Wall clock time and date at job start Tue Mar 31 2020 15:39:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30011 * 127.33262 * 2 1 4 4 O 1.20663 * 112.31831 * 179.71877 * 3 2 1 5 5 C 1.33515 * 113.15761 * 0.49936 * 4 3 2 6 6 C 1.50700 * 126.83174 * 179.77791 * 5 4 3 7 7 C 1.52998 * 109.47431 * 299.68957 * 6 5 4 8 8 C 1.52998 * 109.47201 * 59.69480 * 6 5 4 9 9 C 1.37420 * 106.33124 * 359.52161 * 5 4 3 10 10 C 1.47318 * 128.57421 * 180.29086 * 9 5 4 11 11 O 1.21638 * 119.99998 * 85.70198 * 10 9 5 12 12 N 1.34778 * 119.99925 * 265.70405 * 10 9 5 13 13 C 1.36972 * 120.00356 * 5.48918 * 12 10 9 14 14 H 1.07996 * 119.99476 * 320.77900 * 13 12 10 15 15 C 1.38973 * 120.00412 * 140.77781 * 13 12 10 16 16 N 1.31407 * 120.00231 * 161.31072 * 15 13 12 17 17 Si 1.86807 * 119.99966 * 341.31492 * 15 13 12 18 18 H 1.48498 * 109.47146 * 95.26903 * 17 15 13 19 19 H 1.48493 * 109.47364 * 215.27069 * 17 15 13 20 20 H 1.48505 * 109.46823 * 335.26989 * 17 15 13 21 21 C 1.46504 * 119.99855 * 185.48703 * 12 10 9 22 22 C 1.50692 * 109.47149 * 90.00015 * 21 12 10 23 23 C 1.38243 * 119.99848 * 269.72910 * 22 21 12 24 24 C 1.38237 * 119.99420 * 179.77011 * 23 22 21 25 25 C 1.38235 * 120.00472 * 0.49718 * 24 23 22 26 26 C 1.38234 * 119.99727 * 359.75802 * 25 24 23 27 27 C 1.38230 * 120.00092 * 359.97438 * 26 25 24 28 28 H 1.08993 * 109.47516 * 269.98058 * 1 2 3 29 29 H 1.09003 * 109.47065 * 29.98379 * 1 2 3 30 30 H 1.09000 * 109.47309 * 149.97653 * 1 2 3 31 31 H 1.09001 * 109.46933 * 179.69304 * 6 5 4 32 32 H 1.08998 * 109.47561 * 180.02562 * 7 6 5 33 33 H 1.09001 * 109.46779 * 60.00252 * 7 6 5 34 34 H 1.09005 * 109.47429 * 300.00304 * 7 6 5 35 35 H 1.08995 * 109.47381 * 59.99591 * 8 6 5 36 36 H 1.09008 * 109.46919 * 180.02562 * 8 6 5 37 37 H 1.09001 * 109.47033 * 299.99763 * 8 6 5 38 38 H 0.97003 * 120.00391 * 179.97438 * 16 15 13 39 39 H 1.08998 * 109.47365 * 210.00256 * 21 12 10 40 40 H 1.09004 * 109.46906 * 330.00093 * 21 12 10 41 41 H 1.08000 * 120.00087 * 359.97438 * 23 22 21 42 42 H 1.08003 * 119.99510 * 180.23196 * 24 23 22 43 43 H 1.07996 * 120.00276 * 179.72773 * 25 24 23 44 44 H 1.08004 * 119.99739 * 179.97438 * 26 25 24 45 45 H 1.07998 * 120.00001 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2954 1.0338 0.0000 4 8 3.4608 0.7212 0.0055 5 6 3.6500 -0.6005 -0.0005 6 6 4.9720 -1.3239 -0.0010 7 6 5.7653 -0.9359 -1.2504 8 6 5.7659 -0.9363 1.2481 9 6 2.3993 -1.1699 -0.0003 10 6 2.0405 -2.5987 0.0002 11 8 1.9689 -3.2074 1.0509 12 7 1.7915 -3.2314 -1.1635 13 6 1.9809 -2.5782 -2.3525 14 1 1.7085 -1.5373 -2.4460 15 6 2.5236 -3.2547 -3.4383 16 7 2.3744 -2.7751 -4.6526 17 14 3.4652 -4.8460 -3.1717 18 1 2.5520 -6.0003 -3.3682 19 1 4.5837 -4.9284 -4.1450 20 1 4.0084 -4.8740 -1.7899 21 6 1.3184 -4.6179 -1.1568 22 6 -0.1879 -4.6344 -1.1165 23 6 -0.8467 -4.6528 0.0988 24 6 -2.2285 -4.6632 0.1357 25 6 -2.9515 -4.6655 -1.0425 26 6 -2.2927 -4.6524 -2.2577 27 6 -0.9110 -4.6365 -2.2947 28 1 -0.3634 -0.0003 1.0276 29 1 -0.3633 0.8902 -0.5136 30 1 -0.3634 -0.8898 -0.5142 31 1 4.7974 -2.3998 -0.0012 32 1 6.7213 -1.4594 -1.2510 33 1 5.9399 0.1401 -1.2502 34 1 5.1997 -1.2120 -2.1403 35 1 5.2008 -1.2127 2.1381 36 1 6.7224 -1.4592 1.2475 37 1 5.9405 0.1397 1.2483 38 1 2.7536 -3.2472 -5.4106 39 1 1.6633 -5.1239 -2.0585 40 1 1.7110 -5.1315 -0.2792 41 1 -0.2817 -4.6558 1.0192 42 1 -2.7432 -4.6738 1.0852 43 1 -4.0310 -4.6781 -1.0136 44 1 -2.8576 -4.6547 -3.1782 45 1 -0.3963 -4.6267 -3.2441 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001197353379.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:39:31 Heat of formation + Delta-G solvation = 50.339567 kcal Electronic energy + Delta-G solvation = -29285.378241 eV Core-core repulsion = 25464.300835 eV Total energy + Delta-G solvation = -3821.077406 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -44.20262 -39.39351 -38.16360 -35.65789 -35.09904 -33.94143 -32.30357 -31.17473 -30.43364 -30.16258 -28.27251 -26.94730 -26.30294 -25.18798 -23.21707 -22.44781 -22.06589 -21.04009 -19.53609 -18.77709 -17.65875 -17.14543 -16.73632 -16.01677 -15.80843 -15.49983 -15.04199 -14.79556 -14.45558 -14.25038 -13.83987 -13.44178 -13.08446 -12.99500 -12.88628 -12.84444 -12.75929 -12.54016 -12.46238 -12.28787 -12.13067 -12.01294 -11.66705 -11.19063 -11.12225 -11.00081 -10.96729 -10.87930 -10.58141 -10.38389 -10.33039 -10.04938 -9.49488 -9.27210 -9.00513 -8.64130 -8.46828 -8.30533 -7.97905 -6.58346 -4.21450 1.73613 1.85913 2.01819 2.58997 2.91197 3.09635 3.15450 3.32694 3.50686 3.98101 4.08212 4.47676 4.70676 4.74225 4.86346 5.18654 5.27671 5.28559 5.31285 5.32557 5.41230 5.60334 5.68996 5.75057 5.79890 5.82977 5.84361 5.91523 5.97495 6.00256 6.06143 6.09040 6.14781 6.15332 6.23109 6.33763 6.43016 6.47058 6.52153 6.56292 6.58721 6.88480 6.91782 7.14605 7.19085 7.45015 7.90462 8.14258 8.78159 8.83241 9.15186 9.45705 10.51688 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.011264 B = 0.005934 C = 0.004781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2485.196652 B = 4717.637096 C = 5854.856512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.047 3.953 3 N -0.368 5.368 4 O 0.088 5.912 5 C 0.008 3.992 6 C -0.007 4.007 7 C -0.149 4.149 8 C -0.146 4.146 9 C -0.184 4.184 10 C 0.559 3.441 11 O -0.582 6.582 12 N -0.443 5.443 13 C -0.337 4.337 14 H 0.103 0.897 15 C 0.073 3.927 16 N -0.854 5.854 17 Si 0.865 3.135 18 H -0.271 1.271 19 H -0.285 1.285 20 H -0.259 1.259 21 C 0.136 3.864 22 C -0.086 4.086 23 C -0.102 4.102 24 C -0.131 4.131 25 C -0.127 4.127 26 C -0.128 4.128 27 C -0.089 4.089 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.100 0.900 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.072 0.928 35 H 0.059 0.941 36 H 0.065 0.935 37 H 0.061 0.939 38 H 0.276 0.724 39 H 0.075 0.925 40 H 0.082 0.918 41 H 0.125 0.875 42 H 0.115 0.885 43 H 0.114 0.886 44 H 0.116 0.884 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.868 -1.109 5.522 5.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.114 4.114 3 N -0.076 5.076 4 O 0.027 5.973 5 C -0.055 4.055 6 C -0.027 4.027 7 C -0.206 4.206 8 C -0.204 4.204 9 C -0.191 4.191 10 C 0.347 3.653 11 O -0.467 6.467 12 N -0.162 5.162 13 C -0.465 4.465 14 H 0.121 0.879 15 C -0.135 4.135 16 N -0.488 5.488 17 Si 0.692 3.308 18 H -0.198 1.198 19 H -0.211 1.211 20 H -0.183 1.183 21 C 0.013 3.987 22 C -0.087 4.087 23 C -0.120 4.120 24 C -0.149 4.149 25 C -0.145 4.145 26 C -0.146 4.146 27 C -0.107 4.107 28 H 0.095 0.905 29 H 0.094 0.906 30 H 0.102 0.898 31 H 0.118 0.882 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.091 0.909 35 H 0.078 0.922 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.087 0.913 39 H 0.093 0.907 40 H 0.100 0.900 41 H 0.142 0.858 42 H 0.133 0.867 43 H 0.132 0.868 44 H 0.134 0.866 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -1.035 -0.119 5.790 5.883 hybrid contribution 0.246 -1.498 -0.367 1.561 sum -0.789 -1.616 5.423 5.713 Atomic orbital electron populations 1.20103 0.85934 1.03942 1.02797 1.24604 0.98208 0.87186 1.01433 1.73480 0.89356 1.23677 1.21104 1.84386 1.21261 1.22934 1.68743 1.24277 0.96848 0.83199 1.01166 1.19717 0.87181 0.98841 0.96956 1.21866 0.99681 1.01774 0.97270 1.21871 0.99767 1.02018 0.96731 1.21736 0.91987 0.95395 1.10007 1.16967 0.79910 0.84519 0.83903 1.90660 1.57020 1.67044 1.31934 1.43615 1.55972 1.10837 1.05789 1.18993 1.42947 0.98112 0.86399 0.87944 1.25279 0.95647 0.97897 0.94713 1.69726 1.40867 1.40081 0.98149 0.87121 0.80646 0.83556 0.79495 1.19816 1.21120 1.18266 1.20657 0.89920 0.85777 1.02299 1.20220 0.96047 0.99212 0.93205 1.21192 0.94243 0.98773 0.97841 1.21036 0.94134 1.01966 0.97795 1.21036 0.99189 1.01510 0.92802 1.21076 0.94520 1.01468 0.97549 1.21159 0.93760 0.97435 0.98367 0.90547 0.90627 0.89760 0.88227 0.91842 0.92110 0.90941 0.92174 0.91618 0.91990 0.91331 0.90719 0.89961 0.85753 0.86709 0.86840 0.86560 0.85723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.20 10.49 36.00 0.38 -0.82 16 2 C 0.05 0.96 7.59 -79.76 -0.61 0.35 16 3 N -0.37 -7.38 12.01 34.79 0.42 -6.96 16 4 O 0.09 1.70 11.06 18.60 0.21 1.90 16 5 C 0.01 0.16 6.06 -34.61 -0.21 -0.05 16 6 C -0.01 -0.12 3.33 -91.77 -0.31 -0.43 16 7 C -0.15 -2.21 9.18 37.16 0.34 -1.87 16 8 C -0.15 -1.91 9.18 37.16 0.34 -1.57 16 9 C -0.18 -3.96 4.68 -102.89 -0.48 -4.44 16 10 C 0.56 12.78 7.11 -12.57 -0.09 12.69 16 11 O -0.58 -14.00 16.48 5.24 0.09 -13.92 16 12 N -0.44 -10.15 2.14 -117.35 -0.25 -10.40 16 13 C -0.34 -8.34 9.12 -14.98 -0.14 -8.47 16 14 H 0.10 2.81 7.51 -52.49 -0.39 2.42 16 15 C 0.07 1.79 5.36 -17.46 -0.09 1.70 16 16 N -0.85 -22.25 13.96 55.50 0.77 -21.47 16 17 Si 0.86 19.03 24.86 -169.99 -4.23 14.80 16 18 H -0.27 -5.75 6.72 56.52 0.38 -5.37 16 19 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 20 H -0.26 -5.69 7.11 56.52 0.40 -5.29 16 21 C 0.14 2.87 4.35 -5.20 -0.02 2.85 16 22 C -0.09 -1.67 5.46 -104.62 -0.57 -2.24 16 23 C -0.10 -1.82 9.70 -39.58 -0.38 -2.20 16 24 C -0.13 -2.01 10.05 -39.58 -0.40 -2.40 16 25 C -0.13 -1.85 10.05 -39.58 -0.40 -2.25 16 26 C -0.13 -2.03 10.05 -39.59 -0.40 -2.43 16 27 C -0.09 -1.65 9.70 -39.59 -0.38 -2.03 16 28 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 29 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 31 H 0.10 1.78 7.71 -51.93 -0.40 1.38 16 32 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 35 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.06 0.71 8.14 -51.92 -0.42 0.29 16 37 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.28 6.75 8.31 -40.82 -0.34 6.41 16 39 H 0.08 1.60 3.15 -51.93 -0.16 1.44 16 40 H 0.08 1.70 7.29 -51.93 -0.38 1.32 16 41 H 0.12 2.26 7.87 -52.49 -0.41 1.84 16 42 H 0.11 1.46 8.06 -52.48 -0.42 1.04 16 43 H 0.11 1.32 8.06 -52.49 -0.42 0.90 16 44 H 0.12 1.57 8.06 -52.48 -0.42 1.15 16 45 H 0.12 2.44 8.06 -52.49 -0.42 2.01 16 LS Contribution 380.23 15.07 5.73 5.73 Total: -1.00 -28.24 380.23 -7.08 -35.32 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: -6.40 Total: 8.61 kcal Atomic # 6 Polarization: -10.20 SS G_CDS: -3.42 Total: -13.61 kcal Atomic # 7 Polarization: -39.78 SS G_CDS: 0.94 Total: -38.84 kcal Atomic # 8 Polarization: -12.31 SS G_CDS: 0.29 Total: -12.01 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -4.23 Total: 14.80 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -28.24 -7.08 -35.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001197353379.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.661 kcal (2) G-P(sol) polarization free energy of solvation -28.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.322 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds