Wall clock time and date at job start Tue Mar 31 2020 15:09:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38664 * 120.05316 * 2 1 4 4 O 1.35894 * 120.02542 * 0.02860 * 3 2 1 5 5 C 1.38749 * 119.94390 * 180.02562 * 3 2 1 6 6 C 1.38200 * 120.05492 * 0.02562 * 5 3 2 7 7 C 1.38146 * 120.11161 * 359.97438 * 6 5 3 8 8 C 1.50703 * 119.97394 * 180.02562 * 7 6 5 9 9 N 1.46903 * 109.46966 * 254.62184 * 8 7 6 10 10 C 1.46906 * 111.00152 * 198.47203 * 9 8 7 11 11 C 1.50699 * 109.47226 * 71.51564 * 10 9 8 12 12 H 1.08004 * 119.99824 * 2.48044 * 11 10 9 13 13 C 1.37877 * 119.99896 * 182.47846 * 11 10 9 14 14 N 1.31509 * 120.00050 * 354.37333 * 13 11 10 15 15 Si 1.86802 * 119.99733 * 174.37548 * 13 11 10 16 16 H 1.48500 * 109.47133 * 5.00934 * 15 13 11 17 17 H 1.48508 * 109.46758 * 125.00755 * 15 13 11 18 18 H 1.48499 * 109.47171 * 245.00571 * 15 13 11 19 19 C 1.46895 * 111.00245 * 74.51247 * 9 8 7 20 20 C 1.50694 * 109.47325 * 189.99763 * 19 9 8 21 21 C 1.38676 * 120.42167 * 270.25418 * 20 19 9 22 22 C 1.38625 * 118.41957 * 180.24438 * 21 20 19 23 23 C 1.38230 * 119.16327 * 359.75230 * 22 21 20 24 24 N 1.31855 * 120.76342 * 359.97438 * 23 22 21 25 25 C 1.31888 * 121.72554 * 0.02562 * 24 23 22 26 26 C 1.38620 * 120.05743 * 180.28241 * 2 1 3 27 27 O 1.35895 * 120.02760 * 0.02562 * 26 2 1 28 28 H 1.08998 * 109.47627 * 94.69700 * 1 2 3 29 29 H 1.09003 * 109.46613 * 214.69355 * 1 2 3 30 30 H 1.08999 * 109.47266 * 334.69251 * 1 2 3 31 31 H 0.96700 * 113.99981 * 269.97665 * 4 3 2 32 32 H 1.07998 * 119.97462 * 180.02562 * 5 3 2 33 33 H 1.08004 * 119.94459 * 179.97438 * 6 5 3 34 34 H 1.09006 * 109.47355 * 134.62289 * 8 7 6 35 35 H 1.08997 * 109.47315 * 14.61687 * 8 7 6 36 36 H 1.08994 * 109.47304 * 191.52363 * 10 9 8 37 37 H 1.09008 * 109.46451 * 311.52065 * 10 9 8 38 38 H 0.96997 * 120.00161 * 180.02562 * 14 13 11 39 39 H 1.09004 * 109.46611 * 70.00031 * 19 9 8 40 40 H 1.08995 * 109.47362 * 310.00353 * 19 9 8 41 41 H 1.07998 * 120.78624 * 359.97239 * 21 20 19 42 42 H 1.08005 * 120.42268 * 179.73278 * 22 21 20 43 43 H 1.07999 * 119.61604 * 180.02562 * 23 22 21 44 44 H 1.07991 * 119.62013 * 179.97438 * 25 24 23 45 45 H 0.96699 * 114.00195 * 270.23076 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2014 1.2002 0.0000 4 8 1.5235 2.3780 0.0006 5 6 3.5889 1.1976 -0.0005 6 6 4.2787 0.0001 -0.0016 7 6 3.5892 -1.1970 -0.0016 8 6 4.3446 -2.5010 -0.0022 9 7 4.2717 -3.1085 -1.3377 10 6 4.5975 -4.5400 -1.2835 11 6 3.4705 -5.2868 -0.6178 12 1 2.5821 -4.7577 -0.3058 13 6 3.5736 -6.6454 -0.4070 14 7 4.6040 -7.3086 -0.8843 15 14 2.2495 -7.5441 0.5567 16 1 1.1462 -6.6034 0.8775 17 1 1.7210 -8.6677 -0.2579 18 1 2.8288 -8.0758 1.8165 19 6 5.1469 -2.4049 -2.2847 20 6 4.8664 -2.8897 -3.6836 21 6 5.5590 -3.9728 -4.2036 22 6 5.2714 -4.3806 -5.4969 23 6 4.3069 -3.7023 -6.2182 24 7 3.6640 -2.6797 -5.6895 25 6 3.9116 -2.2643 -4.4625 26 6 2.2013 -1.1998 -0.0059 27 8 1.5235 -2.3776 -0.0122 28 1 -0.3634 -0.0841 -1.0242 29 1 -0.3633 -0.8450 0.5850 30 1 -0.3634 0.9290 0.4393 31 1 1.3273 2.7193 -0.8826 32 1 4.1302 2.1321 -0.0001 33 1 5.3588 0.0001 -0.0024 34 1 3.9024 -3.1775 0.7293 35 1 5.3873 -2.3171 0.2568 36 1 4.7370 -4.9194 -2.2957 37 1 5.5150 -4.6823 -0.7124 38 1 4.6764 -8.2645 -0.7363 39 1 6.1887 -2.6040 -2.0332 40 1 4.9577 -1.3330 -2.2268 41 1 6.3079 -4.4835 -3.6164 42 1 5.7944 -5.2176 -5.9355 43 1 4.0766 -4.0141 -7.2263 44 1 3.3650 -1.4227 -4.0635 45 1 1.3239 -2.7214 0.8693 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001140742694.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:56 Heat of formation + Delta-G solvation = -43.423007 kcal Electronic energy + Delta-G solvation = -28304.676898 eV Core-core repulsion = 24479.533642 eV Total energy + Delta-G solvation = -3825.143256 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.33541 -40.97690 -38.90404 -38.08660 -36.51139 -34.71485 -33.82334 -33.07165 -32.50844 -30.95775 -29.10907 -27.74511 -27.14063 -25.65752 -24.44284 -23.50720 -23.01609 -22.04945 -21.30182 -19.71605 -18.48561 -18.18684 -17.94933 -17.41826 -17.18977 -16.70555 -16.65362 -16.16486 -15.93670 -15.72436 -15.19486 -15.03912 -14.80498 -14.35474 -14.20067 -14.07207 -13.96695 -13.91703 -13.71781 -13.56538 -13.33562 -13.17730 -12.80727 -12.72923 -12.53157 -12.42501 -12.21343 -12.07811 -11.77322 -11.47211 -11.27295 -11.24554 -10.67919 -10.45481 -10.37796 -9.87899 -9.45347 -9.28895 -8.91039 -8.13422 -6.17893 0.20288 0.30788 0.36306 0.40774 1.40040 1.42501 1.54247 2.43569 2.56803 2.89821 3.18867 3.20081 3.55959 3.61425 3.68602 3.86890 3.90447 3.95304 4.02159 4.11628 4.16054 4.19035 4.42503 4.50722 4.55550 4.62030 4.73533 4.78967 4.81907 4.84180 4.89785 4.92034 5.05116 5.20505 5.25086 5.29676 5.33777 5.42101 5.43656 5.49210 5.68261 5.78845 5.84437 5.84539 6.17302 6.41063 6.68300 6.88250 6.99097 7.01135 7.06766 7.49489 8.97449 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.008349 B = 0.005238 C = 0.003746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3352.809342 B = 5344.654216 C = 7472.680460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.156 4.156 3 C 0.113 3.887 4 O -0.501 6.501 5 C -0.150 4.150 6 C -0.092 4.092 7 C -0.113 4.113 8 C 0.112 3.888 9 N -0.520 5.520 10 C 0.203 3.797 11 C -0.505 4.505 12 H 0.070 0.930 13 C 0.002 3.998 14 N -0.935 5.935 15 Si 0.956 3.044 16 H -0.261 1.261 17 H -0.289 1.289 18 H -0.280 1.280 19 C 0.099 3.901 20 C -0.124 4.124 21 C -0.075 4.075 22 C -0.174 4.174 23 C 0.085 3.915 24 N -0.509 5.509 25 C 0.106 3.894 26 C 0.135 3.865 27 O -0.491 6.491 28 H 0.067 0.933 29 H 0.064 0.936 30 H 0.078 0.922 31 H 0.408 0.592 32 H 0.151 0.849 33 H 0.142 0.858 34 H 0.070 0.930 35 H 0.037 0.963 36 H 0.020 0.980 37 H -0.040 1.040 38 H 0.259 0.741 39 H 0.033 0.967 40 H 0.093 0.907 41 H 0.123 0.877 42 H 0.155 0.845 43 H 0.183 0.817 44 H 0.156 0.844 45 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.137 16.351 -1.704 16.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.157 4.157 3 C 0.068 3.932 4 O -0.313 6.313 5 C -0.169 4.169 6 C -0.111 4.111 7 C -0.115 4.115 8 C -0.015 4.015 9 N -0.243 5.243 10 C 0.077 3.923 11 C -0.544 4.544 12 H 0.088 0.912 13 C -0.195 4.195 14 N -0.576 5.576 15 Si 0.782 3.218 16 H -0.185 1.185 17 H -0.215 1.215 18 H -0.206 1.206 19 C -0.029 4.029 20 C -0.126 4.126 21 C -0.102 4.102 22 C -0.193 4.193 23 C -0.072 4.072 24 N -0.218 5.218 25 C -0.051 4.051 26 C 0.089 3.911 27 O -0.302 6.302 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.097 0.903 31 H 0.266 0.734 32 H 0.169 0.831 33 H 0.160 0.840 34 H 0.088 0.912 35 H 0.055 0.945 36 H 0.038 0.962 37 H -0.022 1.022 38 H 0.068 0.932 39 H 0.051 0.949 40 H 0.111 0.889 41 H 0.141 0.859 42 H 0.173 0.827 43 H 0.200 0.800 44 H 0.173 0.827 45 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -2.131 16.662 -2.365 16.963 hybrid contribution 1.032 -1.788 1.318 2.449 sum -1.099 14.874 -1.047 14.951 Atomic orbital electron populations 1.20483 0.89533 1.03016 1.02418 1.20688 0.98065 0.92118 1.04863 1.18103 0.89926 0.84564 1.00575 1.84723 1.76406 1.34971 1.35246 1.21517 0.93161 0.99150 1.03046 1.20987 1.00586 0.90520 0.98959 1.20305 0.93418 0.95323 1.02405 1.20681 0.96805 0.92556 0.91455 1.62017 1.52148 1.03257 1.06912 1.19526 0.93463 0.83548 0.95737 1.21572 1.03334 0.92638 1.36815 0.91183 1.25766 0.97988 0.98524 0.97222 1.70082 1.32035 1.08423 1.47100 0.85531 0.79641 0.78334 0.78304 1.18460 1.21535 1.20631 1.20966 0.94487 0.98983 0.88499 1.20823 0.97699 0.97105 0.96982 1.21674 0.98504 0.94428 0.95583 1.22365 1.00207 1.01853 0.94878 1.23181 0.91976 0.91036 1.01029 1.67671 1.26051 1.14835 1.13239 1.22604 0.93978 0.99051 0.89428 1.18126 0.89257 0.85013 0.98671 1.84937 1.75971 1.35760 1.33535 0.91406 0.91668 0.90317 0.73358 0.83148 0.83995 0.91169 0.94524 0.96204 1.02232 0.93189 0.94880 0.88923 0.85949 0.82691 0.80009 0.82689 0.74963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.22 9.56 71.23 0.68 -1.54 16 2 C -0.16 -4.12 5.91 -19.67 -0.12 -4.23 16 3 C 0.11 2.60 6.67 22.49 0.15 2.75 16 4 O -0.50 -9.27 12.47 -92.36 -1.15 -10.43 16 5 C -0.15 -3.21 9.98 22.38 0.22 -2.99 16 6 C -0.09 -2.22 8.97 22.24 0.20 -2.02 16 7 C -0.11 -3.44 4.78 -19.75 -0.09 -3.53 16 8 C 0.11 4.07 4.56 85.56 0.39 4.46 16 9 N -0.52 -21.32 4.37 -909.94 -3.98 -25.30 16 10 C 0.20 10.32 4.57 85.56 0.39 10.71 16 11 C -0.51 -27.75 8.31 25.60 0.21 -27.54 16 12 H 0.07 3.82 7.31 -2.91 -0.02 3.80 16 13 C 0.00 0.12 5.45 84.66 0.46 0.59 16 14 N -0.93 -55.29 13.30 21.45 0.29 -55.01 16 15 Si 0.96 44.11 29.54 68.60 2.03 46.13 16 16 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 17 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 18 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 19 C 0.10 3.43 4.97 85.56 0.43 3.85 16 20 C -0.12 -4.42 4.95 -19.77 -0.10 -4.52 16 21 C -0.08 -2.67 8.01 22.47 0.18 -2.49 16 22 C -0.17 -5.28 10.11 22.36 0.23 -5.06 16 23 C 0.08 2.51 11.18 84.69 0.95 3.46 16 24 N -0.51 -17.38 10.36 -195.84 -2.03 -19.41 16 25 C 0.11 3.67 10.86 84.67 0.92 4.59 16 26 C 0.13 4.16 6.65 22.49 0.15 4.31 16 27 O -0.49 -16.75 11.56 -92.37 -1.07 -17.82 16 28 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.06 1.48 7.69 -2.39 -0.02 1.46 16 30 H 0.08 1.56 7.39 -2.39 -0.02 1.54 16 31 H 0.41 3.87 9.06 -74.06 -0.67 3.20 16 32 H 0.15 2.42 8.06 -2.91 -0.02 2.40 16 33 H 0.14 2.87 7.99 -2.91 -0.02 2.85 16 34 H 0.07 2.85 6.94 -2.38 -0.02 2.84 16 35 H 0.04 1.24 7.82 -2.39 -0.02 1.22 16 36 H 0.02 1.09 5.16 -2.39 -0.01 1.07 16 37 H -0.04 -2.21 8.06 -2.38 -0.02 -2.23 16 38 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 39 H 0.03 1.13 8.08 -2.38 -0.02 1.11 16 40 H 0.09 2.79 6.77 -2.39 -0.02 2.77 16 41 H 0.12 4.47 7.75 -2.91 -0.02 4.45 16 42 H 0.16 3.79 8.06 -2.91 -0.02 3.77 16 43 H 0.18 3.97 8.06 -2.91 -0.02 3.95 16 44 H 0.16 4.95 8.06 -2.92 -0.02 4.92 16 45 H 0.39 10.74 9.06 -74.06 -0.67 10.07 16 Total: -1.00 -70.86 376.20 -0.98 -71.83 By element: Atomic # 1 Polarization: 29.51 SS G_CDS: -0.31 Total: 29.20 kcal Atomic # 6 Polarization: -24.45 SS G_CDS: 5.25 Total: -19.20 kcal Atomic # 7 Polarization: -94.00 SS G_CDS: -5.72 Total: -99.72 kcal Atomic # 8 Polarization: -26.03 SS G_CDS: -2.22 Total: -28.25 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.13 kcal Total: -70.86 -0.98 -71.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140742694.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.411 kcal (2) G-P(sol) polarization free energy of solvation -70.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds