Wall clock time and date at job start Tue Mar 31 2020 15:20:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38370 * 120.40181 * 2 1 4 4 C 1.39378 * 118.41317 * 180.28680 * 3 2 1 5 5 N 1.39963 * 120.42602 * 179.71192 * 4 3 2 6 6 C 1.39767 * 119.99786 * 154.29050 * 5 4 3 7 7 C 1.38983 * 120.00919 * 328.86420 * 6 5 4 8 8 C 1.37989 * 119.99199 * 179.76604 * 7 6 5 9 9 C 1.38912 * 120.00679 * 0.50739 * 8 7 6 10 10 O 1.35792 * 119.99142 * 179.71825 * 9 8 7 11 11 C 1.34811 * 116.99992 * 186.86863 * 10 9 8 12 12 H 1.07999 * 119.99960 * 354.60937 * 11 10 9 13 13 C 1.38605 * 119.99935 * 174.61011 * 11 10 9 14 14 N 1.31587 * 120.00553 * 359.97438 * 13 11 10 15 15 Si 1.86809 * 120.00091 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.46908 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.46850 * 119.99957 * 15 13 11 18 18 H 1.48496 * 109.46855 * 239.99987 * 15 13 11 19 19 C 1.38916 * 120.01936 * 359.74731 * 9 8 7 20 20 C 1.37990 * 120.00486 * 359.97438 * 19 9 8 21 21 C 1.38752 * 119.14267 * 359.72782 * 4 3 2 22 22 N 1.31930 * 120.72125 * 0.02762 * 21 4 3 23 23 C 1.32223 * 121.72695 * 359.97438 * 22 21 4 24 24 O 1.35769 * 119.60310 * 180.02562 * 23 22 21 25 25 C 1.42903 * 117.00078 * 359.97438 * 24 23 22 26 26 C 1.53008 * 109.47103 * 89.99705 * 25 24 23 27 27 C 1.52995 * 109.47513 * 210.00156 * 25 24 23 28 28 H 1.08996 * 109.47104 * 270.22711 * 1 2 3 29 29 H 1.09010 * 109.46616 * 30.22600 * 1 2 3 30 30 H 1.08999 * 109.47009 * 150.22457 * 1 2 3 31 31 H 1.07991 * 120.79329 * 359.97438 * 3 2 1 32 32 H 0.97000 * 120.00343 * 334.28672 * 5 4 3 33 33 H 1.08003 * 120.00326 * 0.02777 * 7 6 5 34 34 H 1.08007 * 119.99512 * 180.25030 * 8 7 6 35 35 H 0.96995 * 120.00553 * 180.02562 * 14 13 11 36 36 H 1.07993 * 119.99898 * 179.97438 * 19 9 8 37 37 H 1.07999 * 120.00466 * 179.97438 * 20 19 9 38 38 H 1.07990 * 119.64095 * 179.97438 * 21 4 3 39 39 H 1.09000 * 109.46805 * 330.00662 * 25 24 23 40 40 H 1.08995 * 109.46544 * 60.00290 * 26 25 24 41 41 H 1.08999 * 109.46818 * 180.02562 * 26 25 24 42 42 H 1.08994 * 109.47056 * 300.00466 * 26 25 24 43 43 H 1.09008 * 109.47041 * 299.99688 * 27 25 24 44 44 H 1.09001 * 109.47382 * 59.99730 * 27 25 24 45 45 H 1.09003 * 109.47320 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2073 1.1934 0.0000 4 6 3.6002 1.1451 -0.0061 5 7 4.3504 2.3266 -0.0125 6 6 5.6481 2.3332 0.5068 7 6 5.9826 1.4813 1.5527 8 6 7.2651 1.4847 2.0619 9 6 8.2189 2.3469 1.5363 10 8 9.4794 2.3541 2.0414 11 6 10.3155 3.3090 1.5870 12 1 10.0007 3.9685 0.7917 13 6 11.5790 3.4444 2.1403 14 7 11.9624 2.6412 3.1096 15 14 12.7379 4.7671 1.5102 16 1 12.0728 5.5317 0.4246 17 1 13.0891 5.6877 2.6212 18 1 13.9730 4.1330 0.9834 19 6 7.8836 3.2024 0.4944 20 6 6.6028 3.1955 -0.0191 21 6 4.2335 -0.0895 -0.0062 22 7 3.5319 -1.2068 -0.0012 23 6 2.2097 -1.1976 0.0047 24 8 1.5309 -2.3734 0.0103 25 6 2.3092 -3.5719 0.0089 26 6 2.5940 -3.9968 1.4510 27 6 1.5359 -4.6815 -0.7064 28 1 -0.3633 0.0041 1.0276 29 1 -0.3633 0.8881 -0.5174 30 1 -0.3633 -0.8920 -0.5103 31 1 1.6869 2.1397 -0.0004 32 1 3.9699 3.1409 -0.3772 33 1 5.2399 0.8137 1.9641 34 1 7.5262 0.8198 2.8720 35 1 12.8465 2.7362 3.4971 36 1 8.6253 3.8729 0.0863 37 1 6.3420 3.8609 -0.8288 38 1 5.3123 -0.1364 -0.0114 39 1 3.2510 -3.3929 -0.5097 40 1 1.6522 -4.1757 1.9696 41 1 3.1880 -4.9107 1.4498 42 1 3.1449 -3.2063 1.9605 43 1 0.5940 -4.8605 -0.1876 44 1 1.3330 -4.3788 -1.7337 45 1 2.1294 -5.5958 -0.7071 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212608277.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:20:52 Heat of formation + Delta-G solvation = -22.467292 kcal Electronic energy + Delta-G solvation = -26709.157864 eV Core-core repulsion = 22884.923316 eV Total energy + Delta-G solvation = -3824.234548 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.88450 -40.83279 -39.62232 -38.44011 -36.02432 -34.77610 -34.20360 -33.70256 -31.99757 -30.90658 -28.70955 -28.19613 -27.93968 -27.12253 -24.98726 -23.67291 -23.36821 -22.17792 -21.88603 -19.86343 -19.38014 -19.00607 -18.47857 -17.62116 -17.22430 -16.71418 -16.29687 -16.02804 -15.62671 -15.51815 -15.46462 -15.34732 -14.74775 -14.51683 -14.38383 -14.25775 -14.04273 -13.81658 -13.71441 -13.54192 -13.38613 -13.18907 -13.16481 -13.11999 -12.88038 -12.75673 -12.64315 -12.39875 -12.08252 -12.02194 -11.78472 -11.36092 -11.14503 -10.77937 -10.57321 -10.25688 -9.86478 -9.20108 -8.43582 -7.96517 -6.09193 0.11298 0.26334 0.50488 0.85172 1.37261 1.45351 1.55320 2.11726 2.19831 2.38449 2.72578 2.88324 3.17224 3.40493 3.55518 3.89192 3.89925 3.94536 4.05066 4.07403 4.09035 4.11098 4.30931 4.42876 4.46593 4.50355 4.63748 4.70300 4.83012 4.84623 4.86294 4.87765 4.92485 5.02080 5.06374 5.12798 5.19745 5.23558 5.27455 5.27889 5.39849 5.44140 5.54648 5.68280 5.89222 6.05350 6.31295 6.47471 6.77441 6.96783 7.01611 7.83879 8.80251 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.020662 B = 0.002315 C = 0.002142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.832059 B =12093.059039 C =13069.897627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.119 4.119 3 C -0.096 4.096 4 C 0.116 3.884 5 N -0.664 5.664 6 C 0.104 3.896 7 C -0.107 4.107 8 C -0.170 4.170 9 C 0.093 3.907 10 O -0.235 6.235 11 C -0.408 4.408 12 H 0.104 0.896 13 C -0.027 4.027 14 N -0.924 5.924 15 Si 1.018 2.982 16 H -0.249 1.249 17 H -0.271 1.271 18 H -0.271 1.271 19 C -0.207 4.207 20 C -0.100 4.100 21 C 0.063 3.937 22 N -0.522 5.522 23 C 0.258 3.742 24 O -0.308 6.308 25 C 0.075 3.925 26 C -0.163 4.163 27 C -0.142 4.142 28 H 0.078 0.922 29 H 0.089 0.911 30 H 0.069 0.931 31 H 0.173 0.827 32 H 0.421 0.579 33 H 0.128 0.872 34 H 0.113 0.887 35 H 0.271 0.729 36 H 0.127 0.873 37 H 0.151 0.849 38 H 0.146 0.854 39 H 0.069 0.931 40 H 0.067 0.933 41 H 0.083 0.917 42 H 0.038 0.962 43 H 0.071 0.929 44 H 0.061 0.939 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.514 -5.226 -9.215 26.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.122 4.122 3 C -0.125 4.125 4 C 0.015 3.985 5 N -0.291 5.291 6 C 0.008 3.992 7 C -0.128 4.128 8 C -0.190 4.190 9 C 0.043 3.957 10 O -0.142 6.142 11 C -0.484 4.484 12 H 0.122 0.878 13 C -0.223 4.223 14 N -0.563 5.563 15 Si 0.838 3.162 16 H -0.172 1.172 17 H -0.196 1.196 18 H -0.196 1.196 19 C -0.227 4.227 20 C -0.121 4.121 21 C -0.096 4.096 22 N -0.244 5.244 23 C 0.078 3.922 24 O -0.217 6.217 25 C 0.019 3.981 26 C -0.221 4.221 27 C -0.200 4.200 28 H 0.096 0.904 29 H 0.107 0.893 30 H 0.088 0.912 31 H 0.191 0.809 32 H 0.260 0.740 33 H 0.146 0.854 34 H 0.131 0.869 35 H 0.080 0.920 36 H 0.145 0.855 37 H 0.168 0.832 38 H 0.163 0.837 39 H 0.088 0.912 40 H 0.086 0.914 41 H 0.102 0.898 42 H 0.057 0.943 43 H 0.090 0.910 44 H 0.080 0.920 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -24.020 -6.348 -8.890 26.387 hybrid contribution 0.968 1.243 0.092 1.578 sum -23.052 -5.106 -8.797 25.196 Atomic orbital electron populations 1.20627 0.87534 1.03909 1.03251 1.20062 0.98901 0.89486 1.03799 1.21252 0.90840 0.99254 1.01131 1.18648 0.91723 0.87464 1.00696 1.41543 1.11701 1.09603 1.66209 1.17304 0.85604 1.00571 0.95708 1.20569 0.94979 1.01352 0.95879 1.20193 0.92575 1.02668 1.03528 1.19812 0.85772 0.95919 0.94201 1.83952 1.17997 1.50602 1.61636 1.21851 0.95163 1.11531 1.19842 0.87838 1.26574 0.98724 1.00920 0.96127 1.70209 1.20731 1.39225 1.26094 0.84533 0.76964 0.76250 0.78491 1.17188 1.19571 1.19622 1.21114 0.98223 1.03409 0.99909 1.20737 0.90626 1.00776 0.99960 1.22178 0.99640 0.86272 1.01559 1.67100 1.07625 1.32149 1.17548 1.19769 0.87325 0.87100 0.98015 1.86238 1.34959 1.12071 1.88395 1.22426 0.95454 0.82650 0.97558 1.22171 1.02323 1.01850 0.95727 1.21878 1.01234 0.96571 1.00267 0.90375 0.89255 0.91162 0.80922 0.74012 0.85449 0.86910 0.92007 0.85536 0.83183 0.83708 0.91243 0.91366 0.89795 0.94295 0.91031 0.92024 0.89020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.32 9.81 71.24 0.70 -0.62 16 2 C -0.12 -2.41 5.91 -19.68 -0.12 -2.53 16 3 C -0.10 -1.78 9.77 22.58 0.22 -1.56 16 4 C 0.12 2.74 6.07 38.24 0.23 2.97 16 5 N -0.66 -14.97 5.48 -179.98 -0.99 -15.96 16 6 C 0.10 3.15 5.95 38.23 0.23 3.38 16 7 C -0.11 -3.70 7.75 22.39 0.17 -3.53 16 8 C -0.17 -7.25 9.98 22.37 0.22 -7.03 16 9 C 0.09 4.55 6.65 22.59 0.15 4.70 16 10 O -0.23 -14.01 9.76 -23.01 -0.22 -14.24 16 11 C -0.41 -23.41 9.48 67.91 0.64 -22.77 16 12 H 0.10 5.38 5.21 -2.91 -0.02 5.36 16 13 C -0.03 -1.50 5.49 84.82 0.47 -1.04 16 14 N -0.92 -56.91 13.67 21.61 0.30 -56.61 16 15 Si 1.02 42.59 29.55 68.60 2.03 44.61 16 16 H -0.25 -9.47 7.11 99.48 0.71 -8.77 16 17 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 18 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 19 C -0.21 -8.54 9.16 22.37 0.20 -8.34 16 20 C -0.10 -3.19 9.95 22.39 0.22 -2.97 16 21 C 0.06 1.78 9.02 84.80 0.77 2.55 16 22 N -0.52 -15.01 8.63 -308.38 -2.66 -17.67 16 23 C 0.26 6.57 7.43 84.78 0.63 7.20 16 24 O -0.31 -7.23 8.82 -90.96 -0.80 -8.03 16 25 C 0.08 1.54 3.11 30.60 0.10 1.64 16 26 C -0.16 -3.13 9.53 71.98 0.69 -2.45 16 27 C -0.14 -2.00 9.56 71.98 0.69 -1.32 16 28 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.09 0.82 8.10 -2.38 -0.02 0.80 16 30 H 0.07 1.02 7.54 -2.39 -0.02 1.00 16 31 H 0.17 1.97 8.06 -2.92 -0.02 1.95 16 32 H 0.42 6.85 8.90 -92.71 -0.83 6.03 16 33 H 0.13 4.09 6.53 -2.91 -0.02 4.07 16 34 H 0.11 4.86 8.06 -2.91 -0.02 4.83 16 35 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 36 H 0.13 5.26 5.65 -2.91 -0.02 5.25 16 37 H 0.15 3.62 8.06 -2.91 -0.02 3.60 16 38 H 0.15 4.53 6.32 -2.92 -0.02 4.51 16 39 H 0.07 1.67 6.98 -2.39 -0.02 1.65 16 40 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 43 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 44 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 45 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 Total: -1.00 -72.32 376.57 4.05 -68.27 By element: Atomic # 1 Polarization: 31.13 SS G_CDS: 0.20 Total: 31.33 kcal Atomic # 6 Polarization: -37.91 SS G_CDS: 6.21 Total: -31.70 kcal Atomic # 7 Polarization: -86.89 SS G_CDS: -3.35 Total: -90.24 kcal Atomic # 8 Polarization: -21.24 SS G_CDS: -1.03 Total: -22.27 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.61 kcal Total: -72.32 4.05 -68.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212608277.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.800 kcal (2) G-P(sol) polarization free energy of solvation -72.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds