Wall clock time and date at job start Tue Mar 31 2020 15:11:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.31880 * 119.61567 * 2 1 4 4 C 1.31852 * 121.72310 * 179.97438 * 3 2 1 5 5 C 1.50704 * 119.61497 * 180.02562 * 4 3 2 6 6 F 1.39894 * 109.47425 * 4.99851 * 5 4 3 7 7 F 1.39902 * 109.47056 * 125.00061 * 5 4 3 8 8 F 1.39905 * 109.46991 * 244.99781 * 5 4 3 9 9 C 1.38221 * 120.76996 * 359.97438 * 4 3 2 10 10 C 1.38637 * 119.15502 * 0.02562 * 9 4 3 11 11 C 1.38185 * 119.61777 * 179.73114 * 2 1 3 12 12 C 1.50704 * 120.41792 * 0.02562 * 11 2 1 13 13 N 1.46905 * 109.47068 * 85.89442 * 12 11 2 14 14 C 1.46850 * 110.99646 * 63.74793 * 13 12 11 15 15 C 1.53036 * 109.51962 * 174.15946 * 14 13 12 16 16 C 1.53117 * 109.28059 * 59.18298 * 15 14 13 17 17 C 1.53120 * 109.15870 * 302.34498 * 16 15 14 18 18 H 1.08997 * 109.50129 * 297.70997 * 17 16 15 19 19 C 1.50705 * 109.50325 * 177.63287 * 17 16 15 20 20 H 1.07999 * 119.99740 * 239.99985 * 19 17 16 21 21 C 1.37880 * 119.99713 * 59.99730 * 19 17 16 22 22 N 1.31506 * 120.00113 * 0.02562 * 21 19 17 23 23 Si 1.86799 * 119.99493 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47329 * 90.00365 * 23 21 19 25 25 H 1.48507 * 109.47092 * 210.00136 * 23 21 19 26 26 H 1.48501 * 109.47292 * 330.00073 * 23 21 19 27 27 C 1.46844 * 111.00238 * 299.54273 * 13 12 11 28 28 H 1.08994 * 109.47431 * 83.86289 * 1 2 3 29 29 H 1.09004 * 109.46626 * 203.86255 * 1 2 3 30 30 H 1.08994 * 109.47196 * 323.85767 * 1 2 3 31 31 H 1.07996 * 120.42493 * 179.97438 * 9 4 3 32 32 H 1.07997 * 120.78663 * 180.02562 * 10 9 4 33 33 H 1.08991 * 109.47182 * 205.89497 * 12 11 2 34 34 H 1.09003 * 109.47016 * 325.89707 * 12 11 2 35 35 H 1.08991 * 109.46716 * 294.17692 * 14 13 12 36 36 H 1.09000 * 109.45780 * 54.14723 * 14 13 12 37 37 H 1.09005 * 109.50372 * 179.12356 * 15 14 13 38 38 H 1.09001 * 109.50779 * 299.23994 * 15 14 13 39 39 H 1.09003 * 109.52205 * 62.24540 * 16 15 14 40 40 H 1.08994 * 109.52595 * 182.37386 * 16 15 14 41 41 H 0.97004 * 120.00285 * 179.97438 * 22 21 19 42 42 H 1.09004 * 109.46078 * 305.85947 * 27 13 12 43 43 H 1.09000 * 109.46104 * 65.81612 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1588 1.1465 0.0000 4 6 3.4764 1.1950 0.0005 5 6 4.1725 2.5317 0.0011 6 9 3.2225 3.5521 0.1159 7 9 5.0585 2.5956 1.0819 8 9 4.8828 2.6880 -1.1941 9 6 4.2267 0.0342 0.0016 10 6 3.5766 -1.1903 0.0016 11 6 2.1900 -1.2013 0.0056 12 6 1.4373 -2.5069 0.0112 13 7 1.1074 -2.8877 -1.3687 14 6 2.3248 -3.1355 -2.1516 15 6 1.9438 -3.6685 -3.5346 16 6 1.0575 -2.6421 -4.2455 17 6 -0.1796 -2.3658 -3.3866 18 1 -0.7577 -3.2831 -3.2754 19 6 -1.0289 -1.3133 -4.0514 20 1 -1.2356 -0.3843 -3.5408 21 6 -1.5420 -1.5363 -5.3117 22 7 -1.2906 -2.6676 -5.9332 23 14 -2.5941 -0.2314 -6.1360 24 1 -1.7253 0.6812 -6.9221 25 1 -3.5735 -0.8844 -7.0414 26 1 -3.3199 0.5465 -5.1000 27 6 0.2629 -1.8705 -2.0079 28 1 -0.3634 0.1099 -1.0217 29 1 -0.3633 -0.9399 0.4158 30 1 -0.3633 0.8298 0.6061 31 1 5.3057 0.0804 0.0016 32 1 4.1368 -2.1136 0.0028 33 1 2.0565 -3.2813 0.4637 34 1 0.5184 -2.3940 0.5865 35 1 2.8814 -2.2049 -2.2618 36 1 2.9441 -3.8702 -1.6371 37 1 2.8470 -3.8376 -4.1210 38 1 1.3991 -4.6064 -3.4258 39 1 1.6152 -1.7167 -4.3893 40 1 0.7491 -3.0358 -5.2140 41 1 -1.6519 -2.8247 -6.8196 42 1 -0.6152 -1.6863 -1.3890 43 1 0.8293 -0.9458 -2.1187 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001141432523.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:11:21 Heat of formation + Delta-G solvation = -113.065229 kcal Electronic energy + Delta-G solvation = -29230.205415 eV Core-core repulsion = 24860.185505 eV Total energy + Delta-G solvation = -4370.019910 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.146 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.25243 -47.80336 -47.68221 -41.00417 -38.32593 -34.73083 -33.55218 -32.76165 -31.18031 -30.12246 -28.39457 -27.52681 -25.01700 -24.81600 -22.83367 -22.67415 -21.47803 -21.00558 -18.68206 -18.66583 -18.62951 -18.35962 -16.66236 -16.57169 -15.82628 -15.28065 -14.82105 -14.67998 -14.60118 -14.49470 -14.28278 -14.20440 -14.17121 -13.87115 -13.84992 -13.69426 -13.17411 -13.04989 -12.69218 -12.49561 -12.42833 -12.36597 -12.26608 -11.89616 -11.54202 -11.20772 -10.96788 -10.68623 -10.63817 -10.20601 -10.00636 -9.87989 -9.82735 -9.56342 -9.28138 -8.95922 -8.74460 -8.34333 -7.87119 -6.00787 -4.07187 0.55861 0.98752 2.35384 3.27234 3.29761 3.36868 3.39660 3.40725 3.79303 4.26853 4.32048 4.39485 4.46301 4.56572 4.65459 4.71314 4.94495 5.18952 5.29723 5.40643 5.48345 5.56369 5.62817 5.71338 5.77605 5.85243 5.94847 6.01758 6.08510 6.17579 6.29410 6.38801 6.43188 6.61557 6.67628 6.86431 7.12922 7.29769 7.48745 7.56427 7.63029 7.72644 8.01445 8.11802 8.42409 8.96413 9.57737 11.05134 Molecular weight = 328.15amu Principal moments of inertia in cm(-1) A = 0.013038 B = 0.003999 C = 0.003506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2147.018509 B = 6999.990764 C = 7983.975539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.154 3.846 3 N -0.444 5.444 4 C 0.034 3.966 5 C 0.523 3.477 6 F -0.163 7.163 7 F -0.175 7.175 8 F -0.172 7.172 9 C -0.132 4.132 10 C -0.063 4.063 11 C -0.133 4.133 12 C 0.088 3.912 13 N -0.521 5.521 14 C 0.058 3.942 15 C -0.118 4.118 16 C -0.112 4.112 17 C 0.054 3.946 18 H 0.035 0.965 19 C -0.515 4.515 20 H 0.053 0.947 21 C 0.065 3.935 22 N -0.888 5.888 23 Si 0.888 3.112 24 H -0.282 1.282 25 H -0.286 1.286 26 H -0.274 1.274 27 C 0.054 3.946 28 H 0.103 0.897 29 H 0.086 0.914 30 H 0.075 0.925 31 H 0.143 0.857 32 H 0.145 0.855 33 H 0.083 0.917 34 H 0.092 0.908 35 H 0.025 0.975 36 H 0.058 0.942 37 H 0.046 0.954 38 H 0.062 0.938 39 H 0.028 0.972 40 H 0.091 0.909 41 H 0.260 0.740 42 H 0.070 0.930 43 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.082 2.471 13.878 17.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.014 3.986 3 N -0.153 5.153 4 C -0.105 4.105 5 C 0.467 3.533 6 F -0.144 7.144 7 F -0.157 7.157 8 F -0.154 7.154 9 C -0.152 4.152 10 C -0.090 4.090 11 C -0.137 4.137 12 C -0.041 4.041 13 N -0.243 5.243 14 C -0.070 4.070 15 C -0.155 4.155 16 C -0.150 4.150 17 C 0.036 3.964 18 H 0.053 0.947 19 C -0.554 4.554 20 H 0.071 0.929 21 C -0.137 4.137 22 N -0.526 5.526 23 Si 0.716 3.284 24 H -0.208 1.208 25 H -0.212 1.212 26 H -0.199 1.199 27 C -0.072 4.072 28 H 0.122 0.878 29 H 0.104 0.896 30 H 0.094 0.906 31 H 0.161 0.839 32 H 0.163 0.837 33 H 0.101 0.899 34 H 0.110 0.890 35 H 0.043 0.957 36 H 0.077 0.923 37 H 0.065 0.935 38 H 0.081 0.919 39 H 0.046 0.954 40 H 0.110 0.890 41 H 0.070 0.930 42 H 0.088 0.912 43 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 10.295 2.735 13.707 17.359 hybrid contribution 0.751 1.042 -0.665 1.446 sum 11.045 3.777 13.042 17.503 Atomic orbital electron populations 1.21326 0.87607 1.03583 1.05273 1.21202 0.97422 0.86570 0.93374 1.67008 1.07386 1.30585 1.10353 1.20779 0.91783 0.92272 1.05701 1.17913 0.76725 0.84814 0.73807 1.93229 1.63937 1.61643 1.95567 1.93209 1.69907 1.96752 1.55784 1.93237 1.79354 1.96125 1.46637 1.21693 1.01455 0.92189 0.99871 1.21508 0.93851 0.97963 0.95664 1.21935 0.95038 0.98917 0.97832 1.21445 0.99143 0.90070 0.93396 1.62480 1.17107 1.44478 1.00202 1.22108 0.90929 0.98497 0.95437 1.21679 0.99350 1.00667 0.93848 1.21664 0.95666 0.95517 1.02123 1.18688 0.92988 0.96915 0.87854 0.94701 1.21105 1.30821 1.02213 1.01227 0.92866 1.24908 0.96182 0.95321 0.97252 1.69879 1.45084 1.23628 1.14038 0.86658 0.80359 0.81856 0.79517 1.20800 1.21219 1.19866 1.22818 0.94696 0.91300 0.98419 0.87831 0.89586 0.90571 0.83942 0.83726 0.89865 0.88980 0.95692 0.92313 0.93502 0.91941 0.95364 0.89018 0.93034 0.91166 0.95710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.62 8.00 36.01 0.29 -1.33 16 2 C 0.15 2.23 5.68 -82.59 -0.47 1.77 16 3 N -0.44 -6.96 9.65 -5.74 -0.06 -7.01 16 4 C 0.03 0.48 6.26 -82.59 -0.52 -0.04 16 5 C 0.52 6.90 3.32 36.01 0.12 7.02 16 6 F -0.16 -2.36 16.85 2.25 0.04 -2.32 16 7 F -0.18 -2.08 17.16 2.25 0.04 -2.04 16 8 F -0.17 -2.29 17.28 2.25 0.04 -2.25 16 9 C -0.13 -1.53 9.61 -39.44 -0.38 -1.91 16 10 C -0.06 -0.72 8.56 -39.28 -0.34 -1.06 16 11 C -0.13 -1.72 4.06 -104.48 -0.42 -2.15 16 12 C 0.09 1.09 5.31 -4.97 -0.03 1.07 16 13 N -0.52 -8.43 4.86 -236.12 -1.15 -9.58 16 14 C 0.06 0.92 4.84 -3.83 -0.02 0.91 16 15 C -0.12 -2.17 6.09 -26.65 -0.16 -2.34 16 16 C -0.11 -2.56 5.02 -26.61 -0.13 -2.69 16 17 C 0.05 1.29 2.26 -91.69 -0.21 1.08 16 18 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 19 C -0.51 -13.60 8.57 -34.44 -0.29 -13.90 16 20 H 0.05 1.39 7.74 -52.49 -0.41 0.98 16 21 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 22 N -0.89 -24.79 11.35 55.43 0.63 -24.16 16 23 Si 0.89 21.01 29.54 -169.99 -5.02 15.99 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 25 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 26 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 27 C 0.05 1.04 2.59 -3.84 -0.01 1.03 16 28 H 0.10 1.61 5.96 -51.93 -0.31 1.30 16 29 H 0.09 1.00 5.12 -51.93 -0.27 0.73 16 30 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.14 1.26 8.06 -52.49 -0.42 0.83 16 32 H 0.15 1.24 8.06 -52.49 -0.42 0.82 16 33 H 0.08 0.86 8.03 -51.93 -0.42 0.44 16 34 H 0.09 1.05 6.09 -51.93 -0.32 0.73 16 35 H 0.02 0.41 6.70 -51.93 -0.35 0.07 16 36 H 0.06 0.78 8.09 -51.93 -0.42 0.36 16 37 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 39 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.09 2.38 6.15 -51.93 -0.32 2.06 16 41 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 42 H 0.07 1.28 5.74 -51.93 -0.30 0.98 16 43 H 0.02 0.50 5.69 -51.93 -0.30 0.21 16 LS Contribution 343.93 15.07 5.18 5.18 Total: -1.00 -28.74 343.93 -8.45 -37.20 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: -5.49 Total: -0.11 kcal Atomic # 6 Polarization: -8.22 SS G_CDS: -2.67 Total: -10.89 kcal Atomic # 7 Polarization: -40.18 SS G_CDS: -0.57 Total: -40.75 kcal Atomic # 9 Polarization: -6.73 SS G_CDS: 0.12 Total: -6.62 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -28.74 -8.45 -37.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001141432523.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.869 kcal (2) G-P(sol) polarization free energy of solvation -28.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds