Wall clock time and date at job start Tue Mar 31 2020 15:20:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 C 1.38362 * 120.40683 * 2 1 4 4 C 1.39375 * 118.42286 * 179.97438 * 3 2 1 5 5 N 1.39949 * 120.43254 * 180.02562 * 4 3 2 6 6 C 1.39757 * 120.00015 * 175.24827 * 5 4 3 7 7 C 1.38791 * 120.10340 * 254.82806 * 6 5 4 8 8 C 1.38187 * 119.98789 * 180.02562 * 7 6 5 9 9 C 1.38359 * 120.20571 * 0.02562 * 8 7 6 10 10 C 1.38172 * 120.21790 * 359.97438 * 9 8 7 11 11 C 1.38724 * 120.00738 * 359.67614 * 10 9 8 12 12 O 1.35784 * 120.10812 * 180.32039 * 11 10 9 13 13 C 1.34802 * 116.99810 * 5.65927 * 12 11 10 14 14 H 1.08006 * 120.00066 * 354.92425 * 13 12 11 15 15 C 1.38615 * 120.00387 * 174.92721 * 13 12 11 16 16 N 1.31583 * 119.99741 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 120.00403 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47170 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.47284 * 120.00031 * 17 15 13 20 20 H 1.48504 * 109.47436 * 240.00164 * 17 15 13 21 21 C 1.38753 * 119.13593 * 359.97438 * 4 3 2 22 22 N 1.31922 * 120.72539 * 359.97438 * 21 4 3 23 23 C 1.32233 * 121.72604 * 359.76471 * 22 21 4 24 24 O 1.35780 * 119.60163 * 180.26470 * 23 22 21 25 25 C 1.42896 * 116.99724 * 0.23113 * 24 23 22 26 26 C 1.52999 * 109.47050 * 89.99839 * 25 24 23 27 27 C 1.53002 * 109.46900 * 209.99840 * 25 24 23 28 28 H 1.08994 * 109.47371 * 89.99891 * 1 2 3 29 29 H 1.09001 * 109.46477 * 330.00016 * 1 2 3 30 30 H 1.08999 * 109.46656 * 210.00160 * 1 2 3 31 31 H 1.08000 * 120.78719 * 359.95650 * 3 2 1 32 32 H 0.97007 * 119.99614 * 355.24332 * 5 4 3 33 33 H 1.07999 * 120.01055 * 359.97438 * 7 6 5 34 34 H 1.07999 * 119.89471 * 180.02562 * 8 7 6 35 35 H 1.08000 * 119.88688 * 179.97438 * 9 8 7 36 36 H 1.07996 * 119.99559 * 179.97438 * 10 9 8 37 37 H 0.97000 * 120.00107 * 180.02562 * 16 15 13 38 38 H 1.07994 * 119.63782 * 179.97438 * 21 4 3 39 39 H 1.08999 * 109.47315 * 329.99543 * 25 24 23 40 40 H 1.09007 * 109.46760 * 179.97438 * 26 25 24 41 41 H 1.09000 * 109.47243 * 299.99791 * 26 25 24 42 42 H 1.08999 * 109.47303 * 59.99697 * 26 25 24 43 43 H 1.08997 * 109.47686 * 59.99853 * 27 25 24 44 44 H 1.08998 * 109.47241 * 180.02562 * 27 25 24 45 45 H 1.09009 * 109.47073 * 299.99888 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2074 1.1933 0.0000 4 6 3.6003 1.1451 0.0005 5 7 4.3505 2.3265 0.0011 6 6 5.7433 2.2698 0.1019 7 6 6.3693 2.6064 1.2940 8 6 7.7466 2.5500 1.3909 9 6 8.5055 2.1590 0.3021 10 6 7.8912 1.8221 -0.8888 11 6 6.5087 1.8686 -0.9938 12 8 5.9026 1.5316 -2.1611 13 6 6.6904 1.0487 -3.1426 14 1 7.7620 1.0216 -3.0108 15 6 6.1252 0.5870 -4.3211 16 7 4.8196 0.6196 -4.4816 17 14 7.2170 -0.0814 -5.6815 18 1 8.6379 -0.0100 -5.2560 19 1 6.8541 -1.4946 -5.9581 20 1 7.0269 0.7283 -6.9118 21 6 4.2335 -0.0896 0.0016 22 7 3.5320 -1.2068 0.0026 23 6 2.2098 -1.1977 0.0073 24 8 1.5309 -2.3736 0.0136 25 6 2.3093 -3.5719 0.0199 26 6 2.5872 -3.9919 1.4647 27 6 1.5394 -4.6839 -0.6954 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3632 0.8900 0.5139 30 1 -0.3632 -0.8900 0.5139 31 1 1.6870 2.1397 -0.0007 32 1 3.9038 3.1847 -0.0685 33 1 5.7801 2.9132 2.1456 34 1 8.2321 2.8119 2.3194 35 1 9.5816 2.1172 0.3834 36 1 8.4871 1.5178 -1.7365 37 1 4.4241 0.2962 -5.3061 38 1 5.3124 -0.1364 0.0016 39 1 3.2535 -3.3946 -0.4950 40 1 3.1806 -4.9063 1.4695 41 1 3.1357 -3.1997 1.9742 42 1 1.6430 -4.1692 1.9795 43 1 1.3413 -4.3848 -1.7246 44 1 2.1329 -5.5981 -0.6902 45 1 0.5951 -4.8613 -0.1805 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212599328.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:20:49 Heat of formation + Delta-G solvation = -1.641712 kcal Electronic energy + Delta-G solvation = -28153.144064 eV Core-core repulsion = 24329.812581 eV Total energy + Delta-G solvation = -3823.331483 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.28996 -39.29169 -37.84885 -36.54375 -34.90765 -33.31349 -32.54371 -32.30745 -30.08155 -29.03526 -27.32911 -27.10981 -26.58726 -25.38698 -23.41584 -22.18982 -21.58340 -20.83946 -20.42343 -18.02723 -17.95277 -17.49604 -16.74738 -15.99048 -15.38718 -15.27421 -14.74704 -14.66165 -14.23434 -14.16092 -13.84151 -13.66489 -13.48784 -13.23183 -12.98453 -12.78543 -12.66057 -12.42349 -12.32994 -12.19282 -12.09005 -11.78189 -11.75254 -11.57031 -11.37496 -11.08765 -10.98482 -10.93613 -10.70140 -10.54475 -10.45930 -9.77641 -9.45685 -9.03576 -8.89142 -8.69922 -8.17551 -7.33535 -6.67458 -6.48615 -4.07786 1.74038 1.91891 2.12462 2.26596 3.09228 3.11259 3.16263 3.51145 3.90963 3.99857 4.40924 4.45355 4.95551 5.02692 5.07468 5.14507 5.18416 5.32017 5.39648 5.45886 5.49817 5.58155 5.64110 5.69264 5.71983 5.83582 5.90381 5.91936 5.97796 6.02072 6.06980 6.14940 6.23369 6.27540 6.34210 6.50144 6.57368 6.59929 6.69517 6.92880 6.99315 7.04609 7.25503 7.28849 7.56585 7.78672 7.91518 8.05403 8.26636 8.57680 8.95674 9.62978 10.67045 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.008830 B = 0.004808 C = 0.003803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3170.403905 B = 5822.057380 C = 7361.295277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.115 4.115 3 C -0.125 4.125 4 C 0.158 3.842 5 N -0.673 5.673 6 C 0.051 3.949 7 C -0.073 4.073 8 C -0.211 4.211 9 C -0.070 4.070 10 C -0.231 4.231 11 C 0.146 3.854 12 O -0.157 6.157 13 C -0.395 4.395 14 H 0.092 0.908 15 C 0.044 3.956 16 N -0.850 5.850 17 Si 0.938 3.062 18 H -0.266 1.266 19 H -0.276 1.276 20 H -0.276 1.276 21 C 0.094 3.906 22 N -0.498 5.498 23 C 0.256 3.744 24 O -0.307 6.307 25 C 0.082 3.918 26 C -0.165 4.165 27 C -0.148 4.148 28 H 0.067 0.933 29 H 0.060 0.940 30 H 0.068 0.932 31 H 0.132 0.868 32 H 0.399 0.601 33 H 0.114 0.886 34 H 0.109 0.891 35 H 0.109 0.891 36 H 0.129 0.871 37 H 0.269 0.731 38 H 0.152 0.848 39 H 0.088 0.912 40 H 0.064 0.936 41 H 0.060 0.940 42 H 0.056 0.944 43 H 0.062 0.938 44 H 0.071 0.929 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.010 -2.434 9.547 10.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.119 4.119 3 C -0.156 4.156 4 C 0.055 3.945 5 N -0.299 5.299 6 C -0.042 4.042 7 C -0.093 4.093 8 C -0.230 4.230 9 C -0.088 4.088 10 C -0.251 4.251 11 C 0.089 3.911 12 O -0.059 6.059 13 C -0.471 4.471 14 H 0.109 0.891 15 C -0.162 4.162 16 N -0.484 5.484 17 Si 0.763 3.237 18 H -0.190 1.190 19 H -0.201 1.201 20 H -0.201 1.201 21 C -0.067 4.067 22 N -0.218 5.218 23 C 0.077 3.923 24 O -0.216 6.216 25 C 0.025 3.975 26 C -0.222 4.222 27 C -0.205 4.205 28 H 0.085 0.915 29 H 0.079 0.921 30 H 0.087 0.913 31 H 0.150 0.850 32 H 0.235 0.765 33 H 0.132 0.868 34 H 0.127 0.873 35 H 0.127 0.873 36 H 0.147 0.853 37 H 0.079 0.921 38 H 0.169 0.831 39 H 0.106 0.894 40 H 0.083 0.917 41 H 0.080 0.920 42 H 0.075 0.925 43 H 0.081 0.919 44 H 0.090 0.910 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.123 -3.422 9.272 10.709 hybrid contribution 0.445 0.767 -0.913 1.273 sum -3.678 -2.655 8.358 9.510 Atomic orbital electron populations 1.20512 0.90388 1.02197 1.02143 1.19465 0.96725 0.90167 1.05499 1.20612 0.91616 0.97643 1.05683 1.18625 0.90732 0.88305 0.96878 1.41241 1.02721 1.04835 1.81107 1.16585 0.82205 1.13325 0.92127 1.20870 0.94542 0.98900 0.94990 1.20482 0.93274 1.10346 0.98914 1.20824 0.98693 0.96587 0.92709 1.21121 0.94177 1.10427 0.99397 1.19769 0.91050 0.93433 0.86861 1.84039 1.35582 1.68887 1.17369 1.21370 0.90675 1.41564 0.93513 0.89053 1.25263 0.96367 0.96611 0.97948 1.70069 1.09538 1.42429 1.26337 0.85696 0.79372 0.78739 0.79937 1.19049 1.20109 1.20148 1.21816 0.99390 0.85198 1.00308 1.67032 1.06642 1.31918 1.16239 1.19216 0.87511 0.85665 0.99933 1.86192 1.34587 1.11785 1.89054 1.22166 0.96041 0.82721 0.96579 1.22187 1.01658 1.01720 0.96661 1.21873 1.00703 0.97035 1.00908 0.91464 0.92052 0.91298 0.84980 0.76471 0.86805 0.87319 0.87306 0.85288 0.92089 0.83126 0.89406 0.91690 0.92039 0.92519 0.91919 0.91020 0.92104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.30 9.81 36.01 0.35 -0.94 16 2 C -0.12 -2.02 5.91 -104.34 -0.62 -2.63 16 3 C -0.13 -2.19 9.72 -39.11 -0.38 -2.57 16 4 C 0.16 3.11 6.53 -83.54 -0.55 2.57 16 5 N -0.67 -12.51 5.19 -8.16 -0.04 -12.55 16 6 C 0.05 1.01 4.90 -83.55 -0.41 0.61 16 7 C -0.07 -1.24 9.97 -39.40 -0.39 -1.63 16 8 C -0.21 -3.41 10.04 -39.56 -0.40 -3.81 16 9 C -0.07 -1.20 10.04 -39.56 -0.40 -1.60 16 10 C -0.23 -4.76 9.16 -39.43 -0.36 -5.12 16 11 C 0.15 3.31 5.52 -38.91 -0.21 3.10 16 12 O -0.16 -4.23 9.22 0.02 0.00 -4.23 16 13 C -0.40 -10.69 9.49 30.87 0.29 -10.39 16 14 H 0.09 2.30 5.21 -52.48 -0.27 2.03 16 15 C 0.04 1.18 5.49 -17.52 -0.10 1.09 16 16 N -0.85 -24.62 13.67 55.48 0.76 -23.87 16 17 Si 0.94 20.43 29.55 -169.99 -5.02 15.41 16 18 H -0.27 -5.54 7.11 56.52 0.40 -5.13 16 19 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 20 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 21 C 0.09 2.03 10.14 -17.32 -0.18 1.85 16 22 N -0.50 -10.43 8.63 -13.16 -0.11 -10.55 16 23 C 0.26 4.95 7.43 -17.15 -0.13 4.82 16 24 O -0.31 -5.35 8.81 -19.05 -0.17 -5.52 16 25 C 0.08 1.24 3.11 -26.73 -0.08 1.16 16 26 C -0.16 -2.16 9.53 37.16 0.35 -1.80 16 27 C -0.15 -1.80 9.56 37.16 0.36 -1.44 16 28 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.06 0.70 8.09 -51.93 -0.42 0.28 16 30 H 0.07 0.91 7.53 -51.93 -0.39 0.51 16 31 H 0.13 1.89 8.06 -52.49 -0.42 1.47 16 32 H 0.40 6.45 8.85 -40.82 -0.36 6.09 16 33 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 34 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 35 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 36 H 0.13 2.68 5.64 -52.49 -0.30 2.39 16 37 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 38 H 0.15 3.44 6.32 -52.49 -0.33 3.11 16 39 H 0.09 1.54 6.98 -51.93 -0.36 1.18 16 40 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 45 H 0.06 0.67 8.14 -51.92 -0.42 0.24 16 LS Contribution 378.91 15.07 5.71 5.71 Total: -1.00 -30.79 378.91 -7.94 -38.73 By element: Atomic # 1 Polarization: 19.84 SS G_CDS: -6.22 Total: 13.62 kcal Atomic # 6 Polarization: -13.91 SS G_CDS: -2.84 Total: -16.75 kcal Atomic # 7 Polarization: -47.56 SS G_CDS: 0.60 Total: -46.96 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: -0.17 Total: -9.75 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -30.79 -7.94 -38.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212599328.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.087 kcal (2) G-P(sol) polarization free energy of solvation -30.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds