Wall clock time and date at job start Tue Mar 31 2020 15:20:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38370 * 120.40181 * 2 1 4 4 C 1.39378 * 118.41317 * 180.28680 * 3 2 1 5 5 N 1.39963 * 120.42602 * 179.71192 * 4 3 2 6 6 C 1.39767 * 119.99786 * 154.29050 * 5 4 3 7 7 C 1.38983 * 120.00919 * 328.86420 * 6 5 4 8 8 C 1.37989 * 119.99199 * 179.76604 * 7 6 5 9 9 C 1.38912 * 120.00679 * 0.50739 * 8 7 6 10 10 O 1.35792 * 119.99142 * 179.71825 * 9 8 7 11 11 C 1.34811 * 116.99992 * 186.86863 * 10 9 8 12 12 H 1.07999 * 119.99960 * 354.60937 * 11 10 9 13 13 C 1.38605 * 119.99935 * 174.61011 * 11 10 9 14 14 N 1.31587 * 120.00553 * 359.97438 * 13 11 10 15 15 Si 1.86809 * 120.00091 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.46908 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.46850 * 119.99957 * 15 13 11 18 18 H 1.48496 * 109.46855 * 239.99987 * 15 13 11 19 19 C 1.38916 * 120.01936 * 359.74731 * 9 8 7 20 20 C 1.37990 * 120.00486 * 359.97438 * 19 9 8 21 21 C 1.38752 * 119.14267 * 359.72782 * 4 3 2 22 22 N 1.31930 * 120.72125 * 0.02762 * 21 4 3 23 23 C 1.32223 * 121.72695 * 359.97438 * 22 21 4 24 24 O 1.35769 * 119.60310 * 180.02562 * 23 22 21 25 25 C 1.42903 * 117.00078 * 359.97438 * 24 23 22 26 26 C 1.53008 * 109.47103 * 89.99705 * 25 24 23 27 27 C 1.52995 * 109.47513 * 210.00156 * 25 24 23 28 28 H 1.08996 * 109.47104 * 270.22711 * 1 2 3 29 29 H 1.09010 * 109.46616 * 30.22600 * 1 2 3 30 30 H 1.08999 * 109.47009 * 150.22457 * 1 2 3 31 31 H 1.07991 * 120.79329 * 359.97438 * 3 2 1 32 32 H 0.97000 * 120.00343 * 334.28672 * 5 4 3 33 33 H 1.08003 * 120.00326 * 0.02777 * 7 6 5 34 34 H 1.08007 * 119.99512 * 180.25030 * 8 7 6 35 35 H 0.96995 * 120.00553 * 180.02562 * 14 13 11 36 36 H 1.07993 * 119.99898 * 179.97438 * 19 9 8 37 37 H 1.07999 * 120.00466 * 179.97438 * 20 19 9 38 38 H 1.07990 * 119.64095 * 179.97438 * 21 4 3 39 39 H 1.09000 * 109.46805 * 330.00662 * 25 24 23 40 40 H 1.08995 * 109.46544 * 60.00290 * 26 25 24 41 41 H 1.08999 * 109.46818 * 180.02562 * 26 25 24 42 42 H 1.08994 * 109.47056 * 300.00466 * 26 25 24 43 43 H 1.09008 * 109.47041 * 299.99688 * 27 25 24 44 44 H 1.09001 * 109.47382 * 59.99730 * 27 25 24 45 45 H 1.09003 * 109.47320 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2073 1.1934 0.0000 4 6 3.6002 1.1451 -0.0061 5 7 4.3504 2.3266 -0.0125 6 6 5.6481 2.3332 0.5068 7 6 5.9826 1.4813 1.5527 8 6 7.2651 1.4847 2.0619 9 6 8.2189 2.3469 1.5363 10 8 9.4794 2.3541 2.0414 11 6 10.3155 3.3090 1.5870 12 1 10.0007 3.9685 0.7917 13 6 11.5790 3.4444 2.1403 14 7 11.9624 2.6412 3.1096 15 14 12.7379 4.7671 1.5102 16 1 12.0728 5.5317 0.4246 17 1 13.0891 5.6877 2.6212 18 1 13.9730 4.1330 0.9834 19 6 7.8836 3.2024 0.4944 20 6 6.6028 3.1955 -0.0191 21 6 4.2335 -0.0895 -0.0062 22 7 3.5319 -1.2068 -0.0012 23 6 2.2097 -1.1976 0.0047 24 8 1.5309 -2.3734 0.0103 25 6 2.3092 -3.5719 0.0089 26 6 2.5940 -3.9968 1.4510 27 6 1.5359 -4.6815 -0.7064 28 1 -0.3633 0.0041 1.0276 29 1 -0.3633 0.8881 -0.5174 30 1 -0.3633 -0.8920 -0.5103 31 1 1.6869 2.1397 -0.0004 32 1 3.9699 3.1409 -0.3772 33 1 5.2399 0.8137 1.9641 34 1 7.5262 0.8198 2.8720 35 1 12.8465 2.7362 3.4971 36 1 8.6253 3.8729 0.0863 37 1 6.3420 3.8609 -0.8288 38 1 5.3123 -0.1364 -0.0114 39 1 3.2510 -3.3929 -0.5097 40 1 1.6522 -4.1757 1.9696 41 1 3.1880 -4.9107 1.4498 42 1 3.1449 -3.2063 1.9605 43 1 0.5940 -4.8605 -0.1876 44 1 1.3330 -4.3788 -1.7337 45 1 2.1294 -5.5958 -0.7071 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212608277.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:20:52 Heat of formation + Delta-G solvation = -3.543279 kcal Electronic energy + Delta-G solvation = -26708.337257 eV Core-core repulsion = 22884.923316 eV Total energy + Delta-G solvation = -3823.413941 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.84127 -39.33832 -38.40220 -37.00834 -34.69158 -33.83811 -32.89098 -32.21382 -30.47775 -29.68472 -27.50773 -27.20104 -27.04261 -25.25596 -23.97225 -22.27292 -22.01700 -21.14918 -20.65245 -18.43675 -18.07082 -17.54749 -17.13180 -16.26965 -15.99983 -15.76063 -14.72188 -14.64422 -14.52057 -14.32752 -14.07410 -13.76677 -13.57165 -13.44708 -13.18558 -12.96570 -12.87336 -12.83838 -12.64294 -12.48606 -12.45289 -12.15761 -12.07818 -11.88592 -11.62997 -11.40735 -11.18083 -11.01195 -10.88454 -10.74366 -10.45873 -10.16339 -9.57254 -9.39374 -9.31663 -8.80535 -8.32963 -7.86207 -6.59367 -6.46184 -4.03993 1.14309 1.33226 2.06382 2.33327 3.04441 3.10801 3.12380 3.17835 3.51694 3.80911 3.94992 4.41060 4.50389 4.72081 4.82183 4.84270 4.89990 4.95634 5.06322 5.12586 5.23270 5.25729 5.37332 5.47902 5.50449 5.53179 5.55793 5.60757 5.64450 5.69285 5.78348 5.91618 6.02232 6.06818 6.09201 6.12498 6.15357 6.34587 6.46840 6.71808 6.79960 6.96589 7.17942 7.26953 7.34481 7.47097 7.72962 7.90578 7.97803 8.01098 8.99190 9.69200 10.71704 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.020662 B = 0.002315 C = 0.002142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.832059 B =12093.059039 C =13069.897627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.119 4.119 3 C -0.113 4.113 4 C 0.126 3.874 5 N -0.675 5.675 6 C 0.068 3.932 7 C -0.109 4.109 8 C -0.163 4.163 9 C 0.136 3.864 10 O -0.178 6.178 11 C -0.390 4.390 12 H 0.092 0.908 13 C 0.038 3.962 14 N -0.862 5.862 15 Si 0.940 3.060 16 H -0.267 1.267 17 H -0.276 1.276 18 H -0.276 1.276 19 C -0.207 4.207 20 C -0.104 4.104 21 C 0.083 3.917 22 N -0.503 5.503 23 C 0.269 3.731 24 O -0.305 6.305 25 C 0.082 3.918 26 C -0.168 4.168 27 C -0.149 4.149 28 H 0.069 0.931 29 H 0.064 0.936 30 H 0.071 0.929 31 H 0.137 0.863 32 H 0.403 0.597 33 H 0.114 0.886 34 H 0.121 0.879 35 H 0.269 0.731 36 H 0.131 0.869 37 H 0.110 0.890 38 H 0.164 0.836 39 H 0.088 0.912 40 H 0.058 0.942 41 H 0.068 0.932 42 H 0.062 0.938 43 H 0.062 0.938 44 H 0.061 0.939 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.823 -6.388 -7.191 22.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.122 4.122 3 C -0.143 4.143 4 C 0.023 3.977 5 N -0.299 5.299 6 C -0.027 4.027 7 C -0.130 4.130 8 C -0.182 4.182 9 C 0.082 3.918 10 O -0.082 6.082 11 C -0.467 4.467 12 H 0.109 0.891 13 C -0.166 4.166 14 N -0.497 5.497 15 Si 0.765 3.235 16 H -0.191 1.191 17 H -0.202 1.202 18 H -0.202 1.202 19 C -0.227 4.227 20 C -0.125 4.125 21 C -0.077 4.077 22 N -0.224 5.224 23 C 0.090 3.910 24 O -0.213 6.213 25 C 0.026 3.974 26 C -0.225 4.225 27 C -0.206 4.206 28 H 0.087 0.913 29 H 0.083 0.917 30 H 0.090 0.910 31 H 0.155 0.845 32 H 0.238 0.762 33 H 0.132 0.868 34 H 0.139 0.861 35 H 0.079 0.921 36 H 0.149 0.851 37 H 0.128 0.872 38 H 0.181 0.819 39 H 0.106 0.894 40 H 0.077 0.923 41 H 0.087 0.913 42 H 0.081 0.919 43 H 0.081 0.919 44 H 0.080 0.920 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -20.230 -7.506 -6.822 22.630 hybrid contribution 0.318 1.803 -0.431 1.881 sum -19.911 -5.703 -7.253 21.945 Atomic orbital electron populations 1.20558 0.89926 1.02749 1.02364 1.19621 0.97167 0.90108 1.05303 1.20897 0.91864 0.97904 1.03593 1.18629 0.90840 0.88303 0.99904 1.41698 1.13145 1.08636 1.66470 1.17242 0.84372 1.03208 0.97829 1.20478 0.96082 1.00831 0.95630 1.20071 0.91693 1.03072 1.03400 1.19349 0.86297 0.93725 0.92383 1.83989 1.15982 1.48964 1.59265 1.21338 0.94627 1.11218 1.19467 0.89080 1.25279 0.97029 0.98344 0.95933 1.70056 1.19917 1.36260 1.23505 0.85657 0.79666 0.79490 0.78663 1.19135 1.20161 1.20157 1.21013 0.96690 1.04263 1.00705 1.20448 0.92233 1.00273 0.99520 1.22342 1.00180 0.85307 0.99884 1.67173 1.06674 1.31799 1.16733 1.19367 0.87454 0.85993 0.98227 1.86234 1.34723 1.11850 1.88516 1.22247 0.95713 0.82410 0.97072 1.22204 1.01978 1.02055 0.96284 1.21892 1.00977 0.97101 1.00656 0.91266 0.91702 0.90967 0.84487 0.76187 0.86784 0.86094 0.92070 0.85140 0.87162 0.81909 0.89431 0.92277 0.91333 0.91884 0.91866 0.92019 0.90713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.87 9.81 36.01 0.35 -0.52 16 2 C -0.12 -1.39 5.91 -104.34 -0.62 -2.01 16 3 C -0.11 -1.28 9.77 -39.11 -0.38 -1.67 16 4 C 0.13 1.67 6.07 -83.53 -0.51 1.16 16 5 N -0.67 -8.86 5.48 -8.24 -0.05 -8.91 16 6 C 0.07 1.10 5.95 -83.69 -0.50 0.61 16 7 C -0.11 -1.92 7.75 -39.40 -0.31 -2.22 16 8 C -0.16 -3.32 9.98 -39.42 -0.39 -3.72 16 9 C 0.14 3.17 6.65 -39.08 -0.26 2.91 16 10 O -0.18 -4.97 9.76 -0.03 0.00 -4.97 16 11 C -0.39 -10.66 9.48 30.87 0.29 -10.37 16 12 H 0.09 2.29 5.21 -52.49 -0.27 2.02 16 13 C 0.04 1.04 5.49 -17.52 -0.10 0.94 16 14 N -0.86 -25.04 13.67 55.48 0.76 -24.28 16 15 Si 0.94 20.22 29.55 -169.99 -5.02 15.20 16 16 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 17 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 18 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 19 C -0.21 -4.26 9.16 -39.42 -0.36 -4.62 16 20 C -0.10 -1.78 9.95 -39.40 -0.39 -2.17 16 21 C 0.08 1.22 9.02 -17.32 -0.16 1.06 16 22 N -0.50 -7.32 8.63 -13.16 -0.11 -7.44 16 23 C 0.27 3.63 7.43 -17.15 -0.13 3.50 16 24 O -0.30 -3.79 8.82 -19.02 -0.17 -3.95 16 25 C 0.08 0.88 3.11 -26.73 -0.08 0.79 16 26 C -0.17 -1.67 9.53 37.16 0.35 -1.32 16 27 C -0.15 -1.19 9.56 37.15 0.36 -0.83 16 28 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.46 8.10 -51.92 -0.42 0.04 16 30 H 0.07 0.64 7.54 -51.93 -0.39 0.25 16 31 H 0.14 1.20 8.06 -52.49 -0.42 0.78 16 32 H 0.40 4.30 8.90 -40.82 -0.36 3.93 16 33 H 0.11 1.86 6.53 -52.48 -0.34 1.52 16 34 H 0.12 2.41 8.06 -52.48 -0.42 1.99 16 35 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 36 H 0.13 2.69 5.65 -52.49 -0.30 2.40 16 37 H 0.11 1.58 8.06 -52.49 -0.42 1.15 16 38 H 0.16 2.52 6.32 -52.49 -0.33 2.19 16 39 H 0.09 1.05 6.98 -51.93 -0.36 0.68 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.06 0.47 8.14 -51.92 -0.42 0.05 16 44 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 376.57 15.07 5.67 5.67 Total: -1.00 -30.52 376.57 -7.88 -38.40 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: -6.15 Total: 8.75 kcal Atomic # 6 Polarization: -15.65 SS G_CDS: -2.82 Total: -18.47 kcal Atomic # 7 Polarization: -41.23 SS G_CDS: 0.60 Total: -40.63 kcal Atomic # 8 Polarization: -8.76 SS G_CDS: -0.17 Total: -8.92 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -30.52 -7.88 -38.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212608277.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.860 kcal (2) G-P(sol) polarization free energy of solvation -30.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds