 * 15 13 12 45 45 H 0.96999 * 119.99565 * 179.97438 * 20 19 17 46 46 H 1.08999 * 109.50673 * 297.54208 * 25 5 4 47 47 H 1.09004 * 109.50788 * 57.67624 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 3.0351 1.3329 1.1817 5 7 3.7701 2.6048 1.1813 6 6 2.8675 3.7350 1.4441 7 6 3.6617 5.0420 1.3757 8 8 4.7442 4.9856 2.3086 9 6 5.6435 3.8969 2.0817 10 6 6.2778 4.0384 0.6965 11 6 6.7390 3.9081 3.1497 12 7 7.4759 5.1724 3.0802 13 6 8.4934 5.4071 3.9324 14 8 8.7992 4.5715 4.7565 15 6 9.2517 6.7074 3.8605 16 16 10.5476 6.7207 5.1241 17 6 11.2532 8.3068 4.8221 18 1 10.8552 8.9344 4.0385 19 6 12.3197 8.7498 5.5920 20 7 12.8044 7.9850 6.5473 21 14 13.0682 10.4310 5.2714 22 1 12.0317 11.4781 5.4579 23 1 14.1845 10.6654 6.2223 24 1 13.5829 10.4864 3.8796 25 6 4.8694 2.5782 2.1572 26 1 -0.5400 -0.9353 -0.0004 27 1 -0.5399 0.9354 0.0004 28 1 1.8500 -0.9354 -0.0004 29 1 1.3587 2.1316 0.0897 30 1 2.6214 1.4026 -0.9314 31 1 3.7400 0.5063 1.0920 32 1 2.4774 1.2354 2.1130 33 1 2.0760 3.7504 0.6948 34 1 2.4279 3.6269 2.4356 35 1 4.0559 5.1761 0.3684 36 1 3.0086 5.8783 1.6253 37 1 6.8256 4.9792 0.6421 38 1 6.9633 3.2087 0.5244 39 1 5.4966 4.0284 -0.0635 40 1 6.2861 3.8054 4.1358 41 1 7.4243 3.0785 2.9761 42 1 7.2316 5.8406 2.4209 43 1 9.7052 6.8095 2.8745 44 1 8.5668 7.5375 4.0332 45 1 13.5500 8.2945 7.0851 46 1 4.4624 2.4521 3.1604 47 1 5.5392 1.7493 1.9285 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107753289.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:47:12 Heat of formation + Delta-G solvation = -83.802385 kcal Electronic energy + Delta-G solvation = -25488.386940 eV Core-core repulsion = 21796.936654 eV Total energy + Delta-G solvation = -3691.450286 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.42938 -40.33450 -37.83057 -36.05526 -35.25589 -34.57412 -33.44922 -30.91941 -30.77097 -29.29306 -27.78032 -27.30020 -25.84967 -24.38674 -22.32046 -21.71348 -20.63640 -20.40136 -19.82530 -18.05433 -17.75454 -17.30234 -16.89990 -16.86010 -16.54777 -16.39206 -16.18490 -15.85289 -15.56820 -15.26647 -15.09955 -14.71410 -14.47411 -14.38432 -14.27050 -13.73725 -13.49142 -13.33668 -13.19378 -13.15797 -12.91065 -12.85211 -12.72368 -12.62787 -12.35705 -12.24363 -11.89920 -11.74415 -11.69247 -11.31702 -11.11772 -10.97132 -10.62810 -10.27333 -10.20991 -10.12573 -9.41249 -8.65592 -8.33265 -6.11549 1.27361 1.39833 1.45059 1.47433 1.57404 1.61934 2.22037 2.29276 2.65854 2.78989 3.00714 3.33558 3.66954 3.70167 3.86462 3.92116 3.99244 4.02044 4.17052 4.24175 4.29160 4.30564 4.40436 4.45749 4.49634 4.51863 4.61070 4.62887 4.67808 4.70025 4.78696 4.88042 4.94791 4.97963 5.03039 5.13173 5.16836 5.34148 5.39431 5.42803 5.75083 5.85892 5.90767 5.98462 6.20428 6.20868 6.49108 7.07745 7.23277 8.75748 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.041113 B = 0.001859 C = 0.001816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.879189 B =15056.571992 C =15413.696402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.161 4.161 3 C -0.084 4.084 4 C 0.061 3.939 5 N -0.531 5.531 6 C 0.016 3.984 7 C 0.057 3.943 8 O -0.392 6.392 9 C 0.117 3.883 10 C -0.164 4.164 11 C 0.136 3.864 12 N -0.704 5.704 13 C 0.534 3.466 14 O -0.567 6.567 15 C -0.129 4.129 16 S -0.149 6.149 17 C -0.549 4.549 18 H 0.083 0.917 19 C 0.014 3.986 20 N -0.911 5.911 21 Si 0.999 3.001 22 H -0.263 1.263 23 H -0.278 1.278 24 H -0.261 1.261 25 C 0.035 3.965 26 H 0.103 0.897 27 H 0.098 0.902 28 H 0.114 0.886 29 H 0.069 0.931 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.030 0.970 33 H 0.104 0.896 34 H 0.032 0.968 35 H 0.071 0.929 36 H 0.110 0.890 37 H 0.059 0.941 38 H 0.072 0.928 39 H 0.082 0.918 40 H 0.056 0.944 41 H 0.085 0.915 42 H 0.415 0.585 43 H 0.111 0.889 44 H 0.107 0.893 45 H 0.271 0.729 46 H 0.036 0.964 47 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.804 -11.825 -18.494 33.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.180 4.180 3 C -0.121 4.121 4 C -0.067 4.067 5 N -0.256 5.256 6 C -0.112 4.112 7 C -0.020 4.020 8 O -0.311 6.311 9 C 0.077 3.923 10 C -0.221 4.221 11 C 0.012 3.988 12 N -0.358 5.358 13 C 0.320 3.680 14 O -0.445 6.445 15 C -0.280 4.280 16 S 0.078 5.922 17 C -0.697 4.697 18 H 0.101 0.899 19 C -0.191 4.191 20 N -0.547 5.547 21 Si 0.820 3.180 22 H -0.187 1.187 23 H -0.203 1.203 24 H -0.186 1.186 25 C -0.093 4.093 26 H 0.122 0.878 27 H 0.116 0.884 28 H 0.132 0.868 29 H 0.087 0.913 30 H 0.099 0.901 31 H 0.100 0.900 32 H 0.048 0.952 33 H 0.123 0.877 34 H 0.051 0.949 35 H 0.090 0.910 36 H 0.128 0.872 37 H 0.078 0.922 38 H 0.091 0.909 39 H 0.100 0.900 40 H 0.074 0.926 41 H 0.103 0.897 42 H 0.252 0.748 43 H 0.129 0.871 44 H 0.125 0.875 45 H 0.080 0.920 46 H 0.054 0.946 47 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -24.975 -13.048 -17.325 33.078 hybrid contribution -0.301 1.602 -0.209 1.643 sum -25.275 -11.446 -17.533 32.822 Atomic orbital electron populations 1.24016 0.96059 1.02432 1.00894 1.23004 0.96210 0.98653 1.00113 1.20690 0.97441 0.95377 0.98612 1.22094 0.96096 0.91074 0.97411 1.62230 1.10971 1.03693 1.48679 1.22886 0.96108 0.91399 1.00827 1.22867 0.87956 0.97198 0.93937 1.88072 1.38727 1.49092 1.55211 1.21629 0.88594 0.86952 0.95108 1.22240 1.01612 1.02765 0.95491 1.21330 0.92262 0.86670 0.98558 1.45607 1.32917 1.20421 1.36889 1.20046 0.80068 0.87590 0.80272 1.90683 1.67755 1.48000 1.38095 1.23359 1.01292 0.98357 1.05000 1.85547 1.37074 1.25117 1.44486 1.23190 1.20795 1.02853 1.22827 0.89917 1.26125 0.96170 1.02841 0.93916 1.70177 1.25179 1.38973 1.20412 0.85001 0.77732 0.76642 0.78592 1.18733 1.20346 1.18598 1.22604 0.94468 0.97878 0.94388 0.87824 0.88355 0.86840 0.91272 0.90066 0.89953 0.95170 0.87746 0.94927 0.91039 0.87191 0.92162 0.90893 0.89965 0.92557 0.89714 0.74783 0.87095 0.87501 0.91986 0.94566 0.88222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.73 14.32 67.78 0.97 -0.76 16 2 C -0.16 -1.48 9.52 25.64 0.24 -1.23 16 3 C -0.08 -0.76 5.59 29.85 0.17 -0.60 16 4 C 0.06 0.67 4.94 86.31 0.43 1.09 16 5 N -0.53 -6.81 4.09 -895.22 -3.67 -10.48 16 6 C 0.02 0.19 5.43 86.31 0.47 0.66 16 7 C 0.06 0.75 6.61 72.01 0.48 1.23 16 8 O -0.39 -7.66 10.03 -148.98 -1.49 -9.16 16 9 C 0.12 2.08 0.76 -10.76 -0.01 2.08 16 10 C -0.16 -2.47 8.00 71.98 0.58 -1.89 16 11 C 0.14 3.27 4.82 86.38 0.42 3.69 16 12 N -0.70 -19.33 5.15 -463.05 -2.39 -21.72 16 13 C 0.53 20.50 7.85 87.66 0.69 21.19 16 14 O -0.57 -26.92 15.86 -3.02 -0.05 -26.97 16 15 C -0.13 -5.27 6.16 71.24 0.44 -4.83 16 16 S -0.15 -8.44 20.57 -56.49 -1.16 -9.60 16 17 C -0.55 -31.75 9.50 67.96 0.65 -31.11 16 18 H 0.08 4.43 7.80 -2.91 -0.02 4.41 16 19 C 0.01 0.82 5.49 84.86 0.47 1.29 16 20 N -0.91 -56.44 13.22 21.65 0.29 -56.16 16 21 Si 1.00 43.90 29.55 68.60 2.03 45.92 16 22 H -0.26 -10.97 7.11 99.48 0.71 -10.27 16 23 H -0.28 -11.90 7.11 99.48 0.71 -11.20 16 24 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 25 C 0.04 0.55 4.34 86.31 0.37 0.92 16 26 H 0.10 0.75 8.06 -2.91 -0.02 0.73 16 27 H 0.10 0.78 7.84 -2.91 -0.02 0.76 16 28 H 0.11 0.91 8.06 -2.91 -0.02 0.89 16 29 H 0.07 0.59 6.16 -2.39 -0.01 0.58 16 30 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.08 0.85 8.04 -2.39 -0.02 0.83 16 32 H 0.03 0.38 8.12 -2.39 -0.02 0.36 16 33 H 0.10 0.90 6.37 -2.39 -0.02 0.88 16 34 H 0.03 0.47 8.14 -2.39 -0.02 0.45 16 35 H 0.07 0.84 6.49 -2.39 -0.02 0.82 16 36 H 0.11 1.18 8.14 -2.38 -0.02 1.16 16 37 H 0.06 0.93 6.88 -2.38 -0.02 0.92 16 38 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.08 1.13 6.13 -2.39 -0.01 1.11 16 40 H 0.06 1.55 8.14 -2.39 -0.02 1.54 16 41 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 42 H 0.41 9.26 7.20 -92.71 -0.67 8.60 16 43 H 0.11 4.05 8.14 -2.40 -0.02 4.03 16 44 H 0.11 4.00 8.14 -2.40 -0.02 3.98 16 45 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 46 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 47 H 0.10 1.34 8.09 -2.38 -0.02 1.32 16 Total: -1.00 -75.65 389.95 0.19 -75.47 By element: Atomic # 1 Polarization: 20.69 SS G_CDS: 0.28 Total: 20.97 kcal Atomic # 6 Polarization: -14.62 SS G_CDS: 6.35 Total: -8.27 kcal Atomic # 7 Polarization: -82.59 SS G_CDS: -5.77 Total: -88.36 kcal Atomic # 8 Polarization: -34.59 SS G_CDS: -1.54 Total: -36.13 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.92 kcal Atomic # 16 Polarization: -8.44 SS G_CDS: -1.16 Total: -9.60 kcal Total: -75.65 0.19 -75.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107753289.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.337 kcal (2) G-P(sol) polarization free energy of solvation -75.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds