Wall clock time and date at job start Tue Mar 31 2020 15:16:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36822 * 119.99837 * 2 1 4 4 H 1.07999 * 120.00349 * 197.67428 * 3 2 1 5 5 C 1.39080 * 119.99879 * 17.67697 * 3 2 1 6 6 N 1.31351 * 120.00080 * 18.95039 * 5 3 2 7 7 Si 1.86798 * 120.00009 * 198.95154 * 5 3 2 8 8 H 1.48509 * 109.46982 * 0.02562 * 7 5 3 9 9 H 1.48496 * 109.47275 * 119.99790 * 7 5 3 10 10 H 1.48500 * 109.47235 * 240.00207 * 7 5 3 11 11 C 1.34768 * 120.00477 * 180.02562 * 2 1 3 12 12 O 1.21659 * 120.00287 * 179.86595 * 11 2 1 13 13 C 1.46957 * 119.99929 * 359.86289 * 11 2 1 14 14 C 1.32616 * 125.11793 * 190.17241 * 13 11 2 15 15 C 1.50606 * 109.76460 * 179.97438 * 14 13 11 16 16 C 1.52999 * 109.87910 * 119.41908 * 15 14 13 17 17 C 1.52999 * 109.87887 * 240.42464 * 15 14 13 18 18 N 1.46907 * 107.28791 * 0.02562 * 15 14 13 19 19 C 1.34773 * 127.05388 * 180.02562 * 18 15 14 20 20 O 1.21551 * 120.00008 * 3.07255 * 19 18 15 21 21 C 1.47848 * 119.99833 * 183.07212 * 19 18 15 22 22 C 1.39572 * 120.14747 * 352.02853 * 21 19 18 23 23 C 1.37952 * 119.85621 * 179.78883 * 22 21 19 24 24 C 1.38362 * 120.14541 * 0.49725 * 23 22 21 25 25 C 1.38367 * 120.28701 * 359.73815 * 24 23 22 26 26 C 1.37956 * 120.14607 * 0.02562 * 25 24 23 27 27 C 1.46904 * 105.89146 * 359.77063 * 18 15 14 28 28 H 1.09008 * 109.47191 * 263.37843 * 1 2 3 29 29 H 1.09000 * 109.47519 * 23.37784 * 1 2 3 30 30 H 1.09001 * 109.47212 * 143.38241 * 1 2 3 31 31 H 0.97002 * 119.99689 * 180.02562 * 6 5 3 32 32 H 1.07994 * 125.12045 * 359.97438 * 14 13 11 33 33 H 1.09004 * 109.46868 * 61.45477 * 16 15 14 34 34 H 1.09000 * 109.47053 * 181.45096 * 16 15 14 35 35 H 1.08997 * 109.47236 * 301.45669 * 16 15 14 36 36 H 1.09002 * 109.46899 * 58.54713 * 17 15 14 37 37 H 1.09000 * 109.47037 * 178.54604 * 17 15 14 38 38 H 1.08996 * 109.47223 * 298.54805 * 17 15 14 39 39 H 1.08004 * 120.07332 * 0.02562 * 22 21 19 40 40 H 1.08002 * 119.92969 * 180.23308 * 23 22 21 41 41 H 1.07997 * 119.85811 * 179.71667 * 24 23 22 42 42 H 1.08003 * 119.92556 * 180.02562 * 25 24 23 43 43 H 1.08007 * 120.07158 * 179.97438 * 26 25 24 44 44 H 1.09000 * 109.99933 * 240.87111 * 27 18 15 45 45 H 1.08992 * 109.76065 * 119.71006 * 27 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1491 1.1849 0.0000 4 1 3.1908 1.2071 -0.2840 5 6 1.5029 2.3609 0.3657 6 7 0.3851 2.3095 1.0538 7 14 2.2245 4.0136 -0.1215 8 1 3.4788 3.7996 -0.8872 9 1 1.2495 4.7500 -0.9655 10 1 2.5186 4.8049 1.1002 11 6 2.1389 -1.1671 -0.0005 12 8 3.3555 -1.1670 -0.0030 13 6 1.4042 -2.4398 0.0020 14 6 1.9479 -3.6342 0.1933 15 6 0.8817 -4.6957 0.1265 16 6 1.1897 -5.6716 -1.0109 17 6 0.8151 -5.4505 1.4557 18 7 -0.3952 -4.0164 -0.1309 19 6 -1.6076 -4.5896 -0.2640 20 8 -1.7321 -5.7897 -0.1161 21 6 -2.7863 -3.7588 -0.5899 22 6 -2.6825 -2.3669 -0.5970 23 6 -3.7851 -1.5976 -0.9062 24 6 -4.9945 -2.2025 -1.1989 25 6 -5.1054 -3.5817 -1.1889 26 6 -4.0093 -4.3627 -0.8860 27 6 -0.0803 -2.5835 -0.2072 28 1 -0.3634 -0.1185 1.0209 29 1 -0.3634 0.9433 -0.4078 30 1 -0.3634 -0.8248 -0.6130 31 1 -0.0657 3.1297 1.3085 32 1 2.9973 -3.8179 0.3704 33 1 2.1442 -6.1623 -0.8201 34 1 0.4010 -6.4216 -1.0697 35 1 1.2435 -5.1262 -1.9530 36 1 0.6033 -4.7483 2.2620 37 1 0.0245 -6.1994 1.4090 38 1 1.7700 -5.9415 1.6430 39 1 -1.7401 -1.8933 -0.3646 40 1 -3.7051 -0.5206 -0.9157 41 1 -5.8558 -1.5956 -1.4359 42 1 -6.0522 -4.0478 -1.4186 43 1 -4.0973 -5.4392 -0.8781 44 1 -0.6180 -2.0417 0.5708 45 1 -0.3557 -2.1975 -1.1886 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001187660489.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:16:27 Heat of formation + Delta-G solvation = 23.325974 kcal Electronic energy + Delta-G solvation = -28794.996042 eV Core-core repulsion = 24972.747239 eV Total energy + Delta-G solvation = -3822.248803 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.39703 -40.53721 -39.67500 -38.55143 -36.88407 -34.77167 -33.82229 -33.00386 -31.93243 -31.48328 -29.01956 -28.30085 -27.36821 -26.48234 -25.25545 -23.78549 -23.50140 -21.84464 -20.61892 -19.70668 -19.10563 -18.29711 -17.72014 -17.20719 -17.13673 -16.85114 -16.44690 -16.06029 -15.80068 -15.47623 -15.38276 -14.96333 -14.86548 -14.69893 -14.61007 -14.31936 -14.12079 -13.75842 -13.57792 -13.46482 -13.26803 -13.16636 -13.04265 -12.85653 -12.56600 -12.48482 -12.39408 -12.32689 -12.10969 -11.95597 -11.57669 -11.04226 -11.00910 -10.72398 -10.54888 -9.97816 -9.94765 -9.83495 -9.54013 -8.44141 -5.96808 -0.14579 0.33590 0.42976 1.40003 1.43788 1.56821 1.63100 1.76793 2.23812 2.33157 2.87768 2.88981 3.06730 3.23558 3.28302 3.59477 3.89102 3.92428 4.01903 4.04905 4.10550 4.14619 4.22699 4.30435 4.38212 4.48184 4.53010 4.59444 4.66114 4.69878 4.82130 4.87491 4.90711 5.04253 5.06211 5.08612 5.23502 5.24760 5.30766 5.34111 5.41891 5.42997 5.48195 5.53304 5.96955 6.02618 6.31287 6.41082 6.95298 7.08164 7.35071 7.93735 8.58454 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.011445 B = 0.004564 C = 0.003384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2445.986313 B = 6133.715852 C = 8273.390829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.438 5.438 3 C -0.347 4.347 4 H 0.077 0.923 5 C 0.006 3.994 6 N -0.879 5.879 7 Si 0.988 3.012 8 H -0.274 1.274 9 H -0.261 1.261 10 H -0.275 1.275 11 C 0.474 3.526 12 O -0.634 6.634 13 C -0.179 4.179 14 C -0.087 4.087 15 C 0.181 3.819 16 C -0.144 4.144 17 C -0.146 4.146 18 N -0.606 5.606 19 C 0.582 3.418 20 O -0.559 6.559 21 C -0.154 4.154 22 C -0.129 4.129 23 C -0.131 4.131 24 C -0.088 4.088 25 C -0.126 4.126 26 C -0.072 4.072 27 C 0.134 3.866 28 H 0.047 0.953 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.279 0.721 32 H 0.159 0.841 33 H 0.091 0.909 34 H 0.065 0.935 35 H 0.053 0.947 36 H 0.049 0.951 37 H 0.067 0.933 38 H 0.091 0.909 39 H 0.147 0.853 40 H 0.145 0.855 41 H 0.158 0.842 42 H 0.158 0.842 43 H 0.133 0.867 44 H 0.101 0.899 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.571 -9.381 -4.037 16.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.153 5.153 3 C -0.475 4.475 4 H 0.095 0.905 5 C -0.198 4.198 6 N -0.516 5.516 7 Si 0.811 3.189 8 H -0.199 1.199 9 H -0.186 1.186 10 H -0.201 1.201 11 C 0.265 3.735 12 O -0.523 6.523 13 C -0.182 4.182 14 C -0.108 4.108 15 C 0.097 3.903 16 C -0.202 4.202 17 C -0.204 4.204 18 N -0.340 5.340 19 C 0.375 3.625 20 O -0.439 6.439 21 C -0.157 4.157 22 C -0.147 4.147 23 C -0.149 4.149 24 C -0.106 4.106 25 C -0.144 4.144 26 C -0.091 4.091 27 C 0.013 3.987 28 H 0.065 0.935 29 H 0.094 0.906 30 H 0.096 0.904 31 H 0.089 0.911 32 H 0.177 0.823 33 H 0.110 0.890 34 H 0.084 0.916 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.086 0.914 38 H 0.109 0.891 39 H 0.164 0.836 40 H 0.163 0.837 41 H 0.175 0.825 42 H 0.176 0.824 43 H 0.151 0.849 44 H 0.118 0.882 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -12.351 -9.869 -3.885 16.280 hybrid contribution 0.703 1.071 0.153 1.290 sum -11.649 -8.798 -3.732 15.067 Atomic orbital electron populations 1.22403 0.79466 1.02700 1.00760 1.43740 1.06926 1.04615 1.60019 1.19731 0.97309 0.84515 1.45948 0.90516 1.26050 0.96800 1.02595 0.94346 1.70067 1.18590 1.30530 1.32433 0.84963 0.78589 0.76935 0.78389 1.19884 1.18565 1.20096 1.17866 0.86858 0.83722 0.85021 1.90585 1.15035 1.87525 1.59199 1.21710 0.95610 0.94252 1.06670 1.23934 0.99871 0.91979 0.95013 1.19959 0.80717 0.92001 0.97637 1.22016 1.03411 0.98369 0.96401 1.22038 1.04029 1.00124 0.94205 1.48380 1.06862 1.07969 1.70740 1.18149 0.81352 0.86971 0.76059 1.90698 1.84950 1.15425 1.52796 1.19851 0.94091 0.93960 1.07836 1.22635 1.01655 0.92959 0.97450 1.21504 0.92734 1.01306 0.99316 1.21816 0.98141 0.95187 0.95438 1.21492 0.99041 0.94023 0.99842 1.21384 0.91170 1.00995 0.95529 1.21788 0.92429 0.82071 1.02453 0.93466 0.90591 0.90387 0.91080 0.82309 0.89031 0.91581 0.92787 0.93135 0.91415 0.89067 0.83622 0.83692 0.82453 0.82404 0.84925 0.88177 0.88187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.64 7.21 127.77 0.92 4.56 16 2 N -0.44 -21.97 3.02 -663.18 -2.00 -23.97 16 3 C -0.35 -19.07 9.34 84.12 0.79 -18.29 16 4 H 0.08 4.56 7.36 -2.91 -0.02 4.54 16 5 C 0.01 0.30 4.93 84.97 0.42 0.72 16 6 N -0.88 -43.35 10.80 21.69 0.23 -43.12 16 7 Si 0.99 39.97 29.59 68.60 2.03 42.00 16 8 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 9 H -0.26 -9.80 7.11 99.48 0.71 -9.10 16 10 H -0.28 -10.91 7.11 99.48 0.71 -10.20 16 11 C 0.47 23.47 7.59 86.53 0.66 24.13 16 12 O -0.63 -36.21 16.47 -4.22 -0.07 -36.28 16 13 C -0.18 -6.81 6.02 -18.77 -0.11 -6.93 16 14 C -0.09 -2.86 9.12 24.50 0.22 -2.64 16 15 C 0.18 5.20 0.94 2.75 0.00 5.21 16 16 C -0.14 -3.66 8.57 71.98 0.62 -3.05 16 17 C -0.15 -3.83 8.57 71.98 0.62 -3.21 16 18 N -0.61 -18.36 2.84 -785.41 -2.23 -20.59 16 19 C 0.58 17.94 7.45 86.79 0.65 18.59 16 20 O -0.56 -19.06 14.27 -3.88 -0.06 -19.12 16 21 C -0.15 -4.14 5.87 -20.09 -0.12 -4.26 16 22 C -0.13 -3.20 8.72 22.52 0.20 -3.00 16 23 C -0.13 -2.63 10.03 22.23 0.22 -2.41 16 24 C -0.09 -1.41 10.04 22.33 0.22 -1.19 16 25 C -0.13 -2.11 10.03 22.23 0.22 -1.89 16 26 C -0.07 -1.62 9.59 22.53 0.22 -1.41 16 27 C 0.13 4.21 2.96 85.53 0.25 4.47 16 28 H 0.05 1.96 7.54 -2.38 -0.02 1.94 16 29 H 0.08 3.26 6.31 -2.39 -0.02 3.25 16 30 H 0.08 2.60 2.65 -2.39 -0.01 2.59 16 31 H 0.28 12.71 8.31 -92.71 -0.77 11.94 16 32 H 0.16 5.06 8.06 -2.91 -0.02 5.04 16 33 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.07 1.78 7.02 -2.39 -0.02 1.76 16 35 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.07 1.89 6.83 -2.39 -0.02 1.87 16 38 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 39 H 0.15 3.79 1.81 -3.12 -0.01 3.78 16 40 H 0.15 2.48 8.06 -2.91 -0.02 2.46 16 41 H 0.16 1.52 8.06 -2.91 -0.02 1.50 16 42 H 0.16 1.63 8.06 -2.91 -0.02 1.61 16 43 H 0.13 2.94 7.67 -2.91 -0.02 2.91 16 44 H 0.10 3.12 4.82 -2.39 -0.01 3.11 16 45 H 0.10 2.96 5.76 -2.39 -0.01 2.95 16 Total: -1.00 -68.79 356.18 4.94 -63.85 By element: Atomic # 1 Polarization: 26.79 SS G_CDS: 1.03 Total: 27.82 kcal Atomic # 6 Polarization: 3.41 SS G_CDS: 5.99 Total: 9.41 kcal Atomic # 7 Polarization: -83.68 SS G_CDS: -3.99 Total: -87.68 kcal Atomic # 8 Polarization: -55.27 SS G_CDS: -0.12 Total: -55.40 kcal Atomic # 14 Polarization: 39.97 SS G_CDS: 2.03 Total: 42.00 kcal Total: -68.79 4.94 -63.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001187660489.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.178 kcal (2) G-P(sol) polarization free energy of solvation -68.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.852 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds