Wall clock time and date at job start Tue Mar 31 2020 15:27:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35960 * 117.00112 * 2 1 4 4 C 1.39417 * 119.82165 * 0.02562 * 3 2 1 5 5 C 1.38096 * 120.57150 * 179.72216 * 4 3 2 6 6 C 1.38720 * 120.19889 * 0.50761 * 5 4 3 7 7 N 1.38853 * 120.18154 * 179.76742 * 6 5 4 8 8 C 1.46502 * 119.99685 * 359.72644 * 7 6 5 9 9 C 1.50700 * 109.46960 * 179.97438 * 8 7 6 10 10 C 1.38428 * 120.44363 * 90.00036 * 9 8 7 11 11 C 1.50700 * 120.75322 * 359.95664 * 10 9 8 12 12 C 1.38788 * 118.48401 * 180.23142 * 10 9 8 13 13 C 1.38083 * 119.28910 * 359.47633 * 12 10 9 14 14 C 1.50700 * 119.58825 * 180.25144 * 13 12 10 15 15 N 1.31939 * 120.83366 * 0.53761 * 13 12 10 16 16 C 1.32281 * 121.64441 * 359.73820 * 15 13 12 17 17 O 1.35684 * 119.68150 * 179.97438 * 16 15 13 18 18 C 1.41547 * 119.63679 * 359.49877 * 6 5 4 19 19 C 1.41028 * 120.27257 * 180.26969 * 18 6 5 20 20 H 1.07994 * 120.00169 * 334.25236 * 19 18 6 21 21 C 1.39908 * 119.99393 * 154.24478 * 19 18 6 22 22 N 1.30889 * 120.00425 * 342.95739 * 21 19 18 23 23 Si 1.86801 * 119.99647 * 162.95138 * 21 19 18 24 24 H 1.48503 * 109.47075 * 94.64266 * 23 21 19 25 25 H 1.48495 * 109.47317 * 214.64347 * 23 21 19 26 26 H 1.48499 * 109.47434 * 334.64529 * 23 21 19 27 27 C 1.37837 * 119.82086 * 179.97438 * 3 2 1 28 28 H 1.08993 * 109.47065 * 300.00318 * 1 2 3 29 29 H 1.09000 * 109.46812 * 60.00200 * 1 2 3 30 30 H 1.08995 * 109.47006 * 179.97438 * 1 2 3 31 31 H 1.08001 * 119.71114 * 359.97264 * 4 3 2 32 32 H 1.07994 * 119.90151 * 180.25736 * 5 4 3 33 33 H 0.96999 * 120.00456 * 179.72531 * 7 6 5 34 34 H 1.08994 * 109.47291 * 59.99790 * 8 7 6 35 35 H 1.09004 * 109.47370 * 299.99410 * 8 7 6 36 36 H 1.08999 * 109.47264 * 90.00377 * 11 10 9 37 37 H 1.08998 * 109.47366 * 329.99602 * 11 10 9 38 38 H 1.09004 * 109.46935 * 209.99852 * 11 10 9 39 39 H 1.08002 * 120.35120 * 179.74957 * 12 10 9 40 40 H 1.09002 * 109.47071 * 270.28400 * 14 13 12 41 41 H 1.08998 * 109.46555 * 30.28253 * 14 13 12 42 42 H 1.09003 * 109.47431 * 150.27504 * 14 13 12 43 43 H 0.96694 * 114.00080 * 269.97956 * 17 16 15 44 44 H 0.97001 * 120.00102 * 179.97438 * 22 21 19 45 45 H 1.08005 * 120.10686 * 0.05020 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.2834 2.3783 0.0005 5 6 1.8942 3.6168 0.0063 6 6 3.2781 3.7124 0.0010 7 7 3.8918 4.9579 0.0020 8 6 3.0775 6.1757 0.0025 9 6 3.9794 7.3830 0.0041 10 6 4.3999 7.9460 -1.1886 11 6 3.9670 7.3649 -2.5099 12 6 5.2339 9.0543 -1.1396 13 6 5.6075 9.5649 0.0878 14 6 6.5083 10.7715 0.1487 15 7 5.1903 9.0063 1.2079 16 6 4.3994 7.9460 1.2021 17 8 3.9946 7.4033 2.3779 18 6 4.0611 2.5332 0.0004 19 6 5.4690 2.6147 0.0008 20 1 5.9595 3.4872 -0.4048 21 6 6.2302 1.5653 0.5269 22 7 5.6691 0.6767 1.3071 23 14 8.0475 1.4322 0.1155 24 1 8.8459 2.0859 1.1834 25 1 8.4294 0.0005 0.0180 26 1 8.3119 2.1045 -1.1819 27 6 3.4230 1.2792 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 0.2053 2.3130 0.0005 32 1 1.2927 4.5137 0.0109 33 1 4.8597 5.0217 0.0023 34 1 2.4481 6.1916 0.8922 35 1 2.4487 6.1928 -0.8877 36 1 3.0389 7.8393 -2.8289 37 1 3.8078 6.2922 -2.4004 38 1 4.7412 7.5429 -3.2562 39 1 5.5833 9.5150 -2.0518 40 1 7.5489 10.4476 0.1636 41 1 6.3353 11.3985 -0.7259 42 1 6.2920 11.3411 1.0526 43 1 4.5851 6.7176 2.7185 44 1 6.1968 -0.0511 1.6714 45 1 4.0101 0.3727 0.0001 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162606010.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:27:29 Heat of formation + Delta-G solvation = -25.521049 kcal Electronic energy + Delta-G solvation = -27631.413136 eV Core-core repulsion = 23807.046167 eV Total energy + Delta-G solvation = -3824.366969 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.73228 -38.67100 -37.22004 -37.01256 -35.23323 -33.64858 -32.87569 -31.69226 -29.78980 -29.15477 -27.81306 -27.47032 -25.76649 -25.10218 -24.27714 -22.59670 -21.20714 -20.44319 -19.91835 -18.24030 -17.63393 -17.15551 -16.53519 -15.92959 -15.62924 -15.20048 -14.96795 -14.69641 -14.59215 -14.21621 -13.98905 -13.71923 -13.32165 -13.30011 -13.05027 -12.95369 -12.55433 -12.44996 -12.21472 -12.14630 -11.90155 -11.71168 -11.50772 -11.49187 -11.31075 -11.25807 -11.13338 -10.99145 -10.54831 -10.19616 -10.01620 -9.48388 -9.39388 -9.34036 -9.11033 -8.67471 -8.37879 -7.41007 -6.74030 -6.00100 -4.20456 0.94896 1.17029 2.78886 3.08603 3.11146 3.17197 3.23600 3.39984 3.77060 3.94912 4.43412 4.48564 4.55812 4.65867 4.71480 4.90430 4.97323 5.21688 5.29966 5.35709 5.42027 5.54580 5.56487 5.65857 5.75714 5.77603 5.82747 5.86981 5.98100 5.98754 6.08907 6.11153 6.20031 6.38527 6.39339 6.55665 6.87641 6.97962 7.16278 7.44848 7.53031 7.58399 7.63885 7.89982 7.94984 8.05963 8.24299 8.58607 8.77830 8.85652 8.95475 9.11678 10.25288 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.010616 B = 0.003947 C = 0.003205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2636.996092 B = 7092.434378 C = 8732.910281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.332 6.332 3 C 0.094 3.906 4 C -0.277 4.277 5 C -0.146 4.146 6 C 0.093 3.907 7 N -0.744 5.744 8 C 0.184 3.816 9 C -0.167 4.167 10 C -0.007 4.007 11 C -0.124 4.124 12 C -0.190 4.190 13 C 0.150 3.850 14 C -0.103 4.103 15 N -0.512 5.512 16 C 0.336 3.664 17 O -0.479 6.479 18 C 0.100 3.900 19 C -0.462 4.462 20 H 0.073 0.927 21 C 0.078 3.922 22 N -0.789 5.789 23 Si 0.901 3.099 24 H -0.273 1.273 25 H -0.276 1.276 26 H -0.262 1.262 27 C -0.172 4.172 28 H 0.042 0.958 29 H 0.042 0.958 30 H 0.080 0.920 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.393 0.607 34 H 0.062 0.938 35 H 0.056 0.944 36 H 0.077 0.923 37 H 0.086 0.914 38 H 0.072 0.928 39 H 0.136 0.864 40 H 0.079 0.921 41 H 0.075 0.925 42 H 0.076 0.924 43 H 0.406 0.594 44 H 0.279 0.721 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.776 12.359 -4.641 13.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.246 6.246 3 C 0.050 3.950 4 C -0.298 4.298 5 C -0.170 4.170 6 C -0.005 4.005 7 N -0.380 5.380 8 C 0.058 3.942 9 C -0.171 4.171 10 C -0.015 4.015 11 C -0.180 4.180 12 C -0.210 4.210 13 C 0.012 3.988 14 C -0.160 4.160 15 N -0.232 5.232 16 C 0.157 3.843 17 O -0.287 6.287 18 C 0.096 3.904 19 C -0.493 4.493 20 H 0.091 0.909 21 C -0.140 4.140 22 N -0.415 5.415 23 Si 0.725 3.275 24 H -0.198 1.198 25 H -0.201 1.201 26 H -0.186 1.186 27 C -0.193 4.193 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.098 0.902 31 H 0.110 0.890 32 H 0.108 0.892 33 H 0.228 0.772 34 H 0.080 0.920 35 H 0.074 0.926 36 H 0.096 0.904 37 H 0.105 0.895 38 H 0.090 0.910 39 H 0.154 0.846 40 H 0.097 0.903 41 H 0.094 0.906 42 H 0.095 0.905 43 H 0.265 0.735 44 H 0.090 0.910 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -1.032 12.739 -3.712 13.309 hybrid contribution 0.953 -0.598 -0.610 1.279 sum -0.079 12.141 -4.322 12.888 Atomic orbital electron populations 1.22698 0.81221 1.01550 1.00274 1.85998 1.19068 1.29180 1.90380 1.18813 0.92402 0.82385 1.01450 1.20180 0.96953 0.92151 1.20475 1.19762 0.92221 0.95694 1.09305 1.17793 0.90990 0.84849 1.06866 1.43836 1.07065 1.00861 1.86283 1.19739 0.91866 0.81359 1.01227 1.20936 1.03639 1.00055 0.92472 1.20189 0.92933 0.92963 0.95402 1.20930 1.01739 1.02769 0.92559 1.21802 1.01726 0.98582 0.98934 1.20960 0.94708 0.95657 0.87428 1.20724 0.98083 0.93769 1.03444 1.67005 1.12730 1.11323 1.32183 1.18955 0.90505 0.89458 0.85379 1.84688 1.50707 1.57236 1.36044 1.16925 0.92680 0.88487 0.92334 1.19084 0.90801 1.03235 1.36140 0.90926 1.25780 1.00528 0.94822 0.92830 1.69860 1.38134 1.11556 1.21947 0.86430 0.82693 0.78478 0.79868 1.19832 1.20062 1.18640 1.20292 0.89255 0.98554 1.11214 0.93902 0.93985 0.90196 0.88954 0.89165 0.77188 0.91979 0.92614 0.90421 0.89486 0.90957 0.84649 0.90283 0.90632 0.90477 0.73518 0.90988 0.85710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.64 9.81 101.05 0.99 1.64 16 2 O -0.33 -7.48 10.49 -19.62 -0.21 -7.68 16 3 C 0.09 2.30 6.67 -39.29 -0.26 2.03 16 4 C -0.28 -6.24 9.03 -39.19 -0.35 -6.59 16 5 C -0.15 -3.21 9.28 -39.46 -0.37 -3.58 16 6 C 0.09 2.12 6.68 -83.24 -0.56 1.57 16 7 N -0.74 -14.18 5.63 -59.35 -0.33 -14.52 16 8 C 0.18 2.96 4.06 -5.19 -0.02 2.94 16 9 C -0.17 -2.48 5.28 -104.32 -0.55 -3.03 16 10 C -0.01 -0.09 5.91 -104.35 -0.62 -0.70 16 11 C -0.12 -1.36 9.28 36.01 0.33 -1.03 16 12 C -0.19 -2.19 9.44 -39.43 -0.37 -2.56 16 13 C 0.15 1.87 6.78 -82.60 -0.56 1.31 16 14 C -0.10 -0.90 10.17 36.01 0.37 -0.53 16 15 N -0.51 -7.77 10.30 -9.55 -0.10 -7.87 16 16 C 0.34 5.24 7.72 -17.12 -0.13 5.11 16 17 O -0.48 -7.33 12.62 -18.75 -0.24 -7.57 16 18 C 0.10 2.56 5.58 -106.65 -0.59 1.97 16 19 C -0.46 -11.59 8.49 -37.90 -0.32 -11.91 16 20 H 0.07 1.72 6.69 -52.49 -0.35 1.37 16 21 C 0.08 1.92 5.14 -17.33 -0.09 1.83 16 22 N -0.79 -20.41 10.99 55.55 0.61 -19.80 16 23 Si 0.90 18.45 29.59 -169.99 -5.03 13.42 16 24 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 25 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 26 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 27 C -0.17 -4.55 8.60 -38.80 -0.33 -4.89 16 28 H 0.04 0.68 7.65 -51.93 -0.40 0.29 16 29 H 0.04 0.65 7.65 -51.93 -0.40 0.26 16 30 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.09 1.85 6.26 -52.49 -0.33 1.52 16 32 H 0.09 1.78 6.70 -52.49 -0.35 1.42 16 33 H 0.39 7.63 6.68 -40.82 -0.27 7.35 16 34 H 0.06 1.07 7.34 -51.93 -0.38 0.68 16 35 H 0.06 0.86 6.62 -51.93 -0.34 0.52 16 36 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.09 1.14 6.82 -51.93 -0.35 0.78 16 38 H 0.07 0.67 8.10 -51.93 -0.42 0.25 16 39 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 40 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.07 0.48 8.08 -51.93 -0.42 0.06 16 42 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.41 5.06 9.06 45.56 0.41 5.47 16 44 H 0.28 6.64 8.30 -40.82 -0.34 6.30 16 45 H 0.13 3.50 6.22 -52.48 -0.33 3.18 16 LS Contribution 371.66 15.07 5.60 5.60 Total: -1.00 -30.16 371.66 -8.31 -38.47 By element: Atomic # 1 Polarization: 21.55 SS G_CDS: -5.18 Total: 16.38 kcal Atomic # 6 Polarization: -12.99 SS G_CDS: -3.44 Total: -16.43 kcal Atomic # 7 Polarization: -42.37 SS G_CDS: 0.18 Total: -42.19 kcal Atomic # 8 Polarization: -14.81 SS G_CDS: -0.44 Total: -15.26 kcal Atomic # 14 Polarization: 18.45 SS G_CDS: -5.03 Total: 13.42 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -30.16 -8.31 -38.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162606010.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.953 kcal (2) G-P(sol) polarization free energy of solvation -30.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds