Wall clock time and date at job start Tue Mar 31 2020 15:38:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30274 * 126.70134 * 2 1 4 4 O 1.20903 * 111.92713 * 180.29126 * 3 2 1 5 5 C 1.34494 * 111.44833 * 359.70915 * 4 3 2 6 6 C 1.47845 * 126.92587 * 180.02562 * 5 4 3 7 7 C 1.39562 * 120.14733 * 132.65042 * 6 5 4 8 8 C 1.37962 * 119.85572 * 179.76947 * 7 6 5 9 9 C 1.38357 * 120.14367 * 0.47846 * 8 7 6 10 10 C 1.38354 * 120.28850 * 359.77461 * 9 8 7 11 11 C 1.37963 * 120.14663 * 359.97438 * 10 9 8 12 12 C 1.36828 * 106.14969 * 359.97438 * 5 4 3 13 13 C 1.50696 * 128.05956 * 180.02562 * 12 5 4 14 14 O 1.42901 * 109.47073 * 93.68422 * 13 12 5 15 15 C 1.42906 * 113.99963 * 180.02562 * 14 13 12 16 16 H 1.08999 * 110.88799 * 32.42496 * 15 14 13 17 17 C 1.55157 * 111.00251 * 156.35177 * 15 14 13 18 18 C 1.54336 * 103.01882 * 153.38241 * 17 15 14 19 19 N 1.47022 * 107.26374 * 338.13686 * 18 17 15 20 20 C 1.36939 * 125.64580 * 178.85247 * 19 18 17 21 21 H 1.08003 * 119.99891 * 205.58068 * 20 19 18 22 22 C 1.38812 * 120.00304 * 25.57578 * 20 19 18 23 23 N 1.31618 * 119.99989 * 214.79154 * 22 20 19 24 24 Si 1.86798 * 119.99753 * 34.79164 * 22 20 19 25 25 H 1.48501 * 109.47133 * 359.97438 * 24 22 20 26 26 H 1.48499 * 109.46995 * 239.99950 * 24 22 20 27 27 H 1.48501 * 109.46936 * 120.00028 * 24 22 20 28 28 C 1.47422 * 108.70776 * 358.59046 * 19 18 17 29 29 H 1.08997 * 109.46960 * 270.18813 * 1 2 3 30 30 H 1.08999 * 109.47332 * 30.19381 * 1 2 3 31 31 H 1.09011 * 109.46538 * 150.19427 * 1 2 3 32 32 H 1.07997 * 120.07197 * 359.97438 * 7 6 5 33 33 H 1.08001 * 119.92865 * 180.25244 * 8 7 6 34 34 H 1.07999 * 119.85449 * 179.74756 * 9 8 7 35 35 H 1.08002 * 119.92723 * 179.97438 * 10 9 8 36 36 H 1.07995 * 120.07344 * 180.02562 * 11 10 9 37 37 H 1.09007 * 109.47178 * 333.68742 * 13 12 5 38 38 H 1.08992 * 109.47440 * 213.68934 * 13 12 5 39 39 H 1.08997 * 110.72021 * 271.93498 * 17 15 14 40 40 H 1.08995 * 110.72031 * 35.21414 * 17 15 14 41 41 H 1.09003 * 109.99267 * 218.66537 * 18 17 15 42 42 H 1.08997 * 109.78365 * 97.49374 * 18 17 15 43 43 H 0.96996 * 120.00362 * 5.65484 * 23 22 20 44 44 H 1.08993 * 110.37413 * 143.19402 * 28 19 18 45 45 H 1.09002 * 110.36154 * 265.52079 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2856 1.0445 0.0000 4 8 3.4546 0.7362 -0.0057 5 6 3.6109 -0.5996 -0.0040 6 6 4.8881 -1.3445 -0.0090 7 6 5.0860 -2.4023 0.8796 8 6 6.2783 -3.0963 0.8666 9 6 7.2803 -2.7393 -0.0181 10 6 7.0925 -1.6882 -0.8980 11 6 5.9030 -0.9894 -0.8987 12 6 2.3498 -1.1304 0.0043 13 6 1.9538 -2.5844 0.0099 14 8 1.7527 -3.0181 1.3566 15 6 1.3726 -4.3906 1.4746 16 1 1.8258 -4.9887 0.6841 17 6 1.7371 -4.9502 2.8751 18 6 0.7104 -6.0852 3.0740 19 7 -0.4258 -5.8068 2.1834 20 6 -1.5405 -6.5897 2.0434 21 1 -2.1081 -6.5618 1.1250 22 6 -1.9410 -7.4193 3.0818 23 7 -2.4878 -8.5870 2.8177 24 14 -1.7039 -6.8782 4.8539 25 1 -1.0715 -5.5349 4.8810 26 1 -0.8285 -7.8511 5.5555 27 1 -3.0227 -6.8189 5.5340 28 6 -0.1691 -4.5420 1.4707 29 1 -0.3633 0.0034 1.0276 30 1 -0.3634 0.8882 -0.5168 31 1 -0.3633 -0.8918 -0.5109 32 1 4.3062 -2.6791 1.5737 33 1 6.4311 -3.9177 1.5509 34 1 8.2134 -3.2832 -0.0215 35 1 7.8789 -1.4143 -1.5858 36 1 5.7575 -0.1694 -1.5864 37 1 2.7446 -3.1781 -0.4487 38 1 1.0302 -2.7116 -0.5545 39 1 2.7543 -5.3418 2.8811 40 1 1.6130 -4.1843 3.6406 41 1 0.3729 -6.1050 4.1103 42 1 1.1621 -7.0416 2.8108 43 1 -2.5364 -8.9039 1.9023 44 1 -0.5420 -4.6002 0.4482 45 1 -0.6334 -3.7086 1.9980 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001223757866.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:38:51 Heat of formation + Delta-G solvation = 69.096781 kcal Electronic energy + Delta-G solvation = -27664.584206 eV Core-core repulsion = 23844.320174 eV Total energy + Delta-G solvation = -3820.264032 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -45.03828 -39.42139 -38.65161 -36.49654 -34.91403 -33.55388 -32.44771 -31.30761 -30.26452 -29.47687 -28.83767 -27.89668 -26.76781 -23.75821 -23.50592 -22.89275 -21.67884 -20.67671 -20.43035 -20.23774 -17.94513 -17.80408 -17.51782 -16.79679 -16.58780 -15.91359 -15.52503 -15.12057 -14.56495 -14.51830 -14.30803 -13.92008 -13.73935 -13.48482 -13.38221 -13.33472 -13.10605 -12.81593 -12.77898 -12.43647 -12.24328 -11.90681 -11.69684 -11.47870 -11.40101 -11.26385 -10.96485 -10.84071 -10.57057 -10.35428 -10.04083 -10.01487 -9.57966 -9.36803 -9.28900 -9.27097 -8.81576 -8.35378 -7.00724 -6.41150 -3.28021 0.48595 1.05687 1.46581 1.96477 2.78373 3.45455 3.47578 3.54171 3.69820 3.78263 4.07108 4.22998 4.52147 4.60980 4.62396 4.62568 4.80026 4.86348 5.01462 5.06917 5.10039 5.18775 5.20865 5.23751 5.31171 5.42838 5.46494 5.49852 5.53182 5.55357 5.61841 5.67564 5.71391 5.85609 5.99498 6.08336 6.11276 6.12808 6.16559 6.23007 6.44769 6.56828 6.58179 6.65332 6.82183 7.39280 7.86552 8.06854 8.35447 8.96396 9.56158 10.29690 11.01574 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.014524 B = 0.003181 C = 0.002764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.319036 B = 8799.228568 C =10128.254421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.041 3.959 3 N -0.368 5.368 4 O 0.105 5.895 5 C 0.026 3.974 6 C -0.029 4.029 7 C -0.080 4.080 8 C -0.119 4.119 9 C -0.104 4.104 10 C -0.123 4.123 11 C -0.091 4.091 12 C -0.179 4.179 13 C 0.140 3.860 14 O -0.371 6.371 15 C 0.073 3.927 16 H 0.070 0.930 17 C -0.123 4.123 18 C 0.125 3.875 19 N -0.600 5.600 20 C -0.343 4.343 21 H 0.069 0.931 22 C 0.003 3.997 23 N -0.898 5.898 24 Si 1.032 2.968 25 H -0.278 1.278 26 H -0.292 1.292 27 H -0.296 1.296 28 C 0.110 3.890 29 H 0.086 0.914 30 H 0.076 0.924 31 H 0.084 0.916 32 H 0.139 0.861 33 H 0.131 0.869 34 H 0.126 0.874 35 H 0.128 0.872 36 H 0.128 0.872 37 H 0.062 0.938 38 H 0.066 0.934 39 H 0.070 0.930 40 H 0.074 0.926 41 H 0.034 0.966 42 H 0.037 0.963 43 H 0.268 0.732 44 H 0.041 0.959 45 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.888 15.039 -7.857 25.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.117 4.117 3 N -0.073 5.073 4 O 0.040 5.960 5 C -0.038 4.038 6 C -0.030 4.030 7 C -0.099 4.099 8 C -0.137 4.137 9 C -0.122 4.122 10 C -0.141 4.141 11 C -0.109 4.109 12 C -0.183 4.183 13 C 0.063 3.937 14 O -0.290 6.290 15 C 0.015 3.985 16 H 0.088 0.912 17 C -0.161 4.161 18 C 0.000 4.000 19 N -0.329 5.329 20 C -0.470 4.470 21 H 0.087 0.913 22 C -0.200 4.200 23 N -0.536 5.536 24 Si 0.862 3.138 25 H -0.204 1.204 26 H -0.219 1.219 27 H -0.224 1.224 28 C -0.016 4.016 29 H 0.105 0.895 30 H 0.095 0.905 31 H 0.103 0.897 32 H 0.157 0.843 33 H 0.149 0.851 34 H 0.144 0.856 35 H 0.146 0.854 36 H 0.146 0.854 37 H 0.080 0.920 38 H 0.084 0.916 39 H 0.089 0.911 40 H 0.093 0.907 41 H 0.051 0.949 42 H 0.055 0.945 43 H 0.078 0.922 44 H 0.059 0.941 45 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 18.274 16.005 -6.171 25.064 hybrid contribution 0.104 -0.402 -1.702 1.752 sum 18.378 15.603 -7.873 25.361 Atomic orbital electron populations 1.20223 0.85457 1.03741 1.04068 1.23350 0.99112 0.88019 1.01201 1.73809 0.89042 1.23794 1.20657 1.84936 1.21576 1.21826 1.67708 1.22311 0.94931 0.83661 1.02875 1.17601 0.89858 0.96422 0.99163 1.21436 0.97909 0.93556 0.96970 1.21161 0.93113 1.00035 0.99354 1.21368 0.99139 0.96683 0.95042 1.21086 0.97195 0.96286 0.99570 1.21270 0.92538 0.99344 0.97754 1.20863 0.90990 0.96866 1.09560 1.20430 1.00184 0.87444 0.85646 1.87938 1.89307 1.27325 1.24415 1.23393 0.96423 0.80670 0.98026 0.91162 1.22628 0.99049 0.98510 0.95911 1.21620 0.87745 0.95446 0.95221 1.44601 1.17887 1.21092 1.49338 1.19805 1.05811 1.20539 1.00851 0.91331 1.26044 0.96501 0.94142 1.03361 1.70860 1.45090 1.15064 1.22556 0.84345 0.75881 0.76074 0.77535 1.20436 1.21939 1.22415 1.22047 0.92298 0.90543 0.96745 0.89539 0.90533 0.89736 0.84343 0.85078 0.85580 0.85413 0.85419 0.92001 0.91600 0.91097 0.90734 0.94869 0.94464 0.92225 0.94089 0.95227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.83 10.38 36.01 0.37 -0.46 16 2 C 0.04 0.54 7.31 -82.21 -0.60 -0.06 16 3 N -0.37 -5.17 12.05 33.51 0.40 -4.76 16 4 O 0.10 1.39 11.22 15.96 0.18 1.57 16 5 C 0.03 0.32 6.89 -36.16 -0.25 0.07 16 6 C -0.03 -0.31 5.63 -104.98 -0.59 -0.90 16 7 C -0.08 -0.82 8.92 -39.19 -0.35 -1.17 16 8 C -0.12 -0.99 10.03 -39.64 -0.40 -1.39 16 9 C -0.10 -0.75 10.04 -39.50 -0.40 -1.15 16 10 C -0.12 -0.90 10.03 -39.64 -0.40 -1.29 16 11 C -0.09 -0.79 9.79 -39.19 -0.38 -1.17 16 12 C -0.18 -2.32 5.94 -104.09 -0.62 -2.93 16 13 C 0.14 1.78 5.50 36.00 0.20 1.97 16 14 O -0.37 -5.58 9.59 -35.23 -0.34 -5.92 16 15 C 0.07 1.20 3.49 -24.58 -0.09 1.12 16 16 H 0.07 1.09 7.90 -51.93 -0.41 0.68 16 17 C -0.12 -2.07 6.68 -24.89 -0.17 -2.24 16 18 C 0.12 2.68 6.04 -3.06 -0.02 2.67 16 19 N -0.60 -14.71 3.06 -170.07 -0.52 -15.24 16 20 C -0.34 -9.75 10.24 -15.06 -0.15 -9.90 16 21 H 0.07 2.06 8.06 -52.48 -0.42 1.64 16 22 C 0.00 0.10 5.29 -17.43 -0.09 0.01 16 23 N -0.90 -27.51 13.70 55.49 0.76 -26.75 16 24 Si 1.03 25.96 26.22 -169.99 -4.46 21.50 16 25 H -0.28 -6.68 6.18 56.52 0.35 -6.33 16 26 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 27 H -0.30 -7.45 7.11 56.52 0.40 -7.04 16 28 C 0.11 2.23 6.97 -2.53 -0.02 2.21 16 29 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.08 0.83 7.74 -51.92 -0.40 0.43 16 32 H 0.14 1.54 7.26 -52.49 -0.38 1.16 16 33 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 34 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 35 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 36 H 0.13 0.95 8.06 -52.49 -0.42 0.52 16 37 H 0.06 0.72 7.65 -51.92 -0.40 0.32 16 38 H 0.07 0.80 7.74 -51.93 -0.40 0.40 16 39 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 40 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 41 H 0.03 0.76 3.86 -51.93 -0.20 0.56 16 42 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.27 8.08 8.73 -40.82 -0.36 7.73 16 44 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 45 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 LS Contribution 373.57 15.07 5.63 5.63 Total: -1.00 -32.52 373.57 -8.76 -41.28 By element: Atomic # 1 Polarization: 3.78 SS G_CDS: -6.47 Total: -2.69 kcal Atomic # 6 Polarization: -10.67 SS G_CDS: -3.95 Total: -14.62 kcal Atomic # 7 Polarization: -47.39 SS G_CDS: 0.64 Total: -46.75 kcal Atomic # 8 Polarization: -4.20 SS G_CDS: -0.16 Total: -4.35 kcal Atomic # 14 Polarization: 25.96 SS G_CDS: -4.46 Total: 21.50 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.52 -8.76 -41.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223757866.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.375 kcal (2) G-P(sol) polarization free energy of solvation -32.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.278 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds