Wall clock time and date at job start Tue Mar 31 2020 15:12:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31847 * 119.65961 * 2 1 4 4 C 1.31839 * 121.78273 * 180.02562 * 3 2 1 5 5 C 1.38256 * 120.88707 * 0.02562 * 4 3 2 6 6 C 1.50698 * 120.38951 * 180.02562 * 5 4 3 7 7 O 1.42898 * 109.47408 * 3.23254 * 6 5 4 8 8 C 1.38533 * 119.22039 * 359.97438 * 5 4 3 9 9 C 1.50703 * 120.81267 * 180.02562 * 8 5 4 10 10 N 1.46501 * 109.47297 * 81.47682 * 9 8 5 11 11 C 1.36942 * 119.99542 * 266.02736 * 10 9 8 12 12 H 1.08001 * 119.99560 * 121.17652 * 11 10 9 13 13 C 1.38808 * 119.99896 * 301.17049 * 11 10 9 14 14 N 1.31612 * 120.00456 * 348.43086 * 13 11 10 15 15 Si 1.86807 * 119.99535 * 168.42829 * 13 11 10 16 16 H 1.48500 * 109.47498 * 0.02562 * 15 13 11 17 17 H 1.48511 * 109.46896 * 120.00157 * 15 13 11 18 18 H 1.48499 * 109.46883 * 239.99839 * 15 13 11 19 19 C 1.46492 * 120.00055 * 86.02863 * 10 9 8 20 20 C 1.50700 * 109.47279 * 97.31009 * 19 10 9 21 21 C 1.38231 * 120.00063 * 278.10465 * 20 19 10 22 22 C 1.38233 * 119.99860 * 179.76823 * 21 20 19 23 23 C 1.38231 * 120.00186 * 0.49923 * 22 21 20 24 24 C 1.38237 * 119.99978 * 359.75223 * 23 22 21 25 25 C 1.38234 * 119.99848 * 359.97438 * 24 23 22 26 26 C 1.38711 * 119.65944 * 180.30113 * 2 1 3 27 27 O 1.35902 * 120.47421 * 0.02562 * 26 2 1 28 28 H 1.08996 * 109.46871 * 89.99667 * 1 2 3 29 29 H 1.08997 * 109.46807 * 210.00372 * 1 2 3 30 30 H 1.09004 * 109.46894 * 329.99915 * 1 2 3 31 31 H 1.08006 * 119.55745 * 180.02562 * 4 3 2 32 32 H 1.08998 * 109.47519 * 123.23715 * 6 5 4 33 33 H 1.09007 * 109.46553 * 243.24023 * 6 5 4 34 34 H 0.96702 * 114.00187 * 179.97438 * 7 6 5 35 35 H 1.08997 * 109.46932 * 321.47356 * 9 8 5 36 36 H 1.09000 * 109.46883 * 201.47733 * 9 8 5 37 37 H 0.97002 * 120.00071 * 185.01560 * 14 13 11 38 38 H 1.09005 * 109.46952 * 217.31190 * 19 10 9 39 39 H 1.08995 * 109.47466 * 337.30992 * 19 10 9 40 40 H 1.08000 * 119.99934 * 359.97438 * 21 20 19 41 41 H 1.08004 * 119.99891 * 180.23175 * 22 21 20 42 42 H 1.08006 * 120.00170 * 179.72405 * 23 22 21 43 43 H 1.07999 * 120.00119 * 179.97438 * 24 23 22 44 44 H 1.08000 * 120.00248 * 179.97438 * 25 24 23 45 45 H 0.96699 * 114.00308 * 277.54254 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1595 1.1457 0.0000 4 6 3.4770 1.1946 -0.0005 5 6 4.2302 0.0352 -0.0016 6 6 5.7356 0.1041 -0.0016 7 8 6.1500 1.4695 0.0756 8 6 3.5847 -1.1906 -0.0016 9 6 4.3703 -2.4767 -0.0022 10 7 4.8001 -2.7870 1.3635 11 6 6.0363 -2.3903 1.7990 12 1 6.1236 -1.7419 2.6583 13 6 7.1771 -2.8217 1.1362 14 7 7.0942 -3.7828 0.2409 15 14 8.8299 -2.0378 1.5148 16 1 8.6546 -0.9891 2.5514 17 1 9.7670 -3.0758 2.0149 18 1 9.3822 -1.4262 0.2795 19 6 3.9075 -3.5217 2.2632 20 6 4.2753 -4.9831 2.2528 21 6 3.8146 -5.8046 1.2409 22 6 4.1560 -7.1440 1.2288 23 6 4.9495 -7.6643 2.2340 24 6 5.4059 -6.8439 3.2487 25 6 5.0692 -5.5032 3.2578 26 6 2.1934 -1.2054 -0.0063 27 8 1.5167 -2.3839 -0.0131 28 1 -0.3633 0.0001 -1.0276 29 1 -0.3633 -0.8899 0.5139 30 1 -0.3633 0.8900 0.5139 31 1 3.9746 2.1532 -0.0001 32 1 6.1244 -0.4427 0.8574 33 1 6.1196 -0.3407 -0.9197 34 1 7.1095 1.5897 0.0804 35 1 5.2455 -2.3675 -0.6426 36 1 3.7434 -3.2851 -0.3784 37 1 7.8999 -4.1344 -0.1693 38 1 4.0078 -3.1290 3.2751 39 1 2.8769 -3.4041 1.9285 40 1 3.1907 -5.3991 0.4581 41 1 3.7991 -7.7851 0.4362 42 1 5.2126 -8.7118 2.2269 43 1 6.0256 -7.2504 4.0343 44 1 5.4255 -4.8623 4.0508 45 1 1.2199 -2.6720 0.8610 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001140869575.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:12:08 Heat of formation + Delta-G solvation = -18.095873 kcal Electronic energy + Delta-G solvation = -28954.981858 eV Core-core repulsion = 25130.936869 eV Total energy + Delta-G solvation = -3824.044989 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.26765 -38.46156 -37.09169 -36.35636 -35.59598 -32.99071 -32.03440 -31.07246 -30.13675 -29.80075 -28.28310 -26.15121 -25.68049 -24.53460 -22.61235 -21.82349 -21.66029 -20.50823 -19.74240 -17.78474 -17.42445 -16.84698 -16.11282 -15.73207 -15.41408 -14.97780 -14.94715 -14.45024 -14.31306 -14.27553 -13.79624 -13.66338 -13.41882 -13.30304 -12.87313 -12.67450 -12.31287 -12.23009 -12.03836 -11.83095 -11.75936 -11.63677 -11.37832 -11.06060 -10.94085 -10.92432 -10.81508 -10.49430 -10.27064 -10.15738 -10.04293 -9.78346 -8.86747 -8.78157 -8.58842 -8.14288 -8.05652 -7.92365 -6.51259 -6.02050 -3.86226 1.49844 1.73914 2.17880 2.19403 3.11586 3.24515 3.25353 4.04395 4.21649 4.43407 4.56666 4.69564 4.83989 5.05255 5.15693 5.50849 5.55876 5.57143 5.57797 5.61744 5.71527 5.76038 5.79254 5.84082 5.90075 5.98445 6.09238 6.17900 6.25875 6.28158 6.34262 6.38729 6.50750 6.63082 6.70974 6.78549 6.82526 7.03490 7.06043 7.15059 7.19583 7.23449 7.53169 7.61673 7.80162 7.90625 8.01680 8.44835 8.45501 8.97082 9.42292 10.20752 10.93165 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.010212 B = 0.005898 C = 0.004013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2741.245077 B = 4746.149430 C = 6976.319828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.082 3.918 3 N -0.485 5.485 4 C 0.100 3.900 5 C -0.105 4.105 6 C 0.100 3.900 7 O -0.582 6.582 8 C -0.056 4.056 9 C 0.194 3.806 10 N -0.559 5.559 11 C -0.285 4.285 12 H 0.055 0.945 13 C 0.047 3.953 14 N -0.857 5.857 15 Si 0.877 3.123 16 H -0.269 1.269 17 H -0.283 1.283 18 H -0.283 1.283 19 C 0.181 3.819 20 C -0.059 4.059 21 C -0.103 4.103 22 C -0.125 4.125 23 C -0.141 4.141 24 C -0.127 4.127 25 C -0.100 4.100 26 C 0.051 3.949 27 O -0.485 6.485 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.159 0.841 32 H 0.114 0.886 33 H 0.053 0.947 34 H 0.378 0.622 35 H 0.079 0.921 36 H 0.050 0.950 37 H 0.260 0.740 38 H 0.047 0.953 39 H 0.040 0.960 40 H 0.109 0.891 41 H 0.106 0.894 42 H 0.105 0.895 43 H 0.106 0.894 44 H 0.111 0.889 45 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.393 0.457 1.438 6.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.056 4.056 3 N -0.196 5.196 4 C -0.057 4.057 5 C -0.107 4.107 6 C 0.023 3.977 7 O -0.388 6.388 8 C -0.067 4.067 9 C 0.068 3.932 10 N -0.278 5.278 11 C -0.415 4.415 12 H 0.073 0.927 13 C -0.160 4.160 14 N -0.492 5.492 15 Si 0.704 3.296 16 H -0.193 1.193 17 H -0.209 1.209 18 H -0.209 1.209 19 C 0.056 3.944 20 C -0.062 4.062 21 C -0.121 4.121 22 C -0.144 4.144 23 C -0.159 4.159 24 C -0.145 4.145 25 C -0.119 4.119 26 C 0.004 3.996 27 O -0.293 6.293 28 H 0.090 0.910 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.176 0.824 32 H 0.132 0.868 33 H 0.071 0.929 34 H 0.225 0.775 35 H 0.097 0.903 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.065 0.935 39 H 0.058 0.942 40 H 0.127 0.873 41 H 0.124 0.876 42 H 0.123 0.877 43 H 0.124 0.876 44 H 0.129 0.871 45 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -7.300 1.263 0.665 7.438 hybrid contribution 2.286 -0.819 0.468 2.473 sum -5.013 0.444 1.133 5.159 Atomic orbital electron populations 1.20495 0.89321 1.02488 1.02552 1.21562 0.96929 0.88333 0.98792 1.67481 1.10103 1.28156 1.13871 1.22484 0.88450 0.98721 0.96002 1.20494 0.96363 0.92986 1.00904 1.21528 0.90498 0.82155 1.03535 1.86268 1.27466 1.27202 1.97828 1.21787 0.93099 0.98606 0.93191 1.19754 0.96053 0.88433 0.88972 1.43465 1.14696 1.60503 1.09169 1.18757 0.81953 1.26306 1.14470 0.92716 1.25793 0.98229 0.94871 0.97067 1.69950 1.28184 1.23987 1.27127 0.86675 0.84709 0.79804 0.78426 1.19316 1.20948 1.20872 1.20066 0.92553 0.86643 0.95171 1.20734 0.95304 0.97006 0.93124 1.20837 1.00429 0.93129 0.97735 1.20917 0.99474 0.95727 0.98236 1.20835 1.00244 0.98845 0.96000 1.20948 1.00443 0.94452 0.98681 1.20888 0.97758 0.94316 0.98927 1.19004 0.90107 0.85627 1.04870 1.84815 1.74290 1.36415 1.33826 0.90984 0.91253 0.91152 0.82428 0.86827 0.92927 0.77530 0.90257 0.93131 0.93022 0.93484 0.94199 0.87281 0.87563 0.87674 0.87583 0.87089 0.76383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.17 9.95 36.01 0.36 -0.81 16 2 C 0.08 1.39 6.80 -82.41 -0.56 0.83 16 3 N -0.48 -8.86 10.27 -9.35 -0.10 -8.95 16 4 C 0.10 1.85 10.54 -17.54 -0.18 1.67 16 5 C -0.10 -2.02 5.89 -104.51 -0.62 -2.64 16 6 C 0.10 1.87 6.25 36.00 0.22 2.09 16 7 O -0.58 -9.55 12.17 -35.23 -0.43 -9.97 16 8 C -0.06 -1.08 5.51 -104.18 -0.57 -1.65 16 9 C 0.19 4.05 4.84 -5.19 -0.03 4.03 16 10 N -0.56 -11.96 2.22 -175.99 -0.39 -12.35 16 11 C -0.28 -6.65 6.39 -15.06 -0.10 -6.75 16 12 H 0.06 1.34 7.86 -52.49 -0.41 0.93 16 13 C 0.05 1.12 4.82 -17.44 -0.08 1.04 16 14 N -0.86 -21.89 12.60 55.49 0.70 -21.20 16 15 Si 0.88 18.83 29.26 -169.99 -4.97 13.86 16 16 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 17 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 18 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 19 C 0.18 3.46 5.83 -5.20 -0.03 3.43 16 20 C -0.06 -1.14 5.40 -104.62 -0.56 -1.71 16 21 C -0.10 -1.92 9.73 -39.59 -0.39 -2.30 16 22 C -0.13 -2.18 10.05 -39.59 -0.40 -2.58 16 23 C -0.14 -2.38 10.05 -39.58 -0.40 -2.78 16 24 C -0.13 -2.23 10.05 -39.58 -0.40 -2.63 16 25 C -0.10 -1.91 9.67 -39.58 -0.38 -2.29 16 26 C 0.05 0.90 6.68 -39.07 -0.26 0.64 16 27 O -0.49 -7.41 11.34 -19.43 -0.22 -7.63 16 28 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.07 0.76 7.53 -51.93 -0.39 0.37 16 30 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.16 2.75 7.02 -52.48 -0.37 2.38 16 32 H 0.11 2.36 4.33 -51.93 -0.22 2.13 16 33 H 0.05 1.00 7.78 -51.93 -0.40 0.60 16 34 H 0.38 4.63 9.12 45.56 0.42 5.05 16 35 H 0.08 1.86 6.04 -51.93 -0.31 1.54 16 36 H 0.05 1.07 7.12 -51.93 -0.37 0.70 16 37 H 0.26 6.55 8.32 -40.82 -0.34 6.21 16 38 H 0.05 0.90 7.98 -51.93 -0.41 0.48 16 39 H 0.04 0.67 6.69 -51.93 -0.35 0.33 16 40 H 0.11 1.97 7.83 -52.49 -0.41 1.55 16 41 H 0.11 1.60 8.06 -52.48 -0.42 1.18 16 42 H 0.11 1.50 8.06 -52.48 -0.42 1.08 16 43 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 44 H 0.11 2.05 8.05 -52.49 -0.42 1.63 16 45 H 0.38 4.41 8.05 45.56 0.37 4.78 16 LS Contribution 371.79 15.07 5.60 5.60 Total: -1.00 -28.14 371.79 -8.73 -36.86 By element: Atomic # 1 Polarization: 20.75 SS G_CDS: -4.55 Total: 16.20 kcal Atomic # 6 Polarization: -8.04 SS G_CDS: -4.37 Total: -12.42 kcal Atomic # 7 Polarization: -42.71 SS G_CDS: 0.21 Total: -42.50 kcal Atomic # 8 Polarization: -16.96 SS G_CDS: -0.65 Total: -17.61 kcal Atomic # 14 Polarization: 18.83 SS G_CDS: -4.97 Total: 13.86 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -28.14 -8.73 -36.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140869575.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.767 kcal (2) G-P(sol) polarization free energy of solvation -28.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds