Wall clock time and date at job start Tue Mar 31 2020 15:11:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.31880 * 119.61567 * 2 1 4 4 C 1.31852 * 121.72310 * 179.97438 * 3 2 1 5 5 C 1.50704 * 119.61497 * 180.02562 * 4 3 2 6 6 F 1.39894 * 109.47425 * 4.99851 * 5 4 3 7 7 F 1.39902 * 109.47056 * 125.00061 * 5 4 3 8 8 F 1.39905 * 109.46991 * 244.99781 * 5 4 3 9 9 C 1.38221 * 120.76996 * 359.97438 * 4 3 2 10 10 C 1.38637 * 119.15502 * 0.02562 * 9 4 3 11 11 C 1.38185 * 119.61777 * 179.73114 * 2 1 3 12 12 C 1.50704 * 120.41792 * 0.02562 * 11 2 1 13 13 N 1.46905 * 109.47068 * 85.89442 * 12 11 2 14 14 C 1.46850 * 110.99646 * 63.74793 * 13 12 11 15 15 C 1.53036 * 109.51962 * 174.15946 * 14 13 12 16 16 C 1.53117 * 109.28059 * 59.18298 * 15 14 13 17 17 C 1.53120 * 109.15870 * 302.34498 * 16 15 14 18 18 H 1.08997 * 109.50129 * 297.70997 * 17 16 15 19 19 C 1.50705 * 109.50325 * 177.63287 * 17 16 15 20 20 H 1.07999 * 119.99740 * 239.99985 * 19 17 16 21 21 C 1.37880 * 119.99713 * 59.99730 * 19 17 16 22 22 N 1.31506 * 120.00113 * 0.02562 * 21 19 17 23 23 Si 1.86799 * 119.99493 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47329 * 90.00365 * 23 21 19 25 25 H 1.48507 * 109.47092 * 210.00136 * 23 21 19 26 26 H 1.48501 * 109.47292 * 330.00073 * 23 21 19 27 27 C 1.46844 * 111.00238 * 299.54273 * 13 12 11 28 28 H 1.08994 * 109.47431 * 83.86289 * 1 2 3 29 29 H 1.09004 * 109.46626 * 203.86255 * 1 2 3 30 30 H 1.08994 * 109.47196 * 323.85767 * 1 2 3 31 31 H 1.07996 * 120.42493 * 179.97438 * 9 4 3 32 32 H 1.07997 * 120.78663 * 180.02562 * 10 9 4 33 33 H 1.08991 * 109.47182 * 205.89497 * 12 11 2 34 34 H 1.09003 * 109.47016 * 325.89707 * 12 11 2 35 35 H 1.08991 * 109.46716 * 294.17692 * 14 13 12 36 36 H 1.09000 * 109.45780 * 54.14723 * 14 13 12 37 37 H 1.09005 * 109.50372 * 179.12356 * 15 14 13 38 38 H 1.09001 * 109.50779 * 299.23994 * 15 14 13 39 39 H 1.09003 * 109.52205 * 62.24540 * 16 15 14 40 40 H 1.08994 * 109.52595 * 182.37386 * 16 15 14 41 41 H 0.97004 * 120.00285 * 179.97438 * 22 21 19 42 42 H 1.09004 * 109.46078 * 305.85947 * 27 13 12 43 43 H 1.09000 * 109.46104 * 65.81612 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1588 1.1465 0.0000 4 6 3.4764 1.1950 0.0005 5 6 4.1725 2.5317 0.0011 6 9 3.2225 3.5521 0.1159 7 9 5.0585 2.5956 1.0819 8 9 4.8828 2.6880 -1.1941 9 6 4.2267 0.0342 0.0016 10 6 3.5766 -1.1903 0.0016 11 6 2.1900 -1.2013 0.0056 12 6 1.4373 -2.5069 0.0112 13 7 1.1074 -2.8877 -1.3687 14 6 2.3248 -3.1355 -2.1516 15 6 1.9438 -3.6685 -3.5346 16 6 1.0575 -2.6421 -4.2455 17 6 -0.1796 -2.3658 -3.3866 18 1 -0.7577 -3.2831 -3.2754 19 6 -1.0289 -1.3133 -4.0514 20 1 -1.2356 -0.3843 -3.5408 21 6 -1.5420 -1.5363 -5.3117 22 7 -1.2906 -2.6676 -5.9332 23 14 -2.5941 -0.2314 -6.1360 24 1 -1.7253 0.6812 -6.9221 25 1 -3.5735 -0.8844 -7.0414 26 1 -3.3199 0.5465 -5.1000 27 6 0.2629 -1.8705 -2.0079 28 1 -0.3634 0.1099 -1.0217 29 1 -0.3633 -0.9399 0.4158 30 1 -0.3633 0.8298 0.6061 31 1 5.3057 0.0804 0.0016 32 1 4.1368 -2.1136 0.0028 33 1 2.0565 -3.2813 0.4637 34 1 0.5184 -2.3940 0.5865 35 1 2.8814 -2.2049 -2.2618 36 1 2.9441 -3.8702 -1.6371 37 1 2.8470 -3.8376 -4.1210 38 1 1.3991 -4.6064 -3.4258 39 1 1.6152 -1.7167 -4.3893 40 1 0.7491 -3.0358 -5.2140 41 1 -1.6519 -2.8247 -6.8196 42 1 -0.6152 -1.6863 -1.3890 43 1 0.8293 -0.9458 -2.1187 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001141432523.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:11:20 Heat of formation + Delta-G solvation = -129.826770 kcal Electronic energy + Delta-G solvation = -29230.932250 eV Core-core repulsion = 24860.185505 eV Total energy + Delta-G solvation = -4370.746745 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.146 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -51.28006 -48.80335 -48.75047 -42.02305 -39.67773 -36.20174 -34.71610 -34.21395 -32.55429 -31.74219 -29.50977 -28.66048 -26.87624 -25.96603 -23.98522 -23.76646 -23.02369 -22.26668 -20.23227 -19.68752 -19.66789 -19.38385 -18.47883 -17.64323 -17.04486 -16.69861 -16.31374 -15.79840 -15.75031 -15.56345 -15.51361 -15.37439 -15.19807 -15.00162 -14.91377 -14.90310 -14.54751 -14.37824 -14.09528 -14.02065 -13.65865 -13.51145 -13.47381 -13.02770 -12.98607 -12.86465 -12.65965 -12.43868 -12.06436 -11.79784 -11.65831 -11.40277 -11.04739 -10.81498 -10.79902 -10.60221 -10.37273 -10.11730 -9.17317 -8.07924 -6.20668 -0.41409 0.05990 1.34841 1.38739 1.40765 1.49636 2.28391 2.39420 2.42303 2.80241 3.16507 3.19812 3.27130 3.43205 3.63692 3.72230 3.80133 4.00017 4.21767 4.30484 4.32234 4.39602 4.55388 4.57265 4.62185 4.67260 4.77914 4.82235 4.90119 4.94192 5.00157 5.07378 5.10567 5.14177 5.21718 5.41964 5.46654 5.54111 5.64602 5.96811 6.12103 6.21237 6.32423 6.46084 6.57479 6.92540 7.47115 8.96413 Molecular weight = 328.15amu Principal moments of inertia in cm(-1) A = 0.013038 B = 0.003999 C = 0.003506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2147.018509 B = 6999.990764 C = 7983.975539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.133 3.867 3 N -0.478 5.478 4 C 0.014 3.986 5 C 0.525 3.475 6 F -0.175 7.175 7 F -0.166 7.166 8 F -0.174 7.174 9 C -0.126 4.126 10 C -0.056 4.056 11 C -0.137 4.137 12 C 0.091 3.909 13 N -0.528 5.528 14 C 0.063 3.937 15 C -0.112 4.112 16 C -0.105 4.105 17 C 0.050 3.950 18 H 0.001 0.999 19 C -0.531 4.531 20 H 0.049 0.951 21 C 0.017 3.983 22 N -0.914 5.914 23 Si 0.944 3.056 24 H -0.282 1.282 25 H -0.282 1.282 26 H -0.267 1.267 27 C 0.075 3.925 28 H 0.075 0.925 29 H 0.102 0.898 30 H 0.080 0.920 31 H 0.173 0.827 32 H 0.183 0.817 33 H 0.119 0.881 34 H 0.101 0.899 35 H 0.022 0.978 36 H 0.102 0.898 37 H 0.065 0.935 38 H 0.055 0.945 39 H 0.010 0.990 40 H 0.055 0.945 41 H 0.259 0.741 42 H 0.075 0.925 43 H 0.012 0.988 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.879 1.621 15.607 20.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.007 4.007 3 N -0.187 5.187 4 C -0.125 4.125 5 C 0.470 3.530 6 F -0.156 7.156 7 F -0.148 7.148 8 F -0.155 7.155 9 C -0.146 4.146 10 C -0.082 4.082 11 C -0.141 4.141 12 C -0.037 4.037 13 N -0.250 5.250 14 C -0.064 4.064 15 C -0.150 4.150 16 C -0.144 4.144 17 C 0.032 3.968 18 H 0.019 0.981 19 C -0.570 4.570 20 H 0.067 0.933 21 C -0.181 4.181 22 N -0.553 5.553 23 Si 0.770 3.230 24 H -0.208 1.208 25 H -0.208 1.208 26 H -0.192 1.192 27 C -0.052 4.052 28 H 0.094 0.906 29 H 0.121 0.879 30 H 0.099 0.901 31 H 0.191 0.809 32 H 0.200 0.800 33 H 0.137 0.863 34 H 0.119 0.881 35 H 0.040 0.960 36 H 0.120 0.880 37 H 0.084 0.916 38 H 0.074 0.926 39 H 0.029 0.971 40 H 0.073 0.927 41 H 0.068 0.932 42 H 0.093 0.907 43 H 0.030 0.970 Dipole moment (debyes) X Y Z Total from point charges 12.096 1.891 15.453 19.715 hybrid contribution 0.228 1.316 -1.188 1.787 sum 12.323 3.207 14.266 19.122 Atomic orbital electron populations 1.21253 0.87766 1.04721 1.03667 1.21374 0.97703 0.87208 0.94375 1.66925 1.08567 1.31599 1.11629 1.21016 0.91660 0.93207 1.06636 1.17911 0.76630 0.84553 0.73915 1.93200 1.64531 1.62233 1.95642 1.93221 1.69533 1.96704 1.55306 1.93230 1.79345 1.96131 1.46837 1.22077 1.02913 0.91433 0.98132 1.21963 0.93240 0.99245 0.93729 1.22017 0.95981 0.98268 0.97882 1.21577 1.00430 0.90798 0.90899 1.62380 1.17343 1.43401 1.01889 1.22107 0.91011 0.99313 0.94015 1.21593 0.98969 0.98744 0.95716 1.21465 0.96097 0.95896 1.00915 1.18623 0.92688 0.94731 0.90794 0.98061 1.21508 1.31165 1.02719 1.01583 0.93289 1.25619 0.97445 0.97082 0.97992 1.70015 1.45996 1.25107 1.14204 0.85771 0.78933 0.79631 0.78623 1.20791 1.20769 1.19186 1.22397 0.95468 0.91246 0.96074 0.90632 0.87935 0.90124 0.80925 0.79973 0.86271 0.88087 0.96006 0.88028 0.91607 0.92613 0.97070 0.92684 0.93175 0.90720 0.96973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.13 8.00 71.24 0.57 -2.56 16 2 C 0.13 3.71 5.68 42.54 0.24 3.95 16 3 N -0.48 -14.71 9.65 -172.07 -1.66 -16.37 16 4 C 0.01 0.37 6.26 42.55 0.27 0.63 16 5 C 0.53 13.36 3.32 71.24 0.24 13.60 16 6 F -0.17 -5.08 16.85 44.97 0.76 -4.32 16 7 F -0.17 -3.69 17.16 44.97 0.77 -2.92 16 8 F -0.17 -4.46 17.28 44.97 0.78 -3.68 16 9 C -0.13 -2.50 9.61 22.36 0.21 -2.28 16 10 C -0.06 -1.02 8.56 22.47 0.19 -0.83 16 11 C -0.14 -3.14 4.06 -19.77 -0.08 -3.22 16 12 C 0.09 1.90 5.31 85.56 0.45 2.35 16 13 N -0.53 -15.77 4.86 -900.94 -4.38 -20.15 16 14 C 0.06 1.79 4.84 86.32 0.42 2.21 16 15 C -0.11 -4.01 6.09 30.65 0.19 -3.82 16 16 C -0.11 -4.95 5.02 30.67 0.15 -4.80 16 17 C 0.05 2.46 2.26 -11.49 -0.03 2.44 16 18 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 19 C -0.53 -28.98 8.57 25.60 0.22 -28.76 16 20 H 0.05 2.64 7.74 -2.91 -0.02 2.62 16 21 C 0.02 0.97 5.30 84.66 0.45 1.42 16 22 N -0.91 -52.75 11.35 21.45 0.24 -52.51 16 23 Si 0.94 44.00 29.54 68.60 2.03 46.03 16 24 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 25 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 26 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 27 C 0.08 2.88 2.59 86.32 0.22 3.10 16 28 H 0.08 2.44 5.96 -2.39 -0.01 2.42 16 29 H 0.10 2.27 5.12 -2.38 -0.01 2.26 16 30 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.17 2.30 8.06 -2.91 -0.02 2.27 16 32 H 0.18 1.93 8.06 -2.91 -0.02 1.91 16 33 H 0.12 1.72 8.03 -2.39 -0.02 1.71 16 34 H 0.10 1.95 6.09 -2.39 -0.01 1.94 16 35 H 0.02 0.64 6.70 -2.39 -0.02 0.63 16 36 H 0.10 2.09 8.09 -2.39 -0.02 2.08 16 37 H 0.07 2.07 8.14 -2.38 -0.02 2.06 16 38 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 39 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 40 H 0.05 2.97 6.15 -2.39 -0.01 2.95 16 41 H 0.26 14.31 8.31 -92.71 -0.77 13.54 16 42 H 0.07 2.73 5.74 -2.39 -0.01 2.72 16 43 H 0.01 0.50 5.69 -2.39 -0.01 0.48 16 Total: -1.00 -65.55 343.93 3.30 -62.24 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: 1.05 Total: 8.26 kcal Atomic # 6 Polarization: -20.30 SS G_CDS: 3.72 Total: -16.58 kcal Atomic # 7 Polarization: -83.24 SS G_CDS: -5.79 Total: -89.03 kcal Atomic # 9 Polarization: -13.22 SS G_CDS: 2.31 Total: -10.92 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Total: -65.55 3.30 -62.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001141432523.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.586 kcal (2) G-P(sol) polarization free energy of solvation -65.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds