Wall clock time and date at job start Tue Mar 31 2020 15:12:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31487 * 119.81410 * 2 1 4 4 C 1.32743 * 121.73059 * 179.97438 * 3 2 1 5 5 N 1.38369 * 119.42890 * 180.02562 * 4 3 2 6 6 C 1.46497 * 119.99822 * 180.02562 * 5 4 3 7 7 C 1.52995 * 109.47295 * 179.97438 * 6 5 4 8 8 H 1.09002 * 109.47363 * 305.00244 * 7 6 5 9 9 O 1.42904 * 109.47361 * 64.99681 * 7 6 5 10 10 C 1.52997 * 109.47611 * 184.99860 * 7 6 5 11 11 O 1.42904 * 109.47417 * 174.99979 * 10 7 6 12 12 C 1.35896 * 116.99754 * 180.02562 * 11 10 7 13 13 C 1.38731 * 120.05996 * 359.72060 * 12 11 10 14 14 C 1.38146 * 119.94583 * 179.74434 * 13 12 11 15 15 C 1.38262 * 120.05170 * 0.51291 * 14 13 12 16 16 C 1.38268 * 120.11541 * 359.76658 * 15 14 13 17 17 C 1.38145 * 120.05411 * 359.97438 * 16 15 14 18 18 C 1.39704 * 121.13606 * 0.02562 * 4 3 2 19 19 C 1.36564 * 119.49962 * 0.02562 * 18 4 3 20 20 C 1.40753 * 119.81789 * 180.02562 * 2 1 3 21 21 C 1.41206 * 120.56979 * 359.72364 * 20 2 1 22 22 H 1.08003 * 120.00071 * 329.99345 * 21 20 2 23 23 C 1.39874 * 120.00054 * 149.99155 * 21 20 2 24 24 N 1.30897 * 119.99753 * 162.22512 * 23 21 20 25 25 Si 1.86802 * 119.99746 * 342.23130 * 23 21 20 26 26 H 1.48496 * 109.47524 * 95.38239 * 25 23 21 27 27 H 1.48504 * 109.46780 * 215.38533 * 25 23 21 28 28 H 1.48499 * 109.47245 * 335.37754 * 25 23 21 29 29 H 1.09003 * 109.46643 * 269.97336 * 1 2 3 30 30 H 1.08993 * 109.47369 * 29.97787 * 1 2 3 31 31 H 1.09006 * 109.46784 * 149.98208 * 1 2 3 32 32 H 0.97001 * 119.99633 * 359.97438 * 5 4 3 33 33 H 1.09003 * 109.47242 * 299.99856 * 6 5 4 34 34 H 1.09004 * 109.47134 * 59.99949 * 6 5 4 35 35 H 0.96703 * 113.99468 * 59.99778 * 9 7 6 36 36 H 1.09002 * 109.47002 * 295.00374 * 10 7 6 37 37 H 1.09009 * 109.46832 * 55.00008 * 10 7 6 38 38 H 1.08000 * 120.02364 * 0.02562 * 13 12 11 39 39 H 1.08001 * 119.97443 * 180.27848 * 14 13 12 40 40 H 1.08001 * 119.94185 * 179.73933 * 15 14 13 41 41 H 1.07998 * 119.97498 * 179.97438 * 16 15 14 42 42 H 1.07997 * 120.02400 * 179.97438 * 17 16 15 43 43 H 1.08007 * 120.25197 * 179.97438 * 18 4 3 44 44 H 1.08001 * 120.79650 * 180.02562 * 19 18 4 45 45 H 0.96999 * 119.99728 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1608 1.1408 0.0000 4 6 3.4875 1.1852 0.0005 5 7 4.1266 2.4124 0.0010 6 6 5.5902 2.4760 0.0010 7 6 6.0372 3.9392 0.0010 8 1 5.5796 4.4589 -0.8408 9 8 5.6318 4.5612 1.2220 10 6 7.5605 4.0072 -0.1247 11 8 7.9684 5.3718 -0.2419 12 6 9.3009 5.6091 -0.3634 13 6 10.1980 4.5509 -0.3639 14 6 11.5517 4.7944 -0.4929 15 6 12.0136 6.0923 -0.6107 16 6 11.1220 7.1492 -0.6046 17 6 9.7670 6.9105 -0.4813 18 6 4.2494 0.0143 0.0005 19 6 3.6199 -1.1976 -0.0005 20 6 2.2069 -1.2212 -0.0005 21 6 1.5092 -2.4488 0.0048 22 1 0.5401 -2.5172 0.4767 23 6 2.0730 -3.5764 -0.6012 24 7 1.6214 -4.7701 -0.3108 25 14 3.4706 -3.3785 -1.8248 26 1 4.7691 -3.5530 -1.1257 27 1 3.3419 -4.4021 -2.8930 28 1 3.4118 -2.0230 -2.4286 29 1 -0.3633 -0.0005 1.0277 30 1 -0.3634 0.8901 -0.5134 31 1 -0.3633 -0.8899 -0.5141 32 1 3.6056 3.2306 0.0006 33 1 5.9756 1.9780 0.8908 34 1 5.9755 1.9788 -0.8892 35 1 6.0022 4.1497 2.0149 36 1 8.0182 3.5659 0.7607 37 1 7.8770 3.4561 -1.0104 38 1 9.8380 3.5372 -0.2681 39 1 12.2501 3.9706 -0.4979 40 1 13.0726 6.2809 -0.7072 41 1 11.4853 8.1621 -0.6964 42 1 9.0711 7.7364 -0.4762 43 1 5.3282 0.0670 0.0005 44 1 4.1883 -2.1160 -0.0001 45 1 2.0121 -5.5520 -0.7313 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155941992.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:12:29 Heat of formation + Delta-G solvation = -31.633914 kcal Electronic energy + Delta-G solvation = -26267.151473 eV Core-core repulsion = 22442.519430 eV Total energy + Delta-G solvation = -3824.632042 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.49777 -39.11816 -38.33990 -37.10267 -35.06840 -33.52279 -31.71526 -31.57405 -31.22612 -30.44145 -29.38690 -27.19587 -26.00994 -23.89914 -23.16689 -22.46043 -21.97570 -21.51885 -20.08267 -18.57428 -17.54158 -17.21197 -16.90231 -16.72394 -16.25874 -15.57748 -15.36422 -15.16630 -15.09889 -14.77620 -14.00142 -13.87356 -13.73891 -13.63559 -13.42363 -13.09356 -12.98852 -12.77460 -12.62211 -12.48754 -11.94946 -11.87886 -11.60328 -11.48011 -11.36108 -11.29381 -11.15681 -10.98342 -10.74845 -10.36952 -10.34653 -9.83901 -9.49056 -9.36668 -8.86734 -8.54576 -8.41469 -8.20526 -6.92775 -6.88605 -4.31662 0.97802 1.10084 2.43198 2.67827 2.69775 3.06134 3.16700 3.28259 3.44205 3.83455 3.95945 4.12722 4.40687 4.51129 4.54511 4.56797 4.66533 4.69176 4.77824 4.90674 5.02919 5.10965 5.16937 5.31238 5.38499 5.51333 5.64522 5.72880 5.80357 5.95330 6.01555 6.05108 6.17845 6.19735 6.24979 6.41166 6.59944 6.68235 6.75686 6.95387 7.06395 7.08868 7.22648 7.39003 7.50827 7.64447 8.04251 8.26569 8.38489 8.62530 8.79487 9.46588 10.11715 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.019821 B = 0.002178 C = 0.001996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.315752 B =12850.210179 C =14022.835098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.065 3.935 3 N -0.509 5.509 4 C 0.282 3.718 5 N -0.737 5.737 6 C 0.117 3.883 7 C 0.103 3.897 8 H 0.115 0.885 9 O -0.546 6.546 10 C 0.030 3.970 11 O -0.303 6.303 12 C 0.131 3.869 13 C -0.211 4.211 14 C -0.080 4.080 15 C -0.162 4.162 16 C -0.082 4.082 17 C -0.153 4.153 18 C -0.189 4.189 19 C -0.165 4.165 20 C 0.014 3.986 21 C -0.439 4.439 22 H 0.094 0.906 23 C 0.083 3.917 24 N -0.814 5.814 25 Si 0.904 3.096 26 H -0.272 1.272 27 H -0.290 1.290 28 H -0.248 1.248 29 H 0.053 0.947 30 H 0.051 0.949 31 H 0.074 0.926 32 H 0.397 0.603 33 H 0.057 0.943 34 H 0.061 0.939 35 H 0.376 0.624 36 H 0.069 0.931 37 H 0.075 0.925 38 H 0.128 0.872 39 H 0.124 0.876 40 H 0.122 0.878 41 H 0.128 0.872 42 H 0.131 0.869 43 H 0.100 0.900 44 H 0.109 0.891 45 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.950 16.418 -0.776 24.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.077 4.077 3 N -0.224 5.224 4 C 0.051 3.949 5 N -0.377 5.377 6 C -0.010 4.010 7 C 0.043 3.957 8 H 0.133 0.867 9 O -0.351 6.351 10 C -0.046 4.046 11 O -0.216 6.216 12 C 0.086 3.914 13 C -0.230 4.230 14 C -0.098 4.098 15 C -0.181 4.181 16 C -0.100 4.100 17 C -0.172 4.172 18 C -0.213 4.213 19 C -0.191 4.191 20 C 0.009 3.991 21 C -0.470 4.470 22 H 0.112 0.888 23 C -0.135 4.135 24 N -0.439 5.439 25 Si 0.731 3.269 26 H -0.199 1.199 27 H -0.217 1.217 28 H -0.171 1.171 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.093 0.907 32 H 0.232 0.768 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.223 0.777 36 H 0.087 0.913 37 H 0.093 0.907 38 H 0.146 0.854 39 H 0.142 0.858 40 H 0.140 0.860 41 H 0.146 0.854 42 H 0.149 0.851 43 H 0.118 0.882 44 H 0.126 0.874 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 17.114 17.330 -1.190 24.386 hybrid contribution 1.605 -1.377 -0.176 2.122 sum 18.719 15.953 -1.366 24.633 Atomic orbital electron populations 1.20331 0.90428 1.01615 1.00917 1.20852 0.95099 0.86892 1.04853 1.66375 1.07353 1.31244 1.17467 1.17585 0.88166 0.84815 1.04289 1.43364 1.02823 1.05270 1.86231 1.21537 0.83387 0.94504 1.01594 1.22106 0.90608 0.93596 0.89414 0.86735 1.86658 1.74261 1.59052 1.15106 1.23525 0.96755 0.81903 1.02419 1.86138 1.20193 1.27807 1.87465 1.19097 0.82696 0.94136 0.95517 1.21316 0.94259 0.98609 1.08814 1.20977 0.94746 0.97103 0.97006 1.21077 0.99844 0.92719 1.04422 1.20988 0.92159 0.99350 0.97460 1.20487 0.96008 0.94493 1.06189 1.20635 0.98196 0.92618 1.09895 1.20964 0.94873 0.96116 1.07195 1.18317 0.91590 0.94281 0.94937 1.19223 1.05461 0.90805 1.31469 0.88777 1.26069 0.96684 0.94379 0.96329 1.69718 1.39058 0.99018 1.36112 0.86421 0.80578 0.79548 0.80331 1.19867 1.21690 1.17144 0.92816 0.93016 0.90742 0.76848 0.92486 0.92053 0.77690 0.91256 0.90669 0.85428 0.85784 0.85956 0.85383 0.85138 0.88213 0.87363 0.90658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.55 9.59 36.01 0.35 -1.20 16 2 C 0.06 1.54 6.86 -81.79 -0.56 0.98 16 3 N -0.51 -11.78 10.29 -8.04 -0.08 -11.86 16 4 C 0.28 5.96 7.64 -155.13 -1.19 4.77 16 5 N -0.74 -12.20 5.65 -60.36 -0.34 -12.55 16 6 C 0.12 1.41 4.51 -4.05 -0.02 1.39 16 7 C 0.10 1.05 3.28 -26.73 -0.09 0.96 16 8 H 0.11 1.25 8.14 -51.93 -0.42 0.83 16 9 O -0.55 -6.17 13.25 -40.08 -0.53 -6.70 16 10 C 0.03 0.26 4.37 37.16 0.16 0.43 16 11 O -0.30 -3.31 10.10 -24.27 -0.25 -3.55 16 12 C 0.13 1.34 6.69 -39.22 -0.26 1.07 16 13 C -0.21 -1.87 9.04 -39.43 -0.36 -2.23 16 14 C -0.08 -0.63 10.04 -39.61 -0.40 -1.03 16 15 C -0.16 -1.20 10.04 -39.56 -0.40 -1.60 16 16 C -0.08 -0.62 10.04 -39.60 -0.40 -1.02 16 17 C -0.15 -1.41 9.99 -39.43 -0.39 -1.81 16 18 C -0.19 -4.02 9.24 -39.64 -0.37 -4.39 16 19 C -0.17 -3.92 7.22 -39.01 -0.28 -4.20 16 20 C 0.01 0.36 5.10 -106.65 -0.54 -0.18 16 21 C -0.44 -11.56 8.53 -37.84 -0.32 -11.88 16 22 H 0.09 2.56 7.24 -52.48 -0.38 2.18 16 23 C 0.08 2.14 5.42 -17.34 -0.09 2.04 16 24 N -0.81 -21.39 13.93 55.54 0.77 -20.62 16 25 Si 0.90 20.44 24.53 -169.99 -4.17 16.27 16 26 H -0.27 -5.92 6.71 56.52 0.38 -5.55 16 27 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 28 H -0.25 -5.82 6.85 56.52 0.39 -5.43 16 29 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 30 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.07 1.53 6.86 -51.93 -0.36 1.18 16 32 H 0.40 6.49 8.59 -40.82 -0.35 6.14 16 33 H 0.06 0.66 7.90 -51.93 -0.41 0.25 16 34 H 0.06 0.72 7.90 -51.93 -0.41 0.31 16 35 H 0.38 3.07 9.05 45.56 0.41 3.49 16 36 H 0.07 0.50 7.65 -51.93 -0.40 0.11 16 37 H 0.08 0.57 7.67 -51.92 -0.40 0.17 16 38 H 0.13 0.95 6.30 -52.49 -0.33 0.62 16 39 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 40 H 0.12 0.64 8.06 -52.49 -0.42 0.22 16 41 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 42 H 0.13 1.09 8.06 -52.49 -0.42 0.66 16 43 H 0.10 1.80 6.64 -52.48 -0.35 1.45 16 44 H 0.11 2.53 4.83 -52.49 -0.25 2.28 16 45 H 0.28 6.78 8.30 -40.82 -0.34 6.44 16 LS Contribution 371.60 15.07 5.60 5.60 Total: -1.00 -30.70 371.60 -9.51 -40.21 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: -5.35 Total: 11.08 kcal Atomic # 6 Polarization: -12.73 SS G_CDS: -5.16 Total: -17.88 kcal Atomic # 7 Polarization: -45.37 SS G_CDS: 0.35 Total: -45.02 kcal Atomic # 8 Polarization: -9.48 SS G_CDS: -0.78 Total: -10.25 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -4.17 Total: 16.27 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -30.70 -9.51 -40.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155941992.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.573 kcal (2) G-P(sol) polarization free energy of solvation -30.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds