Wall clock time and date at job start Tue Mar 31 2020 15:12:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31487 * 119.81410 * 2 1 4 4 C 1.32743 * 121.73059 * 179.97438 * 3 2 1 5 5 N 1.38369 * 119.42890 * 180.02562 * 4 3 2 6 6 C 1.46497 * 119.99822 * 180.02562 * 5 4 3 7 7 C 1.52995 * 109.47295 * 179.97438 * 6 5 4 8 8 H 1.09002 * 109.47363 * 305.00244 * 7 6 5 9 9 O 1.42904 * 109.47361 * 64.99681 * 7 6 5 10 10 C 1.52997 * 109.47611 * 184.99860 * 7 6 5 11 11 O 1.42904 * 109.47417 * 174.99979 * 10 7 6 12 12 C 1.35896 * 116.99754 * 180.02562 * 11 10 7 13 13 C 1.38731 * 120.05996 * 359.72060 * 12 11 10 14 14 C 1.38146 * 119.94583 * 179.74434 * 13 12 11 15 15 C 1.38262 * 120.05170 * 0.51291 * 14 13 12 16 16 C 1.38268 * 120.11541 * 359.76658 * 15 14 13 17 17 C 1.38145 * 120.05411 * 359.97438 * 16 15 14 18 18 C 1.39704 * 121.13606 * 0.02562 * 4 3 2 19 19 C 1.36564 * 119.49962 * 0.02562 * 18 4 3 20 20 C 1.40753 * 119.81789 * 180.02562 * 2 1 3 21 21 C 1.41206 * 120.56979 * 359.72364 * 20 2 1 22 22 H 1.08003 * 120.00071 * 329.99345 * 21 20 2 23 23 C 1.39874 * 120.00054 * 149.99155 * 21 20 2 24 24 N 1.30897 * 119.99753 * 162.22512 * 23 21 20 25 25 Si 1.86802 * 119.99746 * 342.23130 * 23 21 20 26 26 H 1.48496 * 109.47524 * 95.38239 * 25 23 21 27 27 H 1.48504 * 109.46780 * 215.38533 * 25 23 21 28 28 H 1.48499 * 109.47245 * 335.37754 * 25 23 21 29 29 H 1.09003 * 109.46643 * 269.97336 * 1 2 3 30 30 H 1.08993 * 109.47369 * 29.97787 * 1 2 3 31 31 H 1.09006 * 109.46784 * 149.98208 * 1 2 3 32 32 H 0.97001 * 119.99633 * 359.97438 * 5 4 3 33 33 H 1.09003 * 109.47242 * 299.99856 * 6 5 4 34 34 H 1.09004 * 109.47134 * 59.99949 * 6 5 4 35 35 H 0.96703 * 113.99468 * 59.99778 * 9 7 6 36 36 H 1.09002 * 109.47002 * 295.00374 * 10 7 6 37 37 H 1.09009 * 109.46832 * 55.00008 * 10 7 6 38 38 H 1.08000 * 120.02364 * 0.02562 * 13 12 11 39 39 H 1.08001 * 119.97443 * 180.27848 * 14 13 12 40 40 H 1.08001 * 119.94185 * 179.73933 * 15 14 13 41 41 H 1.07998 * 119.97498 * 179.97438 * 16 15 14 42 42 H 1.07997 * 120.02400 * 179.97438 * 17 16 15 43 43 H 1.08007 * 120.25197 * 179.97438 * 18 4 3 44 44 H 1.08001 * 120.79650 * 180.02562 * 19 18 4 45 45 H 0.96999 * 119.99728 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1608 1.1408 0.0000 4 6 3.4875 1.1852 0.0005 5 7 4.1266 2.4124 0.0010 6 6 5.5902 2.4760 0.0010 7 6 6.0372 3.9392 0.0010 8 1 5.5796 4.4589 -0.8408 9 8 5.6318 4.5612 1.2220 10 6 7.5605 4.0072 -0.1247 11 8 7.9684 5.3718 -0.2419 12 6 9.3009 5.6091 -0.3634 13 6 10.1980 4.5509 -0.3639 14 6 11.5517 4.7944 -0.4929 15 6 12.0136 6.0923 -0.6107 16 6 11.1220 7.1492 -0.6046 17 6 9.7670 6.9105 -0.4813 18 6 4.2494 0.0143 0.0005 19 6 3.6199 -1.1976 -0.0005 20 6 2.2069 -1.2212 -0.0005 21 6 1.5092 -2.4488 0.0048 22 1 0.5401 -2.5172 0.4767 23 6 2.0730 -3.5764 -0.6012 24 7 1.6214 -4.7701 -0.3108 25 14 3.4706 -3.3785 -1.8248 26 1 4.7691 -3.5530 -1.1257 27 1 3.3419 -4.4021 -2.8930 28 1 3.4118 -2.0230 -2.4286 29 1 -0.3633 -0.0005 1.0277 30 1 -0.3634 0.8901 -0.5134 31 1 -0.3633 -0.8899 -0.5141 32 1 3.6056 3.2306 0.0006 33 1 5.9756 1.9780 0.8908 34 1 5.9755 1.9788 -0.8892 35 1 6.0022 4.1497 2.0149 36 1 8.0182 3.5659 0.7607 37 1 7.8770 3.4561 -1.0104 38 1 9.8380 3.5372 -0.2681 39 1 12.2501 3.9706 -0.4979 40 1 13.0726 6.2809 -0.7072 41 1 11.4853 8.1621 -0.6964 42 1 9.0711 7.7364 -0.4762 43 1 5.3282 0.0670 0.0005 44 1 4.1883 -2.1160 -0.0001 45 1 2.0121 -5.5520 -0.7313 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155941992.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:12:28 Heat of formation + Delta-G solvation = -52.214030 kcal Electronic energy + Delta-G solvation = -26268.043893 eV Core-core repulsion = 22442.519430 eV Total energy + Delta-G solvation = -3825.524463 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.17469 -40.74481 -39.20886 -37.90739 -36.50389 -35.24745 -33.37584 -32.82307 -32.03110 -31.38386 -30.28887 -28.93806 -27.10226 -25.50600 -23.94383 -23.56949 -23.15314 -22.44132 -21.67720 -19.37728 -19.25244 -18.38378 -17.98846 -17.62372 -16.98800 -16.86419 -16.83302 -16.26158 -16.03721 -15.52202 -15.44275 -15.21564 -14.88515 -14.78901 -14.55672 -14.32900 -14.18248 -14.04743 -13.82117 -13.61410 -13.42320 -13.35743 -12.91553 -12.82992 -12.53668 -12.48426 -12.21040 -12.08115 -11.98765 -11.71956 -11.65344 -11.32039 -11.17883 -10.52522 -10.14421 -9.98655 -9.95419 -9.17698 -8.80092 -8.56754 -6.22841 0.39184 0.49043 0.64810 0.88287 1.25469 1.38995 1.48442 1.91930 2.13668 2.64348 2.70515 2.84824 3.37427 3.54335 3.67659 3.77496 3.89099 3.93684 4.01781 4.04041 4.24412 4.27216 4.31077 4.32435 4.50222 4.52260 4.54379 4.57589 4.63671 4.75351 4.91966 4.95455 4.99429 5.02562 5.08812 5.19491 5.35527 5.36304 5.48455 5.49605 5.60850 5.75528 5.82485 5.85900 6.31361 6.42052 6.51500 6.58035 6.72207 6.86734 6.99814 7.71844 8.28386 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.019821 B = 0.002178 C = 0.001996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.315752 B =12850.210179 C =14022.835098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.053 3.947 3 N -0.530 5.530 4 C 0.298 3.702 5 N -0.729 5.729 6 C 0.111 3.889 7 C 0.114 3.886 8 H 0.105 0.895 9 O -0.564 6.564 10 C 0.033 3.967 11 O -0.324 6.324 12 C 0.108 3.892 13 C -0.220 4.220 14 C -0.088 4.088 15 C -0.166 4.166 16 C -0.085 4.085 17 C -0.173 4.173 18 C -0.196 4.196 19 C -0.166 4.166 20 C -0.016 4.016 21 C -0.466 4.466 22 H 0.065 0.935 23 C 0.045 3.955 24 N -0.856 5.856 25 Si 0.956 3.044 26 H -0.255 1.255 27 H -0.280 1.280 28 H -0.261 1.261 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.399 0.601 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.389 0.611 36 H 0.086 0.914 37 H 0.088 0.912 38 H 0.140 0.860 39 H 0.145 0.855 40 H 0.145 0.855 41 H 0.150 0.850 42 H 0.130 0.870 43 H 0.139 0.861 44 H 0.111 0.889 45 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.292 18.042 -1.187 27.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.087 4.087 3 N -0.247 5.247 4 C 0.065 3.935 5 N -0.367 5.367 6 C -0.014 4.014 7 C 0.055 3.945 8 H 0.123 0.877 9 O -0.372 6.372 10 C -0.043 4.043 11 O -0.238 6.238 12 C 0.063 3.937 13 C -0.239 4.239 14 C -0.106 4.106 15 C -0.184 4.184 16 C -0.103 4.103 17 C -0.191 4.191 18 C -0.220 4.220 19 C -0.193 4.193 20 C -0.021 4.021 21 C -0.497 4.497 22 H 0.083 0.917 23 C -0.168 4.168 24 N -0.484 5.484 25 Si 0.781 3.219 26 H -0.180 1.180 27 H -0.207 1.207 28 H -0.186 1.186 29 H 0.080 0.920 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.234 0.766 33 H 0.092 0.908 34 H 0.093 0.907 35 H 0.238 0.762 36 H 0.105 0.895 37 H 0.106 0.894 38 H 0.158 0.842 39 H 0.163 0.837 40 H 0.163 0.837 41 H 0.168 0.832 42 H 0.148 0.852 43 H 0.157 0.843 44 H 0.129 0.871 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 20.481 18.977 -1.586 27.967 hybrid contribution 0.686 -1.570 0.014 1.713 sum 21.167 17.407 -1.572 27.450 Atomic orbital electron populations 1.20311 0.89007 1.01934 1.01563 1.21257 0.96493 0.86892 1.04048 1.66518 1.08465 1.30742 1.18956 1.18065 0.87912 0.86592 1.00926 1.43587 1.04833 1.03715 1.84587 1.21816 0.80472 0.96199 1.02888 1.21912 0.91725 0.92032 0.88866 0.87672 1.86632 1.74803 1.59686 1.16034 1.23511 0.95414 0.81509 1.03879 1.86083 1.20902 1.28864 1.87941 1.19332 0.82585 0.94917 0.96848 1.21526 0.94637 0.98885 1.08828 1.21323 0.94787 0.98092 0.96376 1.21440 1.01051 0.92530 1.03374 1.21303 0.91569 1.00746 0.96635 1.20711 0.96950 0.94479 1.07002 1.20960 1.00240 0.91523 1.09302 1.21159 0.94394 0.97373 1.06356 1.18452 0.92636 0.94235 0.96786 1.19138 1.05033 0.92190 1.33349 0.91665 1.26673 0.98763 0.93929 0.97386 1.69752 1.41052 0.99673 1.37885 0.85625 0.78938 0.78723 0.78648 1.17997 1.20665 1.18567 0.91966 0.91351 0.91612 0.76645 0.90850 0.90706 0.76184 0.89545 0.89355 0.84212 0.83739 0.83698 0.83214 0.85233 0.84330 0.87141 0.89985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.94 9.59 71.24 0.68 -2.26 16 2 C 0.05 2.53 6.86 43.23 0.30 2.83 16 3 N -0.53 -23.87 10.29 -179.36 -1.85 -25.72 16 4 C 0.30 11.88 7.64 133.31 1.02 12.90 16 5 N -0.73 -21.98 5.65 -344.87 -1.95 -23.93 16 6 C 0.11 2.28 4.51 86.38 0.39 2.67 16 7 C 0.11 2.03 3.28 30.59 0.10 2.13 16 8 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 9 O -0.56 -11.48 13.25 -144.34 -1.91 -13.40 16 10 C 0.03 0.48 4.37 71.98 0.31 0.79 16 11 O -0.32 -6.59 10.10 -87.74 -0.89 -7.48 16 12 C 0.11 2.05 6.69 22.51 0.15 2.20 16 13 C -0.22 -3.41 9.04 22.37 0.20 -3.21 16 14 C -0.09 -1.14 10.04 22.25 0.22 -0.92 16 15 C -0.17 -2.01 10.04 22.28 0.22 -1.79 16 16 C -0.08 -1.13 10.04 22.25 0.22 -0.90 16 17 C -0.17 -3.01 9.99 22.37 0.22 -2.79 16 18 C -0.20 -7.76 9.24 22.23 0.21 -7.55 16 19 C -0.17 -7.67 7.22 22.64 0.16 -7.51 16 20 C -0.02 -0.79 5.10 -21.18 -0.11 -0.90 16 21 C -0.47 -25.46 8.53 23.40 0.20 -25.26 16 22 H 0.07 3.79 7.24 -2.91 -0.02 3.77 16 23 C 0.05 2.40 5.42 85.23 0.46 2.86 16 24 N -0.86 -46.45 13.93 21.82 0.30 -46.14 16 25 Si 0.96 41.96 24.53 68.60 1.68 43.64 16 26 H -0.25 -10.33 6.71 99.48 0.67 -9.66 16 27 H -0.28 -11.69 7.11 99.48 0.71 -10.99 16 28 H -0.26 -11.91 6.85 99.48 0.68 -11.22 16 29 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 30 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 31 H 0.07 2.82 6.86 -2.38 -0.02 2.80 16 32 H 0.40 12.06 8.59 -92.71 -0.80 11.27 16 33 H 0.07 1.34 7.90 -2.39 -0.02 1.33 16 34 H 0.07 1.42 7.90 -2.38 -0.02 1.40 16 35 H 0.39 5.37 9.05 -74.06 -0.67 4.70 16 36 H 0.09 0.96 7.65 -2.39 -0.02 0.94 16 37 H 0.09 1.06 7.67 -2.38 -0.02 1.04 16 38 H 0.14 1.68 6.30 -2.91 -0.02 1.66 16 39 H 0.14 1.20 8.06 -2.91 -0.02 1.17 16 40 H 0.15 1.03 8.06 -2.91 -0.02 1.01 16 41 H 0.15 1.20 8.06 -2.91 -0.02 1.18 16 42 H 0.13 2.12 8.06 -2.91 -0.02 2.10 16 43 H 0.14 4.34 6.64 -2.91 -0.02 4.32 16 44 H 0.11 4.98 4.83 -2.91 -0.01 4.97 16 45 H 0.29 14.22 8.30 -92.71 -0.77 13.45 16 Total: -1.00 -67.35 371.60 -0.13 -67.49 By element: Atomic # 1 Polarization: 32.74 SS G_CDS: -0.50 Total: 32.24 kcal Atomic # 6 Polarization: -31.68 SS G_CDS: 4.97 Total: -26.71 kcal Atomic # 7 Polarization: -92.30 SS G_CDS: -3.49 Total: -95.79 kcal Atomic # 8 Polarization: -18.08 SS G_CDS: -2.80 Total: -20.87 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 1.68 Total: 43.64 kcal Total: -67.35 -0.13 -67.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155941992.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.271 kcal (2) G-P(sol) polarization free energy of solvation -67.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds