Wall clock time and date at job start Tue Mar 31 2020 15:39:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30011 * 127.33262 * 2 1 4 4 O 1.20663 * 112.31831 * 179.71877 * 3 2 1 5 5 C 1.33515 * 113.15761 * 0.49936 * 4 3 2 6 6 C 1.50700 * 126.83174 * 179.77791 * 5 4 3 7 7 C 1.52998 * 109.47431 * 299.68957 * 6 5 4 8 8 C 1.52998 * 109.47201 * 59.69480 * 6 5 4 9 9 C 1.37420 * 106.33124 * 359.52161 * 5 4 3 10 10 C 1.47318 * 128.57421 * 180.29086 * 9 5 4 11 11 O 1.21638 * 119.99998 * 85.70198 * 10 9 5 12 12 N 1.34778 * 119.99925 * 265.70405 * 10 9 5 13 13 C 1.36972 * 120.00356 * 5.48918 * 12 10 9 14 14 H 1.07996 * 119.99476 * 320.77900 * 13 12 10 15 15 C 1.38973 * 120.00412 * 140.77781 * 13 12 10 16 16 N 1.31407 * 120.00231 * 161.31072 * 15 13 12 17 17 Si 1.86807 * 119.99966 * 341.31492 * 15 13 12 18 18 H 1.48498 * 109.47146 * 95.26903 * 17 15 13 19 19 H 1.48493 * 109.47364 * 215.27069 * 17 15 13 20 20 H 1.48505 * 109.46823 * 335.26989 * 17 15 13 21 21 C 1.46504 * 119.99855 * 185.48703 * 12 10 9 22 22 C 1.50692 * 109.47149 * 90.00015 * 21 12 10 23 23 C 1.38243 * 119.99848 * 269.72910 * 22 21 12 24 24 C 1.38237 * 119.99420 * 179.77011 * 23 22 21 25 25 C 1.38235 * 120.00472 * 0.49718 * 24 23 22 26 26 C 1.38234 * 119.99727 * 359.75802 * 25 24 23 27 27 C 1.38230 * 120.00092 * 359.97438 * 26 25 24 28 28 H 1.08993 * 109.47516 * 269.98058 * 1 2 3 29 29 H 1.09003 * 109.47065 * 29.98379 * 1 2 3 30 30 H 1.09000 * 109.47309 * 149.97653 * 1 2 3 31 31 H 1.09001 * 109.46933 * 179.69304 * 6 5 4 32 32 H 1.08998 * 109.47561 * 180.02562 * 7 6 5 33 33 H 1.09001 * 109.46779 * 60.00252 * 7 6 5 34 34 H 1.09005 * 109.47429 * 300.00304 * 7 6 5 35 35 H 1.08995 * 109.47381 * 59.99591 * 8 6 5 36 36 H 1.09008 * 109.46919 * 180.02562 * 8 6 5 37 37 H 1.09001 * 109.47033 * 299.99763 * 8 6 5 38 38 H 0.97003 * 120.00391 * 179.97438 * 16 15 13 39 39 H 1.08998 * 109.47365 * 210.00256 * 21 12 10 40 40 H 1.09004 * 109.46906 * 330.00093 * 21 12 10 41 41 H 1.08000 * 120.00087 * 359.97438 * 23 22 21 42 42 H 1.08003 * 119.99510 * 180.23196 * 24 23 22 43 43 H 1.07996 * 120.00276 * 179.72773 * 25 24 23 44 44 H 1.08004 * 119.99739 * 179.97438 * 26 25 24 45 45 H 1.07998 * 120.00001 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2954 1.0338 0.0000 4 8 3.4608 0.7212 0.0055 5 6 3.6500 -0.6005 -0.0005 6 6 4.9720 -1.3239 -0.0010 7 6 5.7653 -0.9359 -1.2504 8 6 5.7659 -0.9363 1.2481 9 6 2.3993 -1.1699 -0.0003 10 6 2.0405 -2.5987 0.0002 11 8 1.9689 -3.2074 1.0509 12 7 1.7915 -3.2314 -1.1635 13 6 1.9809 -2.5782 -2.3525 14 1 1.7085 -1.5373 -2.4460 15 6 2.5236 -3.2547 -3.4383 16 7 2.3744 -2.7751 -4.6526 17 14 3.4652 -4.8460 -3.1717 18 1 2.5520 -6.0003 -3.3682 19 1 4.5837 -4.9284 -4.1450 20 1 4.0084 -4.8740 -1.7899 21 6 1.3184 -4.6179 -1.1568 22 6 -0.1879 -4.6344 -1.1165 23 6 -0.8467 -4.6528 0.0988 24 6 -2.2285 -4.6632 0.1357 25 6 -2.9515 -4.6655 -1.0425 26 6 -2.2927 -4.6524 -2.2577 27 6 -0.9110 -4.6365 -2.2947 28 1 -0.3634 -0.0003 1.0276 29 1 -0.3633 0.8902 -0.5136 30 1 -0.3634 -0.8898 -0.5142 31 1 4.7974 -2.3998 -0.0012 32 1 6.7213 -1.4594 -1.2510 33 1 5.9399 0.1401 -1.2502 34 1 5.1997 -1.2120 -2.1403 35 1 5.2008 -1.2127 2.1381 36 1 6.7224 -1.4592 1.2475 37 1 5.9405 0.1397 1.2483 38 1 2.7536 -3.2472 -5.4106 39 1 1.6633 -5.1239 -2.0585 40 1 1.7110 -5.1315 -0.2792 41 1 -0.2817 -4.6558 1.0192 42 1 -2.7432 -4.6738 1.0852 43 1 -4.0310 -4.6781 -1.0136 44 1 -2.8576 -4.6547 -3.1782 45 1 -0.3963 -4.6267 -3.2441 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001197353379.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:39:30 Heat of formation + Delta-G solvation = 37.054427 kcal Electronic energy + Delta-G solvation = -29285.954328 eV Core-core repulsion = 25464.300835 eV Total energy + Delta-G solvation = -3821.653492 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -45.77382 -41.03799 -39.65207 -37.02128 -36.86268 -35.49890 -34.16111 -32.71242 -31.74288 -31.65519 -29.73984 -28.08272 -27.86619 -27.08699 -24.83422 -23.81091 -23.39225 -22.44130 -21.26413 -20.35798 -19.35596 -18.75260 -18.34117 -17.49995 -17.37906 -17.26352 -16.50771 -16.29717 -15.87201 -15.83649 -15.39681 -14.96060 -14.58332 -14.39787 -14.36147 -14.27349 -14.18045 -14.08382 -13.95813 -13.79679 -13.60000 -13.29309 -13.06022 -12.92656 -12.50398 -12.45655 -12.28104 -12.23523 -12.07279 -11.98184 -11.79910 -11.71302 -11.29623 -10.87731 -10.78472 -10.24585 -9.85041 -9.78088 -9.66144 -8.53840 -6.19142 0.37311 0.48309 0.54108 0.98805 1.12620 1.26085 1.36415 1.56556 1.95251 2.11898 2.53110 2.86558 3.03307 3.22833 3.29172 3.80872 3.84948 3.92779 3.95323 4.09813 4.15742 4.19469 4.27675 4.30169 4.34644 4.45734 4.48309 4.52325 4.66436 4.71055 4.74081 4.76622 4.78353 4.89948 4.93585 5.06768 5.09011 5.11047 5.19671 5.28919 5.31770 5.33646 5.60241 5.62729 5.77805 5.98603 6.14301 6.15498 6.86382 7.25222 7.25947 7.59773 8.59942 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.011264 B = 0.005934 C = 0.004781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2485.196652 B = 4717.637096 C = 5854.856512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.040 3.960 3 N -0.376 5.376 4 O 0.092 5.908 5 C 0.020 3.980 6 C -0.012 4.012 7 C -0.143 4.143 8 C -0.138 4.138 9 C -0.228 4.228 10 C 0.562 3.438 11 O -0.599 6.599 12 N -0.446 5.446 13 C -0.328 4.328 14 H 0.068 0.932 15 C 0.044 3.956 16 N -0.889 5.889 17 Si 0.911 3.089 18 H -0.258 1.258 19 H -0.279 1.279 20 H -0.261 1.261 21 C 0.134 3.866 22 C -0.108 4.108 23 C -0.114 4.114 24 C -0.125 4.125 25 C -0.115 4.115 26 C -0.127 4.127 27 C -0.110 4.110 28 H 0.098 0.902 29 H 0.093 0.907 30 H 0.066 0.934 31 H 0.080 0.920 32 H 0.093 0.907 33 H 0.074 0.926 34 H 0.038 0.962 35 H 0.051 0.949 36 H 0.094 0.906 37 H 0.074 0.926 38 H 0.281 0.719 39 H 0.069 0.931 40 H 0.081 0.919 41 H 0.114 0.886 42 H 0.147 0.853 43 H 0.155 0.845 44 H 0.141 0.859 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.510 -1.473 6.491 6.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.122 4.122 3 N -0.085 5.085 4 O 0.032 5.968 5 C -0.043 4.043 6 C -0.032 4.032 7 C -0.200 4.200 8 C -0.195 4.195 9 C -0.235 4.235 10 C 0.351 3.649 11 O -0.485 6.485 12 N -0.165 5.165 13 C -0.456 4.456 14 H 0.086 0.914 15 C -0.162 4.162 16 N -0.525 5.525 17 Si 0.736 3.264 18 H -0.184 1.184 19 H -0.206 1.206 20 H -0.185 1.185 21 C 0.012 3.988 22 C -0.109 4.109 23 C -0.133 4.133 24 C -0.142 4.142 25 C -0.133 4.133 26 C -0.145 4.145 27 C -0.128 4.128 28 H 0.116 0.884 29 H 0.111 0.889 30 H 0.085 0.915 31 H 0.098 0.902 32 H 0.112 0.888 33 H 0.093 0.907 34 H 0.057 0.943 35 H 0.070 0.930 36 H 0.112 0.888 37 H 0.093 0.907 38 H 0.091 0.909 39 H 0.087 0.913 40 H 0.099 0.901 41 H 0.132 0.868 42 H 0.165 0.835 43 H 0.172 0.828 44 H 0.159 0.841 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -1.678 -0.488 6.758 6.980 hybrid contribution 0.368 -1.348 -0.640 1.537 sum -1.310 -1.836 6.118 6.520 Atomic orbital electron populations 1.20170 0.84134 1.03899 1.04169 1.25059 0.99550 0.86729 1.00818 1.73442 0.89561 1.23667 1.21828 1.84362 1.21084 1.22792 1.68569 1.24863 0.97585 0.83107 0.98760 1.19925 0.86439 0.97340 0.99495 1.21839 1.00206 1.03088 0.94851 1.21846 1.00247 1.03220 0.94233 1.21858 0.93517 0.95209 1.12902 1.17121 0.79184 0.85046 0.83544 1.90625 1.57786 1.67740 1.32305 1.43634 1.56213 1.11446 1.05186 1.18593 1.42953 0.96840 0.87166 0.91449 1.25691 0.95911 1.00354 0.94210 1.69787 1.42104 1.41728 0.98891 0.86373 0.79784 0.81035 0.79187 1.18447 1.20559 1.18508 1.20685 0.91738 0.84578 1.01761 1.20111 0.94896 1.01537 0.94391 1.21195 0.95663 0.99773 0.96670 1.21402 0.92968 1.00121 0.99734 1.21479 1.01178 0.99011 0.91620 1.21383 0.93335 1.00239 0.99501 1.21113 0.95285 0.99279 0.97162 0.88368 0.88855 0.91459 0.90182 0.88809 0.90691 0.94286 0.92984 0.88754 0.90684 0.90914 0.91336 0.90109 0.86771 0.83541 0.82772 0.84117 0.87791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.27 10.49 71.23 0.75 -1.52 16 2 C 0.04 1.65 7.59 45.16 0.34 1.99 16 3 N -0.38 -15.13 12.01 -44.73 -0.54 -15.67 16 4 O 0.09 3.54 11.06 76.79 0.85 4.39 16 5 C 0.02 0.79 6.06 25.49 0.15 0.95 16 6 C -0.01 -0.40 3.33 -11.54 -0.04 -0.44 16 7 C -0.14 -4.13 9.18 71.98 0.66 -3.47 16 8 C -0.14 -3.35 9.18 71.98 0.66 -2.69 16 9 C -0.23 -10.07 4.68 -18.75 -0.09 -10.16 16 10 C 0.56 26.56 7.11 86.63 0.62 27.18 16 11 O -0.60 -29.56 16.48 -4.15 -0.07 -29.63 16 12 N -0.45 -21.18 2.14 -643.42 -1.38 -22.56 16 13 C -0.33 -16.93 9.12 84.07 0.77 -16.16 16 14 H 0.07 3.93 7.51 -2.91 -0.02 3.90 16 15 C 0.04 2.22 5.36 84.93 0.45 2.68 16 16 N -0.89 -47.76 13.96 21.67 0.30 -47.46 16 17 Si 0.91 39.89 24.86 68.60 1.71 41.59 16 18 H -0.26 -10.72 6.72 99.48 0.67 -10.05 16 19 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 20 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 21 C 0.13 5.85 4.35 85.63 0.37 6.22 16 22 C -0.11 -4.28 5.46 -19.87 -0.11 -4.39 16 23 C -0.11 -4.03 9.70 22.27 0.22 -3.81 16 24 C -0.12 -3.47 10.05 22.27 0.22 -3.25 16 25 C -0.11 -2.94 10.05 22.27 0.22 -2.72 16 26 C -0.13 -3.77 10.05 22.27 0.22 -3.55 16 27 C -0.11 -4.11 9.70 22.27 0.22 -3.89 16 28 H 0.10 2.89 8.14 -2.39 -0.02 2.87 16 29 H 0.09 2.81 8.14 -2.39 -0.02 2.79 16 30 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 31 H 0.08 2.90 7.71 -2.39 -0.02 2.89 16 32 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 33 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.04 1.38 8.14 -2.38 -0.02 1.36 16 35 H 0.05 1.34 8.14 -2.39 -0.02 1.33 16 36 H 0.09 1.76 8.14 -2.38 -0.02 1.74 16 37 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.28 14.05 8.31 -92.71 -0.77 13.28 16 39 H 0.07 3.01 3.15 -2.39 -0.01 3.01 16 40 H 0.08 3.46 7.29 -2.39 -0.02 3.44 16 41 H 0.11 4.19 7.87 -2.91 -0.02 4.17 16 42 H 0.15 3.15 8.06 -2.91 -0.02 3.12 16 43 H 0.15 2.75 8.06 -2.91 -0.02 2.73 16 44 H 0.14 3.44 8.06 -2.91 -0.02 3.41 16 45 H 0.10 4.24 8.06 -2.91 -0.02 4.22 16 Total: -1.00 -63.45 380.23 7.47 -55.98 By element: Atomic # 1 Polarization: 29.44 SS G_CDS: 0.96 Total: 30.40 kcal Atomic # 6 Polarization: -22.68 SS G_CDS: 5.64 Total: -17.04 kcal Atomic # 7 Polarization: -84.07 SS G_CDS: -1.61 Total: -85.68 kcal Atomic # 8 Polarization: -26.02 SS G_CDS: 0.78 Total: -25.24 kcal Atomic # 14 Polarization: 39.89 SS G_CDS: 1.71 Total: 41.59 kcal Total: -63.45 7.47 -55.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001197353379.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.030 kcal (2) G-P(sol) polarization free energy of solvation -63.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.975 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds