Wall clock time and date at job start Tue Mar 31 2020 15:12:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31847 * 119.65961 * 2 1 4 4 C 1.31839 * 121.78273 * 180.02562 * 3 2 1 5 5 C 1.38256 * 120.88707 * 0.02562 * 4 3 2 6 6 C 1.50698 * 120.38951 * 180.02562 * 5 4 3 7 7 O 1.42898 * 109.47408 * 3.23254 * 6 5 4 8 8 C 1.38533 * 119.22039 * 359.97438 * 5 4 3 9 9 C 1.50703 * 120.81267 * 180.02562 * 8 5 4 10 10 N 1.46501 * 109.47297 * 81.47682 * 9 8 5 11 11 C 1.36942 * 119.99542 * 266.02736 * 10 9 8 12 12 H 1.08001 * 119.99560 * 121.17652 * 11 10 9 13 13 C 1.38808 * 119.99896 * 301.17049 * 11 10 9 14 14 N 1.31612 * 120.00456 * 348.43086 * 13 11 10 15 15 Si 1.86807 * 119.99535 * 168.42829 * 13 11 10 16 16 H 1.48500 * 109.47498 * 0.02562 * 15 13 11 17 17 H 1.48511 * 109.46896 * 120.00157 * 15 13 11 18 18 H 1.48499 * 109.46883 * 239.99839 * 15 13 11 19 19 C 1.46492 * 120.00055 * 86.02863 * 10 9 8 20 20 C 1.50700 * 109.47279 * 97.31009 * 19 10 9 21 21 C 1.38231 * 120.00063 * 278.10465 * 20 19 10 22 22 C 1.38233 * 119.99860 * 179.76823 * 21 20 19 23 23 C 1.38231 * 120.00186 * 0.49923 * 22 21 20 24 24 C 1.38237 * 119.99978 * 359.75223 * 23 22 21 25 25 C 1.38234 * 119.99848 * 359.97438 * 24 23 22 26 26 C 1.38711 * 119.65944 * 180.30113 * 2 1 3 27 27 O 1.35902 * 120.47421 * 0.02562 * 26 2 1 28 28 H 1.08996 * 109.46871 * 89.99667 * 1 2 3 29 29 H 1.08997 * 109.46807 * 210.00372 * 1 2 3 30 30 H 1.09004 * 109.46894 * 329.99915 * 1 2 3 31 31 H 1.08006 * 119.55745 * 180.02562 * 4 3 2 32 32 H 1.08998 * 109.47519 * 123.23715 * 6 5 4 33 33 H 1.09007 * 109.46553 * 243.24023 * 6 5 4 34 34 H 0.96702 * 114.00187 * 179.97438 * 7 6 5 35 35 H 1.08997 * 109.46932 * 321.47356 * 9 8 5 36 36 H 1.09000 * 109.46883 * 201.47733 * 9 8 5 37 37 H 0.97002 * 120.00071 * 185.01560 * 14 13 11 38 38 H 1.09005 * 109.46952 * 217.31190 * 19 10 9 39 39 H 1.08995 * 109.47466 * 337.30992 * 19 10 9 40 40 H 1.08000 * 119.99934 * 359.97438 * 21 20 19 41 41 H 1.08004 * 119.99891 * 180.23175 * 22 21 20 42 42 H 1.08006 * 120.00170 * 179.72405 * 23 22 21 43 43 H 1.07999 * 120.00119 * 179.97438 * 24 23 22 44 44 H 1.08000 * 120.00248 * 179.97438 * 25 24 23 45 45 H 0.96699 * 114.00308 * 277.54254 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1595 1.1457 0.0000 4 6 3.4770 1.1946 -0.0005 5 6 4.2302 0.0352 -0.0016 6 6 5.7356 0.1041 -0.0016 7 8 6.1500 1.4695 0.0756 8 6 3.5847 -1.1906 -0.0016 9 6 4.3703 -2.4767 -0.0022 10 7 4.8001 -2.7870 1.3635 11 6 6.0363 -2.3903 1.7990 12 1 6.1236 -1.7419 2.6583 13 6 7.1771 -2.8217 1.1362 14 7 7.0942 -3.7828 0.2409 15 14 8.8299 -2.0378 1.5148 16 1 8.6546 -0.9891 2.5514 17 1 9.7670 -3.0758 2.0149 18 1 9.3822 -1.4262 0.2795 19 6 3.9075 -3.5217 2.2632 20 6 4.2753 -4.9831 2.2528 21 6 3.8146 -5.8046 1.2409 22 6 4.1560 -7.1440 1.2288 23 6 4.9495 -7.6643 2.2340 24 6 5.4059 -6.8439 3.2487 25 6 5.0692 -5.5032 3.2578 26 6 2.1934 -1.2054 -0.0063 27 8 1.5167 -2.3839 -0.0131 28 1 -0.3633 0.0001 -1.0276 29 1 -0.3633 -0.8899 0.5139 30 1 -0.3633 0.8900 0.5139 31 1 3.9746 2.1532 -0.0001 32 1 6.1244 -0.4427 0.8574 33 1 6.1196 -0.3407 -0.9197 34 1 7.1095 1.5897 0.0804 35 1 5.2455 -2.3675 -0.6426 36 1 3.7434 -3.2851 -0.3784 37 1 7.8999 -4.1344 -0.1693 38 1 4.0078 -3.1290 3.2751 39 1 2.8769 -3.4041 1.9285 40 1 3.1907 -5.3991 0.4581 41 1 3.7991 -7.7851 0.4362 42 1 5.2126 -8.7118 2.2269 43 1 6.0256 -7.2504 4.0343 44 1 5.4255 -4.8623 4.0508 45 1 1.2199 -2.6720 0.8610 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001140869575.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:12:07 Heat of formation + Delta-G solvation = -35.698660 kcal Electronic energy + Delta-G solvation = -28955.745172 eV Core-core repulsion = 25130.936869 eV Total energy + Delta-G solvation = -3824.808303 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.66192 -39.87128 -38.41427 -37.81291 -37.08833 -34.43758 -33.72595 -32.41318 -31.52460 -31.30132 -29.63903 -27.67172 -27.32600 -25.91698 -24.16744 -23.25702 -23.08901 -21.92255 -21.24993 -19.09323 -18.85688 -18.53124 -17.52315 -17.13336 -16.86147 -16.57454 -16.40538 -15.86558 -15.78950 -15.73779 -15.38846 -15.02052 -14.99279 -14.56984 -14.32932 -14.05964 -13.66296 -13.50942 -13.35471 -13.26314 -13.13828 -13.02094 -12.90903 -12.70026 -12.61853 -12.44354 -12.26354 -12.04448 -11.76917 -11.70545 -11.57693 -11.21630 -10.56520 -10.27595 -10.11088 -9.54602 -9.43612 -9.34859 -8.29388 -7.80033 -5.70656 0.12141 0.28664 0.77225 0.78831 1.37595 1.46870 1.52479 2.43221 2.68783 3.09402 3.12590 3.24862 3.41315 3.56046 3.78930 3.99964 4.05257 4.17643 4.19244 4.28119 4.38128 4.44450 4.49512 4.55729 4.63294 4.70600 4.74305 4.80184 4.83357 4.86084 4.97857 5.01850 5.08995 5.20988 5.23949 5.37238 5.41595 5.42798 5.57007 5.70162 5.75399 5.81121 5.82630 6.08785 6.41235 6.58707 6.74010 6.82776 7.07635 7.21564 7.67845 8.42588 9.08627 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.010212 B = 0.005898 C = 0.004013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2741.245077 B = 4746.149430 C = 6976.319828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.081 3.919 3 N -0.493 5.493 4 C 0.096 3.904 5 C -0.122 4.122 6 C 0.113 3.887 7 O -0.582 6.582 8 C -0.073 4.073 9 C 0.212 3.788 10 N -0.567 5.567 11 C -0.275 4.275 12 H 0.042 0.958 13 C 0.016 3.984 14 N -0.886 5.886 15 Si 0.922 3.078 16 H -0.262 1.262 17 H -0.295 1.295 18 H -0.279 1.279 19 C 0.182 3.818 20 C -0.075 4.075 21 C -0.116 4.116 22 C -0.131 4.131 23 C -0.142 4.142 24 C -0.133 4.133 25 C -0.121 4.121 26 C 0.057 3.943 27 O -0.485 6.485 28 H 0.082 0.918 29 H 0.091 0.909 30 H 0.079 0.921 31 H 0.165 0.835 32 H 0.093 0.907 33 H 0.042 0.958 34 H 0.396 0.604 35 H 0.049 0.951 36 H 0.044 0.956 37 H 0.253 0.747 38 H 0.042 0.958 39 H 0.060 0.940 40 H 0.110 0.890 41 H 0.130 0.870 42 H 0.135 0.865 43 H 0.128 0.872 44 H 0.107 0.893 45 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.702 0.183 1.702 7.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.058 4.058 3 N -0.204 5.204 4 C -0.060 4.060 5 C -0.125 4.125 6 C 0.035 3.965 7 O -0.390 6.390 8 C -0.084 4.084 9 C 0.086 3.914 10 N -0.286 5.286 11 C -0.405 4.405 12 H 0.059 0.941 13 C -0.187 4.187 14 N -0.524 5.524 15 Si 0.749 3.251 16 H -0.186 1.186 17 H -0.222 1.222 18 H -0.205 1.205 19 C 0.057 3.943 20 C -0.077 4.077 21 C -0.135 4.135 22 C -0.149 4.149 23 C -0.161 4.161 24 C -0.151 4.151 25 C -0.140 4.140 26 C 0.009 3.991 27 O -0.295 6.295 28 H 0.101 0.899 29 H 0.109 0.891 30 H 0.098 0.902 31 H 0.182 0.818 32 H 0.111 0.889 33 H 0.060 0.940 34 H 0.245 0.755 35 H 0.067 0.933 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.061 0.939 39 H 0.079 0.921 40 H 0.128 0.872 41 H 0.148 0.852 42 H 0.153 0.847 43 H 0.146 0.854 44 H 0.125 0.875 45 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -8.613 1.006 0.952 8.724 hybrid contribution 2.595 -0.752 0.410 2.733 sum -6.018 0.253 1.362 6.175 Atomic orbital electron populations 1.20615 0.86206 1.04067 1.03679 1.22166 0.98896 0.87528 0.97172 1.67562 1.09881 1.28889 1.14076 1.22583 0.88768 0.98678 0.96006 1.20591 0.96602 0.93390 1.01881 1.21179 0.90523 0.82853 1.01941 1.86236 1.29371 1.25677 1.97686 1.21696 0.94126 0.97787 0.94743 1.19382 0.94770 0.89076 0.88199 1.43521 1.14549 1.61176 1.09396 1.18688 0.82914 1.25338 1.13576 0.94073 1.26155 1.00274 0.95161 0.97151 1.70057 1.28132 1.25630 1.28590 0.85964 0.81837 0.78934 0.78357 1.18620 1.22190 1.20515 1.20080 0.93158 0.86601 0.94452 1.20772 0.96068 0.97078 0.93825 1.20967 1.00937 0.93932 0.97665 1.21262 0.99149 0.95523 0.98972 1.21225 0.99307 1.00307 0.95226 1.21266 1.00389 0.93946 0.99541 1.21036 0.98428 0.95339 0.99171 1.18999 0.89418 0.86684 1.03976 1.84772 1.73854 1.35543 1.35373 0.89901 0.89057 0.90249 0.81753 0.88950 0.93970 0.75455 0.93305 0.93799 0.93778 0.93933 0.92133 0.87167 0.85213 0.84694 0.85386 0.87507 0.74226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.00 9.95 71.24 0.71 -1.29 16 2 C 0.08 2.57 6.80 42.67 0.29 2.86 16 3 N -0.49 -17.28 10.27 -183.49 -1.88 -19.16 16 4 C 0.10 3.49 10.54 84.70 0.89 4.38 16 5 C -0.12 -4.71 5.89 -19.79 -0.12 -4.83 16 6 C 0.11 4.28 6.25 71.24 0.45 4.73 16 7 O -0.58 -18.81 12.17 -148.98 -1.81 -20.63 16 8 C -0.07 -2.81 5.51 -19.58 -0.11 -2.92 16 9 C 0.21 9.01 4.84 85.63 0.41 9.42 16 10 N -0.57 -24.58 2.22 -710.70 -1.58 -26.16 16 11 C -0.27 -13.08 6.39 84.03 0.54 -12.54 16 12 H 0.04 2.07 7.86 -2.91 -0.02 2.05 16 13 C 0.02 0.77 4.82 84.86 0.41 1.17 16 14 N -0.89 -46.35 12.60 21.65 0.27 -46.07 16 15 Si 0.92 39.28 29.26 68.60 2.01 41.29 16 16 H -0.26 -10.75 7.11 99.48 0.71 -10.05 16 17 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 18 H -0.28 -11.64 7.11 99.48 0.71 -10.93 16 19 C 0.18 6.96 5.83 85.63 0.50 7.46 16 20 C -0.07 -2.90 5.40 -19.87 -0.11 -3.00 16 21 C -0.12 -4.27 9.73 22.27 0.22 -4.05 16 22 C -0.13 -4.34 10.05 22.27 0.22 -4.12 16 23 C -0.14 -4.51 10.05 22.27 0.22 -4.29 16 24 C -0.13 -4.50 10.05 22.27 0.22 -4.28 16 25 C -0.12 -4.59 9.67 22.27 0.22 -4.37 16 26 C 0.06 1.91 6.68 22.60 0.15 2.06 16 27 O -0.48 -13.80 11.34 -92.44 -1.05 -14.85 16 28 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.09 1.66 7.53 -2.39 -0.02 1.64 16 30 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.17 5.62 7.02 -2.91 -0.02 5.60 16 32 H 0.09 3.92 4.33 -2.39 -0.01 3.91 16 33 H 0.04 1.67 7.78 -2.38 -0.02 1.65 16 34 H 0.40 9.38 9.12 -74.06 -0.68 8.70 16 35 H 0.05 2.37 6.04 -2.39 -0.01 2.36 16 36 H 0.04 1.88 7.12 -2.39 -0.02 1.87 16 37 H 0.25 13.09 8.32 -92.71 -0.77 12.32 16 38 H 0.04 1.64 7.98 -2.38 -0.02 1.62 16 39 H 0.06 2.00 6.69 -2.39 -0.02 1.98 16 40 H 0.11 3.91 7.83 -2.91 -0.02 3.89 16 41 H 0.13 3.59 8.06 -2.91 -0.02 3.57 16 42 H 0.14 3.42 8.06 -2.91 -0.02 3.39 16 43 H 0.13 3.64 8.06 -2.91 -0.02 3.62 16 44 H 0.11 4.01 8.05 -2.91 -0.02 3.99 16 45 H 0.40 8.21 8.05 -74.06 -0.60 7.61 16 Total: -1.00 -60.22 371.79 0.84 -59.38 By element: Atomic # 1 Polarization: 40.03 SS G_CDS: -0.23 Total: 39.80 kcal Atomic # 6 Polarization: -18.72 SS G_CDS: 5.12 Total: -13.60 kcal Atomic # 7 Polarization: -88.21 SS G_CDS: -3.19 Total: -91.39 kcal Atomic # 8 Polarization: -32.62 SS G_CDS: -2.86 Total: -35.48 kcal Atomic # 14 Polarization: 39.28 SS G_CDS: 2.01 Total: 41.29 kcal Total: -60.22 0.84 -59.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140869575.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.682 kcal (2) G-P(sol) polarization free energy of solvation -60.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds