Wall clock time and date at job start Tue Mar 31 2020 15:12:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38676 * 119.27979 * 2 1 4 4 C 1.38013 * 119.62815 * 180.02562 * 3 2 1 5 5 C 1.40997 * 118.27918 * 359.97438 * 4 3 2 6 6 C 1.41023 * 120.70084 * 180.02562 * 5 4 3 7 7 H 1.08002 * 119.99363 * 204.88149 * 6 5 4 8 8 C 1.39935 * 120.00317 * 24.88406 * 6 5 4 9 9 N 1.30875 * 120.00360 * 14.52304 * 8 6 5 10 10 Si 1.86799 * 120.00222 * 194.52049 * 8 6 5 11 11 H 1.48499 * 109.47026 * 359.97438 * 10 8 6 12 12 H 1.48501 * 109.47551 * 120.00100 * 10 8 6 13 13 H 1.48501 * 109.47267 * 240.00322 * 10 8 6 14 14 C 1.41703 * 118.59003 * 359.97438 * 5 4 3 15 15 N 1.38097 * 119.90366 * 179.97438 * 14 5 4 16 16 C 1.46506 * 119.99684 * 180.02562 * 15 14 5 17 17 H 1.08997 * 109.46906 * 324.99792 * 16 15 14 18 18 C 1.52994 * 109.47098 * 85.00263 * 16 15 14 19 19 C 1.52999 * 109.46738 * 204.99941 * 16 15 14 20 20 H 1.09003 * 109.47321 * 55.00167 * 19 16 15 21 21 O 1.42896 * 109.47466 * 295.00202 * 19 16 15 22 22 C 1.50703 * 109.46952 * 174.99688 * 19 16 15 23 23 C 1.38287 * 119.96647 * 84.72942 * 22 19 16 24 24 C 1.38247 * 120.10776 * 179.72513 * 23 22 19 25 25 C 1.38165 * 120.05868 * 0.54665 * 24 23 22 26 26 C 1.38719 * 119.94049 * 359.72626 * 25 24 23 27 27 O 1.35898 * 120.05368 * 179.97438 * 26 25 24 28 28 C 1.38123 * 119.97447 * 264.99940 * 22 19 16 29 29 N 1.31975 * 119.27258 * 179.72778 * 2 1 3 30 30 H 1.08993 * 109.47207 * 89.99532 * 1 2 3 31 31 H 1.09001 * 109.46807 * 329.99787 * 1 2 3 32 32 H 1.08996 * 109.47147 * 210.00359 * 1 2 3 33 33 H 1.08006 * 120.18772 * 0.02562 * 3 2 1 34 34 H 1.07994 * 120.85830 * 180.02562 * 4 3 2 35 35 H 0.96994 * 120.00525 * 180.02562 * 9 8 6 36 36 H 0.96991 * 120.00061 * 0.02562 * 15 14 5 37 37 H 1.08997 * 109.47627 * 59.99970 * 18 16 15 38 38 H 1.09006 * 109.47129 * 180.02562 * 18 16 15 39 39 H 1.09002 * 109.47535 * 299.99423 * 18 16 15 40 40 H 0.96702 * 113.99844 * 299.99702 * 21 19 16 41 41 H 1.07999 * 119.94791 * 359.97438 * 23 22 19 42 42 H 1.07999 * 119.97247 * 180.25479 * 24 23 22 43 43 H 1.07994 * 120.03484 * 179.70351 * 25 24 23 44 44 H 0.96704 * 113.99808 * 270.01872 * 27 26 25 45 45 H 1.08000 * 120.02439 * 0.02562 * 28 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1852 1.2096 0.0000 4 6 3.5653 1.2180 -0.0005 5 6 4.2409 -0.0196 -0.0005 6 6 5.6502 -0.0706 -0.0005 7 1 6.1590 -0.9382 -0.3940 8 6 6.3892 1.0027 0.5094 9 7 5.7990 1.9169 1.2365 10 14 8.2183 1.1306 0.1523 11 1 8.6408 -0.0204 -0.6854 12 1 8.4940 2.3978 -0.5713 13 1 8.9744 1.1159 1.4304 14 6 3.4736 -1.2110 0.0006 15 7 4.1073 -2.4380 0.0001 16 6 3.3160 -3.6710 0.0007 17 1 2.4118 -3.5221 0.5909 18 6 2.9338 -4.0323 -1.4360 19 6 4.1414 -4.8062 0.6097 20 1 4.4887 -4.5121 1.6002 21 8 5.2666 -5.0794 -0.2277 22 6 3.2877 -6.0429 0.7234 23 6 3.1538 -6.8918 -0.3599 24 6 2.3760 -8.0301 -0.2571 25 6 1.7211 -8.3162 0.9254 26 6 1.8493 -7.4632 2.0118 27 8 1.2059 -7.7422 3.1758 28 6 2.6352 -6.3244 1.9078 29 7 2.1523 -1.1512 0.0055 30 1 -0.3633 0.0001 -1.0276 31 1 -0.3633 0.8900 0.5139 32 1 -0.3633 -0.8899 0.5139 33 1 1.6365 2.1399 0.0004 34 1 4.1136 2.1484 -0.0001 35 1 6.3112 2.6610 1.5897 36 1 5.0761 -2.4834 -0.0006 37 1 3.8380 -4.1812 -2.0261 38 1 2.3447 -4.9495 -1.4355 39 1 2.3457 -3.2236 -1.8699 40 1 5.0319 -5.3478 -1.1266 41 1 3.6610 -6.6674 -1.2866 42 1 2.2762 -8.6937 -1.1032 43 1 1.1097 -9.2030 1.0038 44 1 0.3178 -7.3639 3.2348 45 1 2.7363 -5.6585 2.7521 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001159589358.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:12:40 Heat of formation + Delta-G solvation = -40.864576 kcal Electronic energy + Delta-G solvation = -27749.538644 eV Core-core repulsion = 23924.506330 eV Total energy + Delta-G solvation = -3825.032314 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.26906 -38.80243 -38.04390 -36.31159 -34.61450 -34.09837 -32.01262 -31.01523 -30.36293 -29.74896 -28.59876 -27.37350 -26.40299 -23.99859 -22.83320 -22.27752 -21.15571 -20.68909 -19.89362 -18.43035 -17.27323 -17.16607 -16.44731 -16.08273 -16.03868 -15.41872 -15.17323 -14.80224 -14.51137 -14.08342 -13.81087 -13.77773 -13.58031 -13.29637 -12.72077 -12.49033 -12.39655 -12.25689 -11.94194 -11.89250 -11.78815 -11.59014 -11.47870 -11.38642 -11.31702 -11.21650 -10.99489 -10.82339 -10.62382 -10.46512 -9.95115 -9.70914 -9.27162 -9.05133 -8.88412 -8.68366 -8.05180 -7.87005 -6.78254 -6.48222 -4.20617 1.06873 1.16270 2.71776 3.08310 3.10795 3.13456 3.23336 3.41631 3.94306 4.00991 4.19554 4.53485 4.68203 4.71907 4.77487 4.96050 5.04374 5.17662 5.26334 5.40248 5.60790 5.68341 5.70972 5.75825 5.78146 5.98665 6.05803 6.13224 6.20008 6.24510 6.35235 6.41012 6.42277 6.45861 6.56631 6.60721 6.67472 6.82543 6.96130 7.15362 7.23474 7.47370 7.61417 7.69111 7.80572 8.03069 8.30641 8.55987 8.68257 8.80956 9.01546 9.79333 10.22310 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.012569 B = 0.003518 C = 0.003030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2227.191001 B = 7956.821389 C = 9240.118139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.024 3.976 3 C -0.186 4.186 4 C -0.123 4.123 5 C 0.029 3.971 6 C -0.452 4.452 7 H 0.076 0.924 8 C 0.074 3.926 9 N -0.800 5.800 10 Si 0.907 3.093 11 H -0.261 1.261 12 H -0.274 1.274 13 H -0.276 1.276 14 C 0.308 3.692 15 N -0.720 5.720 16 C 0.143 3.857 17 H 0.087 0.913 18 C -0.169 4.169 19 C 0.136 3.864 20 H 0.113 0.887 21 O -0.550 6.550 22 C -0.084 4.084 23 C -0.118 4.118 24 C -0.103 4.103 25 C -0.149 4.149 26 C 0.105 3.895 27 O -0.501 6.501 28 C -0.133 4.133 29 N -0.528 5.528 30 H 0.048 0.952 31 H 0.051 0.949 32 H 0.052 0.948 33 H 0.093 0.907 34 H 0.128 0.872 35 H 0.278 0.722 36 H 0.407 0.593 37 H 0.049 0.951 38 H 0.056 0.944 39 H 0.067 0.933 40 H 0.371 0.629 41 H 0.124 0.876 42 H 0.126 0.874 43 H 0.126 0.874 44 H 0.391 0.609 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.123 -14.073 -2.043 15.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.110 4.110 3 C -0.209 4.209 4 C -0.150 4.150 5 C 0.022 3.978 6 C -0.484 4.484 7 H 0.094 0.906 8 C -0.142 4.142 9 N -0.427 5.427 10 Si 0.732 3.268 11 H -0.185 1.185 12 H -0.199 1.199 13 H -0.201 1.201 14 C 0.071 3.929 15 N -0.360 5.360 16 C 0.036 3.964 17 H 0.105 0.895 18 C -0.228 4.228 19 C 0.076 3.924 20 H 0.131 0.869 21 O -0.356 6.356 22 C -0.086 4.086 23 C -0.136 4.136 24 C -0.121 4.121 25 C -0.168 4.168 26 C 0.061 3.939 27 O -0.311 6.311 28 C -0.151 4.151 29 N -0.246 5.246 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.111 0.889 34 H 0.145 0.855 35 H 0.089 0.911 36 H 0.244 0.756 37 H 0.068 0.932 38 H 0.074 0.926 39 H 0.086 0.914 40 H 0.220 0.780 41 H 0.142 0.858 42 H 0.144 0.856 43 H 0.144 0.856 44 H 0.247 0.753 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -5.879 -14.824 -1.216 15.994 hybrid contribution 0.856 1.087 -0.588 1.504 sum -5.023 -13.737 -1.804 14.737 Atomic orbital electron populations 1.20275 0.91932 1.00663 1.00207 1.19936 0.94194 0.88060 1.08817 1.21227 0.95395 0.96604 1.07631 1.21406 0.92074 0.98362 1.03122 1.17920 0.93896 0.90067 0.95872 1.19203 0.90805 1.02611 1.35772 0.90626 1.25804 1.00811 0.94867 0.92754 1.69809 1.38189 1.10444 1.24266 0.86279 0.82263 0.79250 0.79047 1.18451 1.19897 1.20115 1.18403 0.87918 0.85481 1.01121 1.43692 1.07562 1.00526 1.84179 1.21027 0.94949 0.84438 0.96004 0.89523 1.22313 1.00982 1.01673 0.97843 1.21261 0.85512 0.89951 0.95674 0.86945 1.86636 1.32304 1.90326 1.26335 1.20390 0.97693 0.96975 0.93498 1.20936 0.99498 0.94786 0.98364 1.20972 0.96816 0.96980 0.97308 1.21397 1.02055 1.00635 0.92685 1.18426 0.96260 0.93740 0.85459 1.84814 1.33436 1.77552 1.35303 1.21295 0.98954 0.96847 0.98035 1.66320 1.08315 1.29714 1.20248 0.93338 0.92972 0.92894 0.88887 0.85481 0.91082 0.75571 0.93200 0.92562 0.91377 0.78033 0.85777 0.85557 0.85603 0.75346 0.85116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.31 10.15 36.01 0.37 -0.95 16 2 C 0.02 0.55 6.79 -82.37 -0.56 -0.01 16 3 C -0.19 -4.39 9.69 -39.50 -0.38 -4.77 16 4 C -0.12 -3.18 8.79 -38.62 -0.34 -3.52 16 5 C 0.03 0.76 5.60 -106.47 -0.60 0.17 16 6 C -0.45 -11.50 8.54 -37.89 -0.32 -11.83 16 7 H 0.08 1.83 6.67 -52.49 -0.35 1.48 16 8 C 0.07 1.82 5.23 -17.32 -0.09 1.73 16 9 N -0.80 -20.44 10.83 55.55 0.60 -19.83 16 10 Si 0.91 18.54 29.58 -169.99 -5.03 13.51 16 11 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 12 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 13 H -0.28 -5.61 7.11 56.52 0.40 -5.20 16 14 C 0.31 7.36 7.49 -155.02 -1.16 6.20 16 15 N -0.72 -14.47 5.11 -53.49 -0.27 -14.74 16 16 C 0.14 2.33 2.44 -67.93 -0.17 2.16 16 17 H 0.09 1.57 7.53 -51.93 -0.39 1.18 16 18 C -0.17 -2.45 8.39 37.15 0.31 -2.14 16 19 C 0.14 1.90 3.16 -27.88 -0.09 1.81 16 20 H 0.11 1.68 8.05 -51.93 -0.42 1.26 16 21 O -0.55 -7.59 12.77 -35.23 -0.45 -8.04 16 22 C -0.08 -1.04 4.73 -104.64 -0.49 -1.54 16 23 C -0.12 -1.25 7.38 -39.56 -0.29 -1.54 16 24 C -0.10 -0.98 10.04 -39.61 -0.40 -1.38 16 25 C -0.15 -1.50 9.99 -39.43 -0.39 -1.90 16 26 C 0.11 1.20 6.71 -39.21 -0.26 0.94 16 27 O -0.50 -5.14 13.50 -19.42 -0.26 -5.40 16 28 C -0.13 -1.64 9.62 -39.43 -0.38 -2.02 16 29 N -0.53 -12.32 9.07 -8.11 -0.07 -12.39 16 30 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.05 0.84 8.07 -51.93 -0.42 0.42 16 32 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.09 1.96 8.06 -52.48 -0.42 1.54 16 34 H 0.13 3.38 6.17 -52.49 -0.32 3.06 16 35 H 0.28 6.51 8.30 -40.82 -0.34 6.17 16 36 H 0.41 8.25 6.58 -40.82 -0.27 7.98 16 37 H 0.05 0.65 6.72 -51.93 -0.35 0.31 16 38 H 0.06 0.69 5.91 -51.93 -0.31 0.38 16 39 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 40 H 0.37 4.02 5.54 45.56 0.25 4.28 16 41 H 0.12 1.10 6.15 -52.49 -0.32 0.77 16 42 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 43 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 44 H 0.39 2.19 9.06 45.56 0.41 2.60 16 45 H 0.13 1.58 8.06 -52.49 -0.42 1.15 16 LS Contribution 368.32 15.07 5.55 5.55 Total: -1.00 -30.10 368.32 -9.76 -39.86 By element: Atomic # 1 Polarization: 24.65 SS G_CDS: -4.58 Total: 20.08 kcal Atomic # 6 Polarization: -13.33 SS G_CDS: -5.25 Total: -18.58 kcal Atomic # 7 Polarization: -47.23 SS G_CDS: 0.25 Total: -46.97 kcal Atomic # 8 Polarization: -12.73 SS G_CDS: -0.71 Total: -13.44 kcal Atomic # 14 Polarization: 18.54 SS G_CDS: -5.03 Total: 13.51 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -30.10 -9.76 -39.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001159589358.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.005 kcal (2) G-P(sol) polarization free energy of solvation -30.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds