Wall clock time and date at job start Tue Mar 31 2020 15:09:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38664 * 120.05316 * 2 1 4 4 O 1.35894 * 120.02542 * 0.02860 * 3 2 1 5 5 C 1.38749 * 119.94390 * 180.02562 * 3 2 1 6 6 C 1.38200 * 120.05492 * 0.02562 * 5 3 2 7 7 C 1.38146 * 120.11161 * 359.97438 * 6 5 3 8 8 C 1.50703 * 119.97394 * 180.02562 * 7 6 5 9 9 N 1.46903 * 109.46966 * 254.62184 * 8 7 6 10 10 C 1.46906 * 111.00152 * 198.47203 * 9 8 7 11 11 C 1.50699 * 109.47226 * 71.51564 * 10 9 8 12 12 H 1.08004 * 119.99824 * 2.48044 * 11 10 9 13 13 C 1.37877 * 119.99896 * 182.47846 * 11 10 9 14 14 N 1.31509 * 120.00050 * 354.37333 * 13 11 10 15 15 Si 1.86802 * 119.99733 * 174.37548 * 13 11 10 16 16 H 1.48500 * 109.47133 * 5.00934 * 15 13 11 17 17 H 1.48508 * 109.46758 * 125.00755 * 15 13 11 18 18 H 1.48499 * 109.47171 * 245.00571 * 15 13 11 19 19 C 1.46895 * 111.00245 * 74.51247 * 9 8 7 20 20 C 1.50694 * 109.47325 * 189.99763 * 19 9 8 21 21 C 1.38676 * 120.42167 * 270.25418 * 20 19 9 22 22 C 1.38625 * 118.41957 * 180.24438 * 21 20 19 23 23 C 1.38230 * 119.16327 * 359.75230 * 22 21 20 24 24 N 1.31855 * 120.76342 * 359.97438 * 23 22 21 25 25 C 1.31888 * 121.72554 * 0.02562 * 24 23 22 26 26 C 1.38620 * 120.05743 * 180.28241 * 2 1 3 27 27 O 1.35895 * 120.02760 * 0.02562 * 26 2 1 28 28 H 1.08998 * 109.47627 * 94.69700 * 1 2 3 29 29 H 1.09003 * 109.46613 * 214.69355 * 1 2 3 30 30 H 1.08999 * 109.47266 * 334.69251 * 1 2 3 31 31 H 0.96700 * 113.99981 * 269.97665 * 4 3 2 32 32 H 1.07998 * 119.97462 * 180.02562 * 5 3 2 33 33 H 1.08004 * 119.94459 * 179.97438 * 6 5 3 34 34 H 1.09006 * 109.47355 * 134.62289 * 8 7 6 35 35 H 1.08997 * 109.47315 * 14.61687 * 8 7 6 36 36 H 1.08994 * 109.47304 * 191.52363 * 10 9 8 37 37 H 1.09008 * 109.46451 * 311.52065 * 10 9 8 38 38 H 0.96997 * 120.00161 * 180.02562 * 14 13 11 39 39 H 1.09004 * 109.46611 * 70.00031 * 19 9 8 40 40 H 1.08995 * 109.47362 * 310.00353 * 19 9 8 41 41 H 1.07998 * 120.78624 * 359.97239 * 21 20 19 42 42 H 1.08005 * 120.42268 * 179.73278 * 22 21 20 43 43 H 1.07999 * 119.61604 * 180.02562 * 23 22 21 44 44 H 1.07991 * 119.62013 * 179.97438 * 25 24 23 45 45 H 0.96699 * 114.00195 * 270.23076 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2014 1.2002 0.0000 4 8 1.5235 2.3780 0.0006 5 6 3.5889 1.1976 -0.0005 6 6 4.2787 0.0001 -0.0016 7 6 3.5892 -1.1970 -0.0016 8 6 4.3446 -2.5010 -0.0022 9 7 4.2717 -3.1085 -1.3377 10 6 4.5975 -4.5400 -1.2835 11 6 3.4705 -5.2868 -0.6178 12 1 2.5821 -4.7577 -0.3058 13 6 3.5736 -6.6454 -0.4070 14 7 4.6040 -7.3086 -0.8843 15 14 2.2495 -7.5441 0.5567 16 1 1.1462 -6.6034 0.8775 17 1 1.7210 -8.6677 -0.2579 18 1 2.8288 -8.0758 1.8165 19 6 5.1469 -2.4049 -2.2847 20 6 4.8664 -2.8897 -3.6836 21 6 5.5590 -3.9728 -4.2036 22 6 5.2714 -4.3806 -5.4969 23 6 4.3069 -3.7023 -6.2182 24 7 3.6640 -2.6797 -5.6895 25 6 3.9116 -2.2643 -4.4625 26 6 2.2013 -1.1998 -0.0059 27 8 1.5235 -2.3776 -0.0122 28 1 -0.3634 -0.0841 -1.0242 29 1 -0.3633 -0.8450 0.5850 30 1 -0.3634 0.9290 0.4393 31 1 1.3273 2.7193 -0.8826 32 1 4.1302 2.1321 -0.0001 33 1 5.3588 0.0001 -0.0024 34 1 3.9024 -3.1775 0.7293 35 1 5.3873 -2.3171 0.2568 36 1 4.7370 -4.9194 -2.2957 37 1 5.5150 -4.6823 -0.7124 38 1 4.6764 -8.2645 -0.7363 39 1 6.1887 -2.6040 -2.0332 40 1 4.9577 -1.3330 -2.2268 41 1 6.3079 -4.4835 -3.6164 42 1 5.7944 -5.2176 -5.9355 43 1 4.0766 -4.0141 -7.2263 44 1 3.3650 -1.4227 -4.0635 45 1 1.3239 -2.7214 0.8693 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001140742694.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:57 Heat of formation + Delta-G solvation = -19.706054 kcal Electronic energy + Delta-G solvation = -28303.648453 eV Core-core repulsion = 24479.533642 eV Total energy + Delta-G solvation = -3824.114812 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.20273 -39.72440 -37.80435 -36.67217 -35.39526 -32.73503 -32.62302 -31.84428 -31.19871 -29.66311 -27.36072 -26.69443 -25.83774 -24.00496 -23.12616 -21.95567 -21.90907 -20.85544 -19.86949 -18.68781 -17.13057 -16.67109 -16.58671 -16.20533 -15.78137 -15.41955 -15.14691 -14.88875 -14.51401 -14.44538 -13.88230 -13.59606 -13.43683 -13.21666 -13.02583 -12.92030 -12.63768 -12.51853 -12.39879 -12.20831 -11.97978 -11.68259 -11.54991 -11.25304 -10.93161 -10.85190 -10.64368 -10.55846 -10.46649 -10.17412 -9.86543 -9.34824 -9.20687 -9.02710 -8.57614 -8.41534 -8.39945 -8.17929 -7.28917 -6.02989 -4.00989 1.30545 1.39928 1.55628 1.74232 3.29469 3.37918 3.41391 3.60972 4.14088 4.20532 4.43869 4.70944 4.83332 4.90440 5.00715 5.03990 5.17084 5.20449 5.33164 5.36092 5.42559 5.49737 5.56300 5.67582 5.72082 5.75143 5.78038 5.85352 5.95916 6.03837 6.14776 6.20472 6.26152 6.40450 6.45320 6.49383 6.55535 6.74735 6.75575 6.83006 7.12034 7.22744 7.25418 7.63407 7.85649 8.05107 8.09831 8.15485 8.37216 8.53162 9.09267 9.62115 11.08261 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.008349 B = 0.005238 C = 0.003746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3352.809342 B = 5344.654216 C = 7472.680460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.145 4.145 3 C 0.105 3.895 4 O -0.498 6.498 5 C -0.155 4.155 6 C -0.097 4.097 7 C -0.096 4.096 8 C 0.106 3.894 9 N -0.514 5.514 10 C 0.187 3.813 11 C -0.498 4.498 12 H 0.073 0.927 13 C 0.054 3.946 14 N -0.900 5.900 15 Si 0.893 3.107 16 H -0.271 1.271 17 H -0.287 1.287 18 H -0.286 1.286 19 C 0.094 3.906 20 C -0.109 4.109 21 C -0.057 4.057 22 C -0.174 4.174 23 C 0.086 3.914 24 N -0.493 5.493 25 C 0.115 3.885 26 C 0.152 3.848 27 O -0.468 6.468 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.386 0.614 32 H 0.124 0.876 33 H 0.124 0.876 34 H 0.096 0.904 35 H 0.029 0.971 36 H 0.039 0.961 37 H -0.012 1.012 38 H 0.259 0.741 39 H 0.032 0.968 40 H 0.072 0.928 41 H 0.132 0.868 42 H 0.129 0.871 43 H 0.148 0.852 44 H 0.148 0.852 45 H 0.384 0.616 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.400 14.514 -1.383 14.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.146 4.146 3 C 0.060 3.940 4 O -0.308 6.308 5 C -0.174 4.174 6 C -0.116 4.116 7 C -0.097 4.097 8 C -0.021 4.021 9 N -0.238 5.238 10 C 0.062 3.938 11 C -0.537 4.537 12 H 0.091 0.909 13 C -0.147 4.147 14 N -0.541 5.541 15 Si 0.721 3.279 16 H -0.196 1.196 17 H -0.213 1.213 18 H -0.213 1.213 19 C -0.035 4.035 20 C -0.111 4.111 21 C -0.083 4.083 22 C -0.194 4.194 23 C -0.072 4.072 24 N -0.202 5.202 25 C -0.042 4.042 26 C 0.106 3.894 27 O -0.277 6.277 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.241 0.759 32 H 0.142 0.858 33 H 0.142 0.858 34 H 0.114 0.886 35 H 0.047 0.953 36 H 0.057 0.943 37 H 0.006 0.994 38 H 0.068 0.932 39 H 0.050 0.950 40 H 0.090 0.910 41 H 0.150 0.850 42 H 0.147 0.853 43 H 0.165 0.835 44 H 0.165 0.835 45 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -1.383 14.785 -2.044 14.989 hybrid contribution 0.800 -1.321 1.264 1.995 sum -0.583 13.464 -0.781 13.499 Atomic orbital electron populations 1.20494 0.90546 1.02474 1.02361 1.20523 0.97163 0.92278 1.04670 1.18014 0.89550 0.84354 1.02035 1.84777 1.76683 1.36018 1.33303 1.21259 0.93260 0.98545 1.04289 1.20819 0.99666 0.91114 1.00011 1.20506 0.93476 0.95855 0.99888 1.20806 0.96179 0.91802 0.93330 1.62120 1.51320 1.05267 1.05099 1.19905 0.95411 0.80697 0.97787 1.21273 1.02962 0.92248 1.37211 0.90925 1.24974 0.95881 0.97581 0.96257 1.69964 1.30186 1.08217 1.45698 0.86518 0.81950 0.79693 0.79694 1.19595 1.21316 1.21255 1.20954 0.94977 0.98280 0.89274 1.20739 0.97084 0.96575 0.96745 1.21549 0.98170 0.94076 0.94516 1.22042 1.00300 1.01389 0.95650 1.22588 0.92848 0.91998 0.99717 1.67627 1.25438 1.13927 1.13181 1.22459 0.93941 0.98646 0.89203 1.17940 0.89053 0.84850 0.97588 1.84988 1.75644 1.34754 1.32326 0.91390 0.91483 0.91500 0.75916 0.85810 0.85769 0.88628 0.95279 0.94292 0.99389 0.93166 0.95004 0.91007 0.84999 0.85294 0.83494 0.83493 0.75998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.23 9.56 36.00 0.34 -0.88 16 2 C -0.15 -2.02 5.91 -104.33 -0.62 -2.63 16 3 C 0.11 1.35 6.67 -39.24 -0.26 1.08 16 4 O -0.50 -5.45 12.47 -19.41 -0.24 -5.69 16 5 C -0.15 -1.89 9.98 -39.41 -0.39 -2.29 16 6 C -0.10 -1.28 8.97 -39.63 -0.36 -1.63 16 7 C -0.10 -1.48 4.78 -104.45 -0.50 -1.98 16 8 C 0.11 1.89 4.56 -4.97 -0.02 1.87 16 9 N -0.51 -10.31 4.37 -238.96 -1.04 -11.35 16 10 C 0.19 4.56 4.57 -4.97 -0.02 4.53 16 11 C -0.50 -13.32 8.31 -34.44 -0.29 -13.61 16 12 H 0.07 1.93 7.31 -52.48 -0.38 1.55 16 13 C 0.05 1.48 5.45 -17.82 -0.10 1.38 16 14 N -0.90 -25.98 13.30 55.43 0.74 -25.25 16 15 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 16 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 17 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 18 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 19 C 0.09 1.62 4.97 -4.98 -0.02 1.59 16 20 C -0.11 -1.94 4.95 -104.48 -0.52 -2.45 16 21 C -0.06 -0.99 8.01 -39.28 -0.31 -1.30 16 22 C -0.17 -2.73 10.11 -39.44 -0.40 -3.13 16 23 C 0.09 1.34 11.18 -17.54 -0.20 1.15 16 24 N -0.49 -8.69 10.36 -13.25 -0.14 -8.83 16 25 C 0.11 2.01 10.86 -17.55 -0.19 1.82 16 26 C 0.15 2.37 6.65 -39.23 -0.26 2.10 16 27 O -0.47 -7.84 11.56 -19.41 -0.22 -8.06 16 28 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 29 H 0.07 0.78 7.69 -51.93 -0.40 0.38 16 30 H 0.07 0.73 7.39 -51.93 -0.38 0.35 16 31 H 0.39 2.52 9.06 45.56 0.41 2.94 16 32 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 33 H 0.12 1.41 7.99 -52.48 -0.42 0.99 16 34 H 0.10 1.86 6.94 -51.93 -0.36 1.50 16 35 H 0.03 0.48 7.82 -51.93 -0.41 0.08 16 36 H 0.04 1.02 5.16 -51.93 -0.27 0.75 16 37 H -0.01 -0.31 8.06 -51.92 -0.42 -0.72 16 38 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 39 H 0.03 0.54 8.08 -51.93 -0.42 0.12 16 40 H 0.07 1.11 6.77 -51.93 -0.35 0.76 16 41 H 0.13 2.30 7.75 -52.49 -0.41 1.89 16 42 H 0.13 1.68 8.06 -52.48 -0.42 1.26 16 43 H 0.15 1.82 8.06 -52.49 -0.42 1.39 16 44 H 0.15 2.39 8.06 -52.49 -0.42 1.97 16 45 H 0.38 5.04 9.06 45.56 0.41 5.45 16 LS Contribution 376.20 15.07 5.67 5.67 Total: -1.00 -32.72 376.20 -9.02 -41.73 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: -4.64 Total: 9.97 kcal Atomic # 6 Polarization: -10.27 SS G_CDS: -4.11 Total: -14.39 kcal Atomic # 7 Polarization: -44.98 SS G_CDS: -0.45 Total: -45.43 kcal Atomic # 8 Polarization: -13.28 SS G_CDS: -0.47 Total: -13.75 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.72 -9.02 -41.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140742694.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.027 kcal (2) G-P(sol) polarization free energy of solvation -32.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds