Wall clock time and date at job start Tue Mar 31 2020 15:20:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 C 1.38362 * 120.40683 * 2 1 4 4 C 1.39375 * 118.42286 * 179.97438 * 3 2 1 5 5 N 1.39949 * 120.43254 * 180.02562 * 4 3 2 6 6 C 1.39757 * 120.00015 * 175.24827 * 5 4 3 7 7 C 1.38791 * 120.10340 * 254.82806 * 6 5 4 8 8 C 1.38187 * 119.98789 * 180.02562 * 7 6 5 9 9 C 1.38359 * 120.20571 * 0.02562 * 8 7 6 10 10 C 1.38172 * 120.21790 * 359.97438 * 9 8 7 11 11 C 1.38724 * 120.00738 * 359.67614 * 10 9 8 12 12 O 1.35784 * 120.10812 * 180.32039 * 11 10 9 13 13 C 1.34802 * 116.99810 * 5.65927 * 12 11 10 14 14 H 1.08006 * 120.00066 * 354.92425 * 13 12 11 15 15 C 1.38615 * 120.00387 * 174.92721 * 13 12 11 16 16 N 1.31583 * 119.99741 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 120.00403 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47170 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.47284 * 120.00031 * 17 15 13 20 20 H 1.48504 * 109.47436 * 240.00164 * 17 15 13 21 21 C 1.38753 * 119.13593 * 359.97438 * 4 3 2 22 22 N 1.31922 * 120.72539 * 359.97438 * 21 4 3 23 23 C 1.32233 * 121.72604 * 359.76471 * 22 21 4 24 24 O 1.35780 * 119.60163 * 180.26470 * 23 22 21 25 25 C 1.42896 * 116.99724 * 0.23113 * 24 23 22 26 26 C 1.52999 * 109.47050 * 89.99839 * 25 24 23 27 27 C 1.53002 * 109.46900 * 209.99840 * 25 24 23 28 28 H 1.08994 * 109.47371 * 89.99891 * 1 2 3 29 29 H 1.09001 * 109.46477 * 330.00016 * 1 2 3 30 30 H 1.08999 * 109.46656 * 210.00160 * 1 2 3 31 31 H 1.08000 * 120.78719 * 359.95650 * 3 2 1 32 32 H 0.97007 * 119.99614 * 355.24332 * 5 4 3 33 33 H 1.07999 * 120.01055 * 359.97438 * 7 6 5 34 34 H 1.07999 * 119.89471 * 180.02562 * 8 7 6 35 35 H 1.08000 * 119.88688 * 179.97438 * 9 8 7 36 36 H 1.07996 * 119.99559 * 179.97438 * 10 9 8 37 37 H 0.97000 * 120.00107 * 180.02562 * 16 15 13 38 38 H 1.07994 * 119.63782 * 179.97438 * 21 4 3 39 39 H 1.08999 * 109.47315 * 329.99543 * 25 24 23 40 40 H 1.09007 * 109.46760 * 179.97438 * 26 25 24 41 41 H 1.09000 * 109.47243 * 299.99791 * 26 25 24 42 42 H 1.08999 * 109.47303 * 59.99697 * 26 25 24 43 43 H 1.08997 * 109.47686 * 59.99853 * 27 25 24 44 44 H 1.08998 * 109.47241 * 180.02562 * 27 25 24 45 45 H 1.09009 * 109.47073 * 299.99888 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2074 1.1933 0.0000 4 6 3.6003 1.1451 0.0005 5 7 4.3505 2.3265 0.0011 6 6 5.7433 2.2698 0.1019 7 6 6.3693 2.6064 1.2940 8 6 7.7466 2.5500 1.3909 9 6 8.5055 2.1590 0.3021 10 6 7.8912 1.8221 -0.8888 11 6 6.5087 1.8686 -0.9938 12 8 5.9026 1.5316 -2.1611 13 6 6.6904 1.0487 -3.1426 14 1 7.7620 1.0216 -3.0108 15 6 6.1252 0.5870 -4.3211 16 7 4.8196 0.6196 -4.4816 17 14 7.2170 -0.0814 -5.6815 18 1 8.6379 -0.0100 -5.2560 19 1 6.8541 -1.4946 -5.9581 20 1 7.0269 0.7283 -6.9118 21 6 4.2335 -0.0896 0.0016 22 7 3.5320 -1.2068 0.0026 23 6 2.2098 -1.1977 0.0073 24 8 1.5309 -2.3736 0.0136 25 6 2.3093 -3.5719 0.0199 26 6 2.5872 -3.9919 1.4647 27 6 1.5394 -4.6839 -0.6954 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3632 0.8900 0.5139 30 1 -0.3632 -0.8900 0.5139 31 1 1.6870 2.1397 -0.0007 32 1 3.9038 3.1847 -0.0685 33 1 5.7801 2.9132 2.1456 34 1 8.2321 2.8119 2.3194 35 1 9.5816 2.1172 0.3834 36 1 8.4871 1.5178 -1.7365 37 1 4.4241 0.2962 -5.3061 38 1 5.3124 -0.1364 0.0016 39 1 3.2535 -3.3946 -0.4950 40 1 3.1806 -4.9063 1.4695 41 1 3.1357 -3.1997 1.9742 42 1 1.6430 -4.1692 1.9795 43 1 1.3413 -4.3848 -1.7246 44 1 2.1329 -5.5981 -0.6902 45 1 0.5951 -4.8613 -0.1805 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212599328.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:20:48 Heat of formation + Delta-G solvation = -20.876157 kcal Electronic energy + Delta-G solvation = -28153.978132 eV Core-core repulsion = 24329.812581 eV Total energy + Delta-G solvation = -3824.165551 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.74979 -40.86015 -39.26287 -38.18569 -36.35660 -34.68455 -34.26734 -33.74829 -31.53111 -30.57879 -28.81608 -28.20191 -27.89198 -27.29173 -24.81270 -23.67339 -23.18355 -22.17458 -21.82238 -19.81539 -19.33296 -19.11393 -18.28116 -17.54403 -16.85140 -16.65811 -16.39692 -16.32203 -15.68120 -15.47463 -15.32677 -15.23610 -14.85119 -14.72621 -14.50195 -14.22122 -13.98219 -13.64832 -13.63481 -13.55940 -13.28234 -13.15110 -13.03736 -12.92543 -12.79670 -12.56740 -12.49648 -12.44658 -12.17542 -11.96945 -11.76072 -11.35541 -11.09697 -10.81781 -10.51305 -10.09605 -9.65096 -8.97743 -8.46568 -8.16420 -6.11870 0.26613 0.42338 0.63431 0.74147 1.30822 1.38747 1.47606 2.13671 2.19343 2.55002 2.83412 2.92282 3.15917 3.47714 3.52467 3.93854 4.01153 4.02033 4.07744 4.14411 4.20193 4.28518 4.31144 4.48174 4.49077 4.62516 4.69250 4.69781 4.83800 4.84018 4.87123 4.91057 4.95576 5.07232 5.10776 5.12656 5.17486 5.23751 5.27197 5.30980 5.55345 5.60502 5.63540 5.76282 5.97995 6.09468 6.35884 6.55877 6.84358 6.99370 7.08053 7.80627 8.74961 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.008830 B = 0.004808 C = 0.003803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3170.403905 B = 5822.057380 C = 7361.295277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.115 4.115 3 C -0.122 4.122 4 C 0.149 3.851 5 N -0.670 5.670 6 C 0.050 3.950 7 C -0.072 4.072 8 C -0.184 4.184 9 C -0.069 4.069 10 C -0.246 4.246 11 C 0.111 3.889 12 O -0.205 6.205 13 C -0.409 4.409 14 H 0.098 0.902 15 C -0.017 4.017 16 N -0.909 5.909 17 Si 1.008 2.992 18 H -0.251 1.251 19 H -0.275 1.275 20 H -0.268 1.268 21 C 0.061 3.939 22 N -0.518 5.518 23 C 0.240 3.760 24 O -0.309 6.309 25 C 0.071 3.929 26 C -0.156 4.156 27 C -0.141 4.141 28 H 0.071 0.929 29 H 0.091 0.909 30 H 0.074 0.926 31 H 0.168 0.832 32 H 0.411 0.589 33 H 0.146 0.854 34 H 0.154 0.846 35 H 0.145 0.855 36 H 0.117 0.883 37 H 0.267 0.733 38 H 0.124 0.876 39 H 0.055 0.945 40 H 0.086 0.914 41 H 0.038 0.962 42 H 0.073 0.927 43 H 0.050 0.950 44 H 0.094 0.906 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.002 -1.962 11.899 12.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.118 4.118 3 C -0.152 4.152 4 C 0.045 3.955 5 N -0.298 5.298 6 C -0.044 4.044 7 C -0.091 4.091 8 C -0.203 4.203 9 C -0.087 4.087 10 C -0.266 4.266 11 C 0.057 3.943 12 O -0.110 6.110 13 C -0.486 4.486 14 H 0.115 0.885 15 C -0.216 4.216 16 N -0.547 5.547 17 Si 0.828 3.172 18 H -0.174 1.174 19 H -0.201 1.201 20 H -0.193 1.193 21 C -0.099 4.099 22 N -0.239 5.239 23 C 0.059 3.941 24 O -0.218 6.218 25 C 0.015 3.985 26 C -0.213 4.213 27 C -0.198 4.198 28 H 0.090 0.910 29 H 0.110 0.890 30 H 0.093 0.907 31 H 0.186 0.814 32 H 0.248 0.752 33 H 0.164 0.836 34 H 0.171 0.829 35 H 0.163 0.837 36 H 0.135 0.865 37 H 0.076 0.924 38 H 0.141 0.859 39 H 0.073 0.927 40 H 0.104 0.896 41 H 0.057 0.943 42 H 0.092 0.908 43 H 0.069 0.931 44 H 0.113 0.887 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -4.072 -2.916 11.681 12.709 hybrid contribution 0.511 0.686 -1.289 1.547 sum -3.561 -2.230 10.391 11.209 Atomic orbital electron populations 1.20587 0.87253 1.04011 1.02892 1.20027 0.98983 0.89432 1.03396 1.21047 0.90711 0.99250 1.04186 1.18746 0.91881 0.87903 0.96971 1.41228 1.02440 1.05062 1.81048 1.16957 0.82784 1.12397 0.92283 1.21279 0.95463 0.97763 0.94614 1.21070 0.92876 1.06461 0.99894 1.21227 1.00720 0.95280 0.91467 1.21269 0.93535 1.11101 1.00731 1.20368 0.92489 0.94494 0.86914 1.84011 1.36428 1.71773 1.18834 1.21763 0.91196 1.41486 0.94143 0.88484 1.26392 0.97780 0.97002 1.00387 1.70217 1.11635 1.45620 1.27188 0.84675 0.78063 0.77766 0.76692 1.17399 1.20075 1.19320 1.21517 0.98450 0.86496 1.03399 1.66917 1.07893 1.32147 1.16959 1.19621 0.87234 0.87072 1.00153 1.86184 1.34704 1.11883 1.89027 1.22416 0.95138 0.82861 0.98097 1.22116 1.02538 1.01736 0.94925 1.21866 1.01484 0.96503 0.99911 0.91030 0.89034 0.90728 0.81427 0.75156 0.83612 0.82871 0.83739 0.86515 0.92383 0.85871 0.92723 0.89568 0.94316 0.90815 0.93052 0.88747 0.90350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.27 9.81 71.24 0.70 -1.57 16 2 C -0.12 -3.98 5.91 -19.68 -0.12 -4.09 16 3 C -0.12 -4.20 9.72 22.57 0.22 -3.98 16 4 C 0.15 6.02 6.53 38.24 0.25 6.27 16 5 N -0.67 -25.17 5.19 -179.72 -0.93 -26.10 16 6 C 0.05 1.97 4.90 38.33 0.19 2.16 16 7 C -0.07 -2.25 9.97 22.39 0.22 -2.02 16 8 C -0.18 -5.22 10.04 22.29 0.22 -5.00 16 9 C -0.07 -2.21 10.04 22.28 0.22 -1.98 16 10 C -0.25 -10.31 9.16 22.37 0.20 -10.10 16 11 C 0.11 5.22 5.52 22.70 0.13 5.35 16 12 O -0.21 -11.81 9.22 -22.83 -0.21 -12.02 16 13 C -0.41 -23.54 9.49 67.91 0.64 -22.90 16 14 H 0.10 5.18 5.21 -2.91 -0.02 5.17 16 15 C -0.02 -0.98 5.49 84.82 0.47 -0.52 16 16 N -0.91 -56.13 13.67 21.61 0.30 -55.84 16 17 Si 1.01 43.82 29.55 68.60 2.03 45.85 16 18 H -0.25 -10.05 7.11 99.48 0.71 -9.34 16 19 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 20 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 21 C 0.06 2.82 10.14 84.80 0.86 3.68 16 22 N -0.52 -23.08 8.63 -308.36 -2.66 -25.74 16 23 C 0.24 9.53 7.43 84.78 0.63 10.16 16 24 O -0.31 -10.90 8.81 -91.08 -0.80 -11.71 16 25 C 0.07 2.21 3.11 30.59 0.10 2.31 16 26 C -0.16 -4.01 9.53 71.98 0.69 -3.32 16 27 C -0.14 -3.29 9.56 71.98 0.69 -2.61 16 28 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.09 1.76 8.09 -2.39 -0.02 1.74 16 30 H 0.07 1.80 7.53 -2.39 -0.02 1.79 16 31 H 0.17 4.40 8.06 -2.91 -0.02 4.38 16 32 H 0.41 13.11 8.85 -92.70 -0.82 12.29 16 33 H 0.15 3.68 8.06 -2.91 -0.02 3.65 16 34 H 0.15 3.12 8.06 -2.91 -0.02 3.10 16 35 H 0.14 3.59 8.06 -2.91 -0.02 3.57 16 36 H 0.12 5.06 5.64 -2.91 -0.02 5.05 16 37 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 38 H 0.12 6.16 6.32 -2.91 -0.02 6.14 16 39 H 0.05 2.05 6.98 -2.39 -0.02 2.03 16 40 H 0.09 1.82 8.14 -2.38 -0.02 1.80 16 41 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 43 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 44 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 45 H 0.08 1.56 8.14 -2.38 -0.02 1.54 16 Total: -1.00 -74.42 378.91 4.22 -70.20 By element: Atomic # 1 Polarization: 43.33 SS G_CDS: 0.20 Total: 43.53 kcal Atomic # 6 Polarization: -34.48 SS G_CDS: 6.31 Total: -28.17 kcal Atomic # 7 Polarization: -104.39 SS G_CDS: -3.30 Total: -107.69 kcal Atomic # 8 Polarization: -22.71 SS G_CDS: -1.01 Total: -23.72 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Total: -74.42 4.22 -70.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212599328.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.326 kcal (2) G-P(sol) polarization free energy of solvation -74.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds