Wall clock time and date at job start Tue Mar 31 2020 15:12:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38676 * 119.27979 * 2 1 4 4 C 1.38013 * 119.62815 * 180.02562 * 3 2 1 5 5 C 1.40997 * 118.27918 * 359.97438 * 4 3 2 6 6 C 1.41023 * 120.70084 * 180.02562 * 5 4 3 7 7 H 1.08002 * 119.99363 * 204.88149 * 6 5 4 8 8 C 1.39935 * 120.00317 * 24.88406 * 6 5 4 9 9 N 1.30875 * 120.00360 * 14.52304 * 8 6 5 10 10 Si 1.86799 * 120.00222 * 194.52049 * 8 6 5 11 11 H 1.48499 * 109.47026 * 359.97438 * 10 8 6 12 12 H 1.48501 * 109.47551 * 120.00100 * 10 8 6 13 13 H 1.48501 * 109.47267 * 240.00322 * 10 8 6 14 14 C 1.41703 * 118.59003 * 359.97438 * 5 4 3 15 15 N 1.38097 * 119.90366 * 179.97438 * 14 5 4 16 16 C 1.46506 * 119.99684 * 180.02562 * 15 14 5 17 17 H 1.08997 * 109.46906 * 324.99792 * 16 15 14 18 18 C 1.52994 * 109.47098 * 85.00263 * 16 15 14 19 19 C 1.52999 * 109.46738 * 204.99941 * 16 15 14 20 20 H 1.09003 * 109.47321 * 55.00167 * 19 16 15 21 21 O 1.42896 * 109.47466 * 295.00202 * 19 16 15 22 22 C 1.50703 * 109.46952 * 174.99688 * 19 16 15 23 23 C 1.38287 * 119.96647 * 84.72942 * 22 19 16 24 24 C 1.38247 * 120.10776 * 179.72513 * 23 22 19 25 25 C 1.38165 * 120.05868 * 0.54665 * 24 23 22 26 26 C 1.38719 * 119.94049 * 359.72626 * 25 24 23 27 27 O 1.35898 * 120.05368 * 179.97438 * 26 25 24 28 28 C 1.38123 * 119.97447 * 264.99940 * 22 19 16 29 29 N 1.31975 * 119.27258 * 179.72778 * 2 1 3 30 30 H 1.08993 * 109.47207 * 89.99532 * 1 2 3 31 31 H 1.09001 * 109.46807 * 329.99787 * 1 2 3 32 32 H 1.08996 * 109.47147 * 210.00359 * 1 2 3 33 33 H 1.08006 * 120.18772 * 0.02562 * 3 2 1 34 34 H 1.07994 * 120.85830 * 180.02562 * 4 3 2 35 35 H 0.96994 * 120.00525 * 180.02562 * 9 8 6 36 36 H 0.96991 * 120.00061 * 0.02562 * 15 14 5 37 37 H 1.08997 * 109.47627 * 59.99970 * 18 16 15 38 38 H 1.09006 * 109.47129 * 180.02562 * 18 16 15 39 39 H 1.09002 * 109.47535 * 299.99423 * 18 16 15 40 40 H 0.96702 * 113.99844 * 299.99702 * 21 19 16 41 41 H 1.07999 * 119.94791 * 359.97438 * 23 22 19 42 42 H 1.07999 * 119.97247 * 180.25479 * 24 23 22 43 43 H 1.07994 * 120.03484 * 179.70351 * 25 24 23 44 44 H 0.96704 * 113.99808 * 270.01872 * 27 26 25 45 45 H 1.08000 * 120.02439 * 0.02562 * 28 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1852 1.2096 0.0000 4 6 3.5653 1.2180 -0.0005 5 6 4.2409 -0.0196 -0.0005 6 6 5.6502 -0.0706 -0.0005 7 1 6.1590 -0.9382 -0.3940 8 6 6.3892 1.0027 0.5094 9 7 5.7990 1.9169 1.2365 10 14 8.2183 1.1306 0.1523 11 1 8.6408 -0.0204 -0.6854 12 1 8.4940 2.3978 -0.5713 13 1 8.9744 1.1159 1.4304 14 6 3.4736 -1.2110 0.0006 15 7 4.1073 -2.4380 0.0001 16 6 3.3160 -3.6710 0.0007 17 1 2.4118 -3.5221 0.5909 18 6 2.9338 -4.0323 -1.4360 19 6 4.1414 -4.8062 0.6097 20 1 4.4887 -4.5121 1.6002 21 8 5.2666 -5.0794 -0.2277 22 6 3.2877 -6.0429 0.7234 23 6 3.1538 -6.8918 -0.3599 24 6 2.3760 -8.0301 -0.2571 25 6 1.7211 -8.3162 0.9254 26 6 1.8493 -7.4632 2.0118 27 8 1.2059 -7.7422 3.1758 28 6 2.6352 -6.3244 1.9078 29 7 2.1523 -1.1512 0.0055 30 1 -0.3633 0.0001 -1.0276 31 1 -0.3633 0.8900 0.5139 32 1 -0.3633 -0.8899 0.5139 33 1 1.6365 2.1399 0.0004 34 1 4.1136 2.1484 -0.0001 35 1 6.3112 2.6610 1.5897 36 1 5.0761 -2.4834 -0.0006 37 1 3.8380 -4.1812 -2.0261 38 1 2.3447 -4.9495 -1.4355 39 1 2.3457 -3.2236 -1.8699 40 1 5.0319 -5.3478 -1.1266 41 1 3.6610 -6.6674 -1.2866 42 1 2.2762 -8.6937 -1.1032 43 1 1.1097 -9.2030 1.0038 44 1 0.3178 -7.3639 3.2348 45 1 2.7363 -5.6585 2.7521 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001159589358.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:12:38 Heat of formation + Delta-G solvation = -60.862937 kcal Electronic energy + Delta-G solvation = -27750.405838 eV Core-core repulsion = 23924.506330 eV Total energy + Delta-G solvation = -3825.899508 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.23422 -40.39579 -39.21028 -37.23363 -36.11506 -35.88243 -33.25458 -32.50756 -31.85335 -30.77042 -30.01168 -29.09197 -27.50745 -25.73102 -23.84397 -23.39060 -22.64016 -22.31616 -21.29971 -19.32357 -19.11776 -18.31541 -17.79948 -17.27514 -17.06409 -16.93266 -16.37211 -15.99813 -15.67385 -15.56142 -15.35884 -15.03003 -14.95867 -14.51223 -14.27682 -13.94936 -13.63847 -13.46707 -13.28630 -13.17358 -13.11984 -13.02235 -12.92288 -12.78424 -12.56722 -12.55220 -12.33795 -12.25457 -12.12097 -11.63697 -11.54299 -11.10294 -10.99510 -10.61754 -9.92727 -9.82042 -9.74609 -9.54196 -8.61696 -8.26563 -6.11163 0.24484 0.33437 0.92303 1.24650 1.40140 1.50849 1.53933 2.22911 2.53445 2.78742 2.84956 3.22149 3.52550 3.67794 3.79574 3.87422 3.91569 4.15209 4.16261 4.20905 4.33507 4.43698 4.53065 4.57238 4.71703 4.74780 4.84225 4.89691 4.94681 4.98943 4.99705 5.04996 5.12595 5.23265 5.28513 5.36916 5.42113 5.44231 5.46368 5.56244 5.84268 5.87486 5.92830 6.16258 6.44680 6.67074 6.80237 6.83280 6.87775 6.94481 7.18442 7.96200 8.40909 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.012569 B = 0.003518 C = 0.003030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2227.191001 B = 7956.821389 C = 9240.118139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.022 3.978 3 C -0.203 4.203 4 C -0.145 4.145 5 C -0.007 4.007 6 C -0.477 4.477 7 H 0.078 0.922 8 C 0.033 3.967 9 N -0.835 5.835 10 Si 0.978 3.022 11 H -0.256 1.256 12 H -0.269 1.269 13 H -0.271 1.271 14 C 0.305 3.695 15 N -0.717 5.717 16 C 0.145 3.855 17 H 0.066 0.934 18 C -0.158 4.158 19 C 0.150 3.850 20 H 0.094 0.906 21 O -0.558 6.558 22 C -0.096 4.096 23 C -0.122 4.122 24 C -0.097 4.097 25 C -0.149 4.149 26 C 0.098 3.902 27 O -0.512 6.512 28 C -0.154 4.154 29 N -0.535 5.535 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.059 0.941 33 H 0.114 0.886 34 H 0.110 0.890 35 H 0.284 0.716 36 H 0.404 0.596 37 H 0.065 0.935 38 H 0.083 0.917 39 H 0.039 0.961 40 H 0.385 0.615 41 H 0.144 0.856 42 H 0.158 0.842 43 H 0.147 0.853 44 H 0.409 0.591 45 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.769 -16.316 -3.190 17.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.112 4.112 3 C -0.225 4.225 4 C -0.172 4.172 5 C -0.014 4.014 6 C -0.509 4.509 7 H 0.096 0.904 8 C -0.180 4.180 9 N -0.463 5.463 10 Si 0.800 3.200 11 H -0.180 1.180 12 H -0.194 1.194 13 H -0.197 1.197 14 C 0.067 3.933 15 N -0.355 5.355 16 C 0.039 3.961 17 H 0.084 0.916 18 C -0.216 4.216 19 C 0.090 3.910 20 H 0.112 0.888 21 O -0.367 6.367 22 C -0.097 4.097 23 C -0.140 4.140 24 C -0.115 4.115 25 C -0.167 4.167 26 C 0.054 3.946 27 O -0.325 6.325 28 C -0.173 4.173 29 N -0.254 5.254 30 H 0.085 0.915 31 H 0.091 0.909 32 H 0.078 0.922 33 H 0.132 0.868 34 H 0.128 0.872 35 H 0.094 0.906 36 H 0.241 0.759 37 H 0.083 0.917 38 H 0.101 0.899 39 H 0.058 0.942 40 H 0.236 0.764 41 H 0.162 0.838 42 H 0.176 0.824 43 H 0.165 0.835 44 H 0.268 0.732 45 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -6.552 -17.101 -2.371 18.466 hybrid contribution 0.907 1.692 -0.199 1.930 sum -5.645 -15.409 -2.570 16.611 Atomic orbital electron populations 1.20329 0.88317 1.02058 1.01820 1.20776 0.96678 0.87526 1.06223 1.21470 0.94766 0.98112 1.08146 1.21418 0.93252 0.97913 1.04607 1.18258 0.94731 0.90981 0.97394 1.19403 0.91067 1.03515 1.36906 0.90399 1.26617 1.05149 0.94202 0.92078 1.69880 1.40009 1.11173 1.25216 0.85204 0.76639 0.79287 0.78871 1.17987 1.19368 1.19652 1.18670 0.88291 0.86388 0.99987 1.43821 1.07678 1.00777 1.83186 1.21161 0.94076 0.83630 0.97272 0.91567 1.22186 1.01605 1.01716 0.96123 1.20914 0.85397 0.90061 0.94613 0.88793 1.86616 1.32328 1.90363 1.27351 1.20206 0.98279 0.96796 0.94451 1.21194 0.99644 0.94777 0.98400 1.21349 0.95393 0.96679 0.98037 1.21704 1.01907 1.00828 0.92297 1.18554 0.96285 0.93615 0.86170 1.84760 1.34848 1.77747 1.35165 1.21355 1.00131 0.97702 0.98079 1.66516 1.07929 1.30000 1.20930 0.91463 0.90901 0.92176 0.86797 0.87216 0.90590 0.75903 0.91656 0.89869 0.94205 0.76437 0.83843 0.82392 0.83480 0.73183 0.86192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.30 10.15 71.24 0.72 -1.57 16 2 C 0.02 1.01 6.79 42.64 0.29 1.30 16 3 C -0.20 -9.68 9.69 22.32 0.22 -9.46 16 4 C -0.15 -7.81 8.79 22.89 0.20 -7.61 16 5 C -0.01 -0.36 5.60 -21.06 -0.12 -0.48 16 6 C -0.48 -25.14 8.54 23.36 0.20 -24.94 16 7 H 0.08 3.90 6.67 -2.91 -0.02 3.88 16 8 C 0.03 1.64 5.23 85.25 0.45 2.09 16 9 N -0.84 -44.18 10.83 21.83 0.24 -43.95 16 10 Si 0.98 38.70 29.58 68.60 2.03 40.72 16 11 H -0.26 -9.84 7.11 99.48 0.71 -9.13 16 12 H -0.27 -10.32 7.11 99.48 0.71 -9.61 16 13 H -0.27 -10.46 7.11 99.48 0.71 -9.75 16 14 C 0.31 14.98 7.49 134.05 1.00 15.98 16 15 N -0.72 -29.49 5.11 -323.14 -1.65 -31.14 16 16 C 0.14 4.72 2.44 44.99 0.11 4.83 16 17 H 0.07 2.45 7.53 -2.39 -0.02 2.43 16 18 C -0.16 -4.37 8.39 71.98 0.60 -3.77 16 19 C 0.15 4.18 3.16 29.85 0.09 4.28 16 20 H 0.09 2.94 8.05 -2.39 -0.02 2.92 16 21 O -0.56 -14.83 12.77 -148.98 -1.90 -16.74 16 22 C -0.10 -2.28 4.73 -19.88 -0.09 -2.37 16 23 C -0.12 -2.25 7.38 22.28 0.16 -2.09 16 24 C -0.10 -1.50 10.04 22.25 0.22 -1.28 16 25 C -0.15 -2.57 9.99 22.37 0.22 -2.34 16 26 C 0.10 2.09 6.71 22.51 0.15 2.24 16 27 O -0.51 -9.88 13.50 -92.40 -1.25 -11.13 16 28 C -0.15 -3.77 9.62 22.37 0.22 -3.55 16 29 N -0.53 -25.22 9.07 -179.57 -1.63 -26.85 16 30 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 31 H 0.07 2.17 8.07 -2.39 -0.02 2.15 16 32 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.11 4.80 8.06 -2.91 -0.02 4.77 16 34 H 0.11 6.16 6.17 -2.91 -0.02 6.15 16 35 H 0.28 13.68 8.30 -92.71 -0.77 12.91 16 36 H 0.40 16.85 6.58 -92.71 -0.61 16.24 16 37 H 0.06 1.59 6.72 -2.39 -0.02 1.58 16 38 H 0.08 1.85 5.91 -2.38 -0.01 1.83 16 39 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.38 7.51 5.54 -74.06 -0.41 7.10 16 41 H 0.14 2.01 6.15 -2.91 -0.02 1.99 16 42 H 0.16 1.45 8.06 -2.91 -0.02 1.42 16 43 H 0.15 1.87 8.06 -2.91 -0.02 1.85 16 44 H 0.41 4.07 9.06 -74.05 -0.67 3.40 16 45 H 0.12 3.05 8.06 -2.91 -0.02 3.02 16 Total: -1.00 -67.22 368.32 -0.14 -67.37 By element: Atomic # 1 Polarization: 51.09 SS G_CDS: -0.63 Total: 50.45 kcal Atomic # 6 Polarization: -33.40 SS G_CDS: 4.65 Total: -28.74 kcal Atomic # 7 Polarization: -98.89 SS G_CDS: -3.04 Total: -101.94 kcal Atomic # 8 Polarization: -24.71 SS G_CDS: -3.15 Total: -27.86 kcal Atomic # 14 Polarization: 38.70 SS G_CDS: 2.03 Total: 40.72 kcal Total: -67.22 -0.14 -67.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001159589358.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.502 kcal (2) G-P(sol) polarization free energy of solvation -67.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds