Wall clock time and date at job start Tue Mar 31 2020 15:12:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35999 * 117.00016 * 2 1 4 4 C 1.38559 * 120.07523 * 0.02562 * 3 2 1 5 5 C 1.38240 * 120.00029 * 179.70286 * 4 3 2 6 6 C 1.38251 * 120.14900 * 0.55475 * 5 4 3 7 7 C 1.50696 * 119.92967 * 179.72395 * 6 5 4 8 8 C 1.52998 * 109.47138 * 269.72082 * 7 6 5 9 9 N 1.46500 * 109.47159 * 179.97438 * 8 7 6 10 10 C 1.38375 * 119.99744 * 180.02562 * 9 8 7 11 11 C 1.39706 * 119.43201 * 359.72844 * 10 9 8 12 12 C 1.36560 * 119.49323 * 179.74181 * 11 10 9 13 13 C 1.41329 * 118.40338 * 0.51799 * 12 11 10 14 14 C 1.41210 * 120.56381 * 179.72516 * 13 12 11 15 15 H 1.07999 * 119.99616 * 204.90776 * 14 13 12 16 16 C 1.39860 * 120.00354 * 24.90432 * 14 13 12 17 17 N 1.30904 * 120.00058 * 14.67304 * 16 14 13 18 18 Si 1.86797 * 120.00372 * 194.66779 * 16 14 13 19 19 H 1.48506 * 109.46976 * 60.00101 * 18 16 14 20 20 H 1.48494 * 109.47424 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47021 * 300.00718 * 18 16 14 22 22 C 1.40749 * 118.86460 * 359.75079 * 13 12 11 23 23 C 1.50694 * 119.81827 * 179.97438 * 22 13 12 24 24 N 1.31488 * 120.36673 * 359.97253 * 22 13 12 25 25 C 1.38243 * 120.14290 * 359.44556 * 6 5 4 26 26 C 1.38570 * 119.99904 * 0.27416 * 25 6 5 27 27 O 1.35998 * 120.07301 * 179.97438 * 26 25 6 28 28 H 1.08999 * 109.47531 * 300.00576 * 1 2 3 29 29 H 1.09004 * 109.47038 * 60.00154 * 1 2 3 30 30 H 1.08998 * 109.47274 * 179.97438 * 1 2 3 31 31 H 1.08001 * 119.99963 * 0.02562 * 4 3 2 32 32 H 1.08006 * 119.92648 * 180.29433 * 5 4 3 33 33 H 1.09005 * 109.47081 * 149.72082 * 7 6 5 34 34 H 1.08999 * 109.47331 * 29.72836 * 7 6 5 35 35 H 1.09003 * 109.46616 * 60.00008 * 8 7 6 36 36 H 1.08996 * 109.47146 * 300.00672 * 8 7 6 37 37 H 0.96992 * 120.00064 * 0.02562 * 9 8 7 38 38 H 1.08000 * 120.24932 * 359.97438 * 11 10 9 39 39 H 1.07997 * 120.79898 * 180.24552 * 12 11 10 40 40 H 0.97002 * 120.00150 * 180.02562 * 17 16 14 41 41 H 1.09002 * 109.47420 * 269.97803 * 23 22 13 42 42 H 1.09004 * 109.47237 * 29.97456 * 23 22 13 43 43 H 1.09001 * 109.47116 * 149.97328 * 23 22 13 44 44 H 1.08002 * 120.00467 * 180.25724 * 25 6 5 45 45 H 0.96705 * 113.99565 * 90.00295 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2933 2.3748 0.0005 5 6 1.9225 3.6057 0.0067 6 6 3.3030 3.6799 0.0009 7 6 3.9837 5.0243 0.0014 8 6 4.2140 5.4799 -1.4409 9 7 4.8752 6.7872 -1.4404 10 6 5.1870 7.4052 -2.6386 11 6 4.8711 6.7692 -3.8417 12 6 5.1735 7.3804 -5.0249 13 6 5.8111 8.6411 -4.9866 14 6 6.1497 9.3111 -6.1827 15 1 6.9551 10.0306 -6.1891 16 6 5.4423 9.0428 -7.3589 17 7 4.3010 8.4039 -7.3051 18 14 6.1258 9.5964 -9.0069 19 1 7.4496 8.9621 -9.2319 20 1 5.1931 9.1940 -10.0900 21 1 6.2780 11.0735 -9.0087 22 6 6.1033 9.2171 -3.7361 23 6 6.7833 10.5603 -3.6702 24 7 5.7862 8.5897 -2.6249 25 6 4.0603 2.5234 0.0003 26 6 3.4359 1.2863 -0.0001 27 8 4.1795 0.1476 -0.0012 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 0.2147 2.3197 0.0014 32 1 1.3342 4.5115 0.0120 33 1 4.9419 4.9462 0.5151 34 1 3.3539 5.7503 0.5157 35 1 3.2557 5.5580 -1.9546 36 1 4.8437 4.7539 -1.9551 37 1 5.0944 7.2195 -0.6003 38 1 4.3880 5.8033 -3.8360 39 1 4.9352 6.9097 -5.9672 40 1 3.8105 8.2176 -8.1209 41 1 7.8642 10.4200 -3.6544 42 1 6.5064 11.1509 -4.5435 43 1 6.4712 11.0815 -2.7652 44 1 5.1386 2.5839 -0.0001 45 1 4.3950 -0.1822 0.8820 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155885130.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:12:17 Heat of formation + Delta-G solvation = -30.019195 kcal Electronic energy + Delta-G solvation = -26245.563188 eV Core-core repulsion = 22421.001165 eV Total energy + Delta-G solvation = -3824.562023 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.65936 -38.68945 -38.18964 -37.21616 -35.53524 -33.74483 -32.25302 -30.92581 -30.36073 -29.98198 -28.32231 -26.96901 -26.72907 -24.23527 -23.20423 -22.86057 -21.40940 -21.00491 -19.77891 -18.71332 -17.78751 -17.17422 -16.82882 -16.42549 -16.05884 -15.47016 -15.05453 -14.96291 -14.82974 -14.51294 -14.24608 -14.02961 -13.67497 -13.58632 -13.03620 -12.79890 -12.54715 -12.40233 -12.20752 -11.84821 -11.79501 -11.63381 -11.55224 -11.44956 -11.29902 -11.09530 -11.00149 -10.92083 -10.78770 -10.76045 -10.51147 -9.64560 -9.33103 -9.07326 -8.59040 -8.25424 -8.10151 -7.95535 -6.76120 -6.53567 -4.14291 0.99083 1.10091 2.78451 2.94378 3.02416 3.10486 3.13592 3.33760 3.35127 3.91461 3.98830 4.15043 4.52327 4.66885 4.74855 4.80793 4.83470 4.97540 5.09343 5.11804 5.18427 5.25392 5.36706 5.63379 5.64453 5.72062 5.95679 5.98847 5.98901 6.07458 6.20021 6.41613 6.43281 6.46710 6.56418 6.61230 6.72219 6.84137 6.93675 7.09699 7.26750 7.44222 7.52052 7.52181 7.81519 7.95437 8.31557 8.48828 8.70357 8.89801 8.97526 9.78258 10.28884 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.016851 B = 0.002192 C = 0.002047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.248808 B =12768.918846 C =13674.775463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.310 6.310 3 C 0.096 3.904 4 C -0.193 4.193 5 C -0.081 4.081 6 C -0.094 4.094 7 C -0.086 4.086 8 C 0.150 3.850 9 N -0.746 5.746 10 C 0.285 3.715 11 C -0.208 4.208 12 C -0.091 4.091 13 C 0.032 3.968 14 C -0.452 4.452 15 H 0.079 0.921 16 C 0.072 3.928 17 N -0.809 5.809 18 Si 0.908 3.092 19 H -0.265 1.265 20 H -0.280 1.280 21 H -0.266 1.266 22 C 0.035 3.965 23 C -0.070 4.070 24 N -0.522 5.522 25 C -0.100 4.100 26 C 0.075 3.925 27 O -0.486 6.486 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.099 0.901 31 H 0.132 0.868 32 H 0.130 0.870 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.051 0.949 36 H 0.051 0.949 37 H 0.388 0.612 38 H 0.096 0.904 39 H 0.129 0.871 40 H 0.278 0.722 41 H 0.047 0.953 42 H 0.068 0.932 43 H 0.046 0.954 44 H 0.137 0.863 45 H 0.384 0.616 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.757 -13.387 14.342 20.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.224 6.224 3 C 0.050 3.950 4 C -0.212 4.212 5 C -0.099 4.099 6 C -0.095 4.095 7 C -0.124 4.124 8 C 0.024 3.976 9 N -0.386 5.386 10 C 0.052 3.948 11 C -0.232 4.232 12 C -0.117 4.117 13 C 0.027 3.973 14 C -0.483 4.483 15 H 0.097 0.903 16 C -0.144 4.144 17 N -0.436 5.436 18 Si 0.733 3.267 19 H -0.190 1.190 20 H -0.205 1.205 21 H -0.191 1.191 22 C -0.103 4.103 23 C -0.127 4.127 24 N -0.238 5.238 25 C -0.118 4.118 26 C 0.029 3.971 27 O -0.295 6.295 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.118 0.882 31 H 0.150 0.850 32 H 0.148 0.852 33 H 0.096 0.904 34 H 0.097 0.903 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.221 0.779 38 H 0.114 0.886 39 H 0.147 0.853 40 H 0.089 0.911 41 H 0.065 0.935 42 H 0.086 0.914 43 H 0.065 0.935 44 H 0.155 0.845 45 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -6.786 -13.359 14.236 20.668 hybrid contribution -0.312 -0.107 -0.873 0.934 sum -7.099 -13.466 13.363 20.255 Atomic orbital electron populations 1.23082 0.78534 1.03967 1.01401 1.86137 1.21173 1.26338 1.88717 1.19465 0.91769 0.84883 0.98846 1.21146 1.00094 0.91844 1.08072 1.20931 0.93988 0.97249 0.97704 1.19555 0.93318 0.94639 1.01994 1.20712 1.00892 0.93010 0.97772 1.20966 0.96836 0.85202 0.94604 1.43587 1.69658 1.20198 1.05170 1.17676 1.00441 0.91493 0.85178 1.20816 1.08680 1.00963 0.92779 1.21342 0.99319 0.94394 0.96685 1.18166 0.94022 0.92205 0.92919 1.19312 1.15509 1.21206 0.92323 0.90290 1.25860 0.93689 0.93758 1.01064 1.69801 1.10840 1.32699 1.30232 0.86371 0.79705 0.79911 0.80716 1.19005 1.20535 1.19095 1.20727 1.05495 0.96483 0.87606 1.20246 0.98084 0.93420 1.00997 1.66304 1.16137 1.08534 1.32851 1.21203 1.00709 0.90301 0.99615 1.17711 0.86098 0.86571 1.06675 1.84920 1.71794 1.39674 1.33104 0.92697 0.92514 0.88220 0.85029 0.85200 0.90386 0.90322 0.93123 0.93119 0.77865 0.88585 0.85312 0.91070 0.93457 0.91367 0.93459 0.84478 0.76088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.81 101.05 0.99 1.16 16 2 O -0.31 -3.30 10.28 -34.24 -0.35 -3.66 16 3 C 0.10 1.07 6.70 -39.12 -0.26 0.81 16 4 C -0.19 -1.89 9.04 -39.46 -0.36 -2.25 16 5 C -0.08 -0.82 9.69 -39.58 -0.38 -1.20 16 6 C -0.09 -1.02 5.13 -104.62 -0.54 -1.56 16 7 C -0.09 -0.94 5.46 -27.89 -0.15 -1.09 16 8 C 0.15 2.22 4.85 -4.04 -0.02 2.20 16 9 N -0.75 -13.59 5.70 -60.35 -0.34 -13.93 16 10 C 0.28 6.61 7.64 -155.12 -1.19 5.42 16 11 C -0.21 -5.00 9.24 -39.64 -0.37 -5.37 16 12 C -0.09 -2.39 8.73 -39.01 -0.34 -2.73 16 13 C 0.03 0.86 5.59 -106.64 -0.60 0.26 16 14 C -0.45 -11.89 8.16 -37.85 -0.31 -12.20 16 15 H 0.08 1.97 6.84 -52.49 -0.36 1.61 16 16 C 0.07 1.81 5.22 -17.34 -0.09 1.72 16 17 N -0.81 -21.04 10.83 55.54 0.60 -20.44 16 18 Si 0.91 18.83 29.58 -169.99 -5.03 13.80 16 19 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 20 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 21 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 22 C 0.04 0.90 6.86 -81.79 -0.56 0.34 16 23 C -0.07 -1.50 9.58 36.00 0.34 -1.16 16 24 N -0.52 -12.95 10.29 -8.05 -0.08 -13.03 16 25 C -0.10 -1.09 9.63 -39.46 -0.38 -1.47 16 26 C 0.07 0.86 6.72 -39.12 -0.26 0.60 16 27 O -0.49 -5.29 13.29 -34.24 -0.46 -5.74 16 28 H 0.05 0.28 7.66 -51.93 -0.40 -0.12 16 29 H 0.06 0.34 7.67 -51.93 -0.40 -0.06 16 30 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.13 0.99 6.30 -52.49 -0.33 0.66 16 32 H 0.13 1.12 8.06 -52.48 -0.42 0.70 16 33 H 0.08 0.79 8.08 -51.93 -0.42 0.37 16 34 H 0.08 0.79 8.08 -51.93 -0.42 0.37 16 35 H 0.05 0.79 7.91 -51.93 -0.41 0.38 16 36 H 0.05 0.79 7.89 -51.93 -0.41 0.38 16 37 H 0.39 6.48 8.59 -40.82 -0.35 6.13 16 38 H 0.10 2.08 6.64 -52.49 -0.35 1.74 16 39 H 0.13 3.47 6.17 -52.49 -0.32 3.15 16 40 H 0.28 6.66 8.30 -40.82 -0.34 6.32 16 41 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.07 1.45 6.75 -51.93 -0.35 1.10 16 43 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.14 1.36 8.06 -52.49 -0.42 0.94 16 45 H 0.38 2.29 9.06 45.56 0.41 2.70 16 LS Contribution 375.84 15.07 5.66 5.66 Total: -1.00 -32.00 375.84 -9.82 -41.81 By element: Atomic # 1 Polarization: 17.40 SS G_CDS: -5.35 Total: 12.04 kcal Atomic # 6 Polarization: -12.06 SS G_CDS: -4.47 Total: -16.52 kcal Atomic # 7 Polarization: -47.58 SS G_CDS: 0.17 Total: -47.40 kcal Atomic # 8 Polarization: -8.59 SS G_CDS: -0.81 Total: -9.40 kcal Atomic # 14 Polarization: 18.83 SS G_CDS: -5.03 Total: 13.80 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.00 -9.82 -41.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155885130.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.795 kcal (2) G-P(sol) polarization free energy of solvation -31.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds