Wall clock time and date at job start Tue Mar 31 2020 15:38:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30274 * 126.70134 * 2 1 4 4 O 1.20903 * 111.92713 * 180.29126 * 3 2 1 5 5 C 1.34494 * 111.44833 * 359.70915 * 4 3 2 6 6 C 1.47845 * 126.92587 * 180.02562 * 5 4 3 7 7 C 1.39562 * 120.14733 * 132.65042 * 6 5 4 8 8 C 1.37962 * 119.85572 * 179.76947 * 7 6 5 9 9 C 1.38357 * 120.14367 * 0.47846 * 8 7 6 10 10 C 1.38354 * 120.28850 * 359.77461 * 9 8 7 11 11 C 1.37963 * 120.14663 * 359.97438 * 10 9 8 12 12 C 1.36828 * 106.14969 * 359.97438 * 5 4 3 13 13 C 1.50696 * 128.05956 * 180.02562 * 12 5 4 14 14 O 1.42901 * 109.47073 * 93.68422 * 13 12 5 15 15 C 1.42906 * 113.99963 * 180.02562 * 14 13 12 16 16 H 1.08999 * 110.88799 * 32.42496 * 15 14 13 17 17 C 1.55157 * 111.00251 * 156.35177 * 15 14 13 18 18 C 1.54336 * 103.01882 * 153.38241 * 17 15 14 19 19 N 1.47022 * 107.26374 * 338.13686 * 18 17 15 20 20 C 1.36939 * 125.64580 * 178.85247 * 19 18 17 21 21 H 1.08003 * 119.99891 * 205.58068 * 20 19 18 22 22 C 1.38812 * 120.00304 * 25.57578 * 20 19 18 23 23 N 1.31618 * 119.99989 * 214.79154 * 22 20 19 24 24 Si 1.86798 * 119.99753 * 34.79164 * 22 20 19 25 25 H 1.48501 * 109.47133 * 359.97438 * 24 22 20 26 26 H 1.48499 * 109.46995 * 239.99950 * 24 22 20 27 27 H 1.48501 * 109.46936 * 120.00028 * 24 22 20 28 28 C 1.47422 * 108.70776 * 358.59046 * 19 18 17 29 29 H 1.08997 * 109.46960 * 270.18813 * 1 2 3 30 30 H 1.08999 * 109.47332 * 30.19381 * 1 2 3 31 31 H 1.09011 * 109.46538 * 150.19427 * 1 2 3 32 32 H 1.07997 * 120.07197 * 359.97438 * 7 6 5 33 33 H 1.08001 * 119.92865 * 180.25244 * 8 7 6 34 34 H 1.07999 * 119.85449 * 179.74756 * 9 8 7 35 35 H 1.08002 * 119.92723 * 179.97438 * 10 9 8 36 36 H 1.07995 * 120.07344 * 180.02562 * 11 10 9 37 37 H 1.09007 * 109.47178 * 333.68742 * 13 12 5 38 38 H 1.08992 * 109.47440 * 213.68934 * 13 12 5 39 39 H 1.08997 * 110.72021 * 271.93498 * 17 15 14 40 40 H 1.08995 * 110.72031 * 35.21414 * 17 15 14 41 41 H 1.09003 * 109.99267 * 218.66537 * 18 17 15 42 42 H 1.08997 * 109.78365 * 97.49374 * 18 17 15 43 43 H 0.96996 * 120.00362 * 5.65484 * 23 22 20 44 44 H 1.08993 * 110.37413 * 143.19402 * 28 19 18 45 45 H 1.09002 * 110.36154 * 265.52079 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2856 1.0445 0.0000 4 8 3.4546 0.7362 -0.0057 5 6 3.6109 -0.5996 -0.0040 6 6 4.8881 -1.3445 -0.0090 7 6 5.0860 -2.4023 0.8796 8 6 6.2783 -3.0963 0.8666 9 6 7.2803 -2.7393 -0.0181 10 6 7.0925 -1.6882 -0.8980 11 6 5.9030 -0.9894 -0.8987 12 6 2.3498 -1.1304 0.0043 13 6 1.9538 -2.5844 0.0099 14 8 1.7527 -3.0181 1.3566 15 6 1.3726 -4.3906 1.4746 16 1 1.8258 -4.9887 0.6841 17 6 1.7371 -4.9502 2.8751 18 6 0.7104 -6.0852 3.0740 19 7 -0.4258 -5.8068 2.1834 20 6 -1.5405 -6.5897 2.0434 21 1 -2.1081 -6.5618 1.1250 22 6 -1.9410 -7.4193 3.0818 23 7 -2.4878 -8.5870 2.8177 24 14 -1.7039 -6.8782 4.8539 25 1 -1.0715 -5.5349 4.8810 26 1 -0.8285 -7.8511 5.5555 27 1 -3.0227 -6.8189 5.5340 28 6 -0.1691 -4.5420 1.4707 29 1 -0.3633 0.0034 1.0276 30 1 -0.3634 0.8882 -0.5168 31 1 -0.3633 -0.8918 -0.5109 32 1 4.3062 -2.6791 1.5737 33 1 6.4311 -3.9177 1.5509 34 1 8.2134 -3.2832 -0.0215 35 1 7.8789 -1.4143 -1.5858 36 1 5.7575 -0.1694 -1.5864 37 1 2.7446 -3.1781 -0.4487 38 1 1.0302 -2.7116 -0.5545 39 1 2.7543 -5.3418 2.8811 40 1 1.6130 -4.1843 3.6406 41 1 0.3729 -6.1050 4.1103 42 1 1.1621 -7.0416 2.8108 43 1 -2.5364 -8.9039 1.9023 44 1 -0.5420 -4.6002 0.4482 45 1 -0.6334 -3.7086 1.9980 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001223757866.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:38:50 Heat of formation + Delta-G solvation = 50.836161 kcal Electronic energy + Delta-G solvation = -27665.376046 eV Core-core repulsion = 23844.320174 eV Total energy + Delta-G solvation = -3821.055872 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -46.01490 -40.18965 -39.89362 -37.92541 -35.99672 -34.61514 -34.26640 -31.92593 -31.49983 -30.79662 -29.77637 -29.37995 -27.90213 -25.62522 -24.24428 -23.56914 -22.66270 -22.28155 -21.90662 -21.23262 -19.61159 -18.83797 -18.71894 -18.02085 -17.42980 -17.03028 -16.70203 -16.18903 -15.91903 -15.76877 -15.44807 -15.23693 -14.82996 -14.54212 -14.41271 -14.33953 -14.25948 -13.91292 -13.84182 -13.78661 -13.59262 -13.27368 -12.99305 -12.72695 -12.52331 -12.32927 -12.23943 -12.16935 -11.98323 -11.82599 -11.64233 -11.18314 -11.00411 -10.86735 -10.65603 -10.47152 -9.91614 -9.57416 -9.06987 -8.65851 -5.48767 -0.28787 0.44364 0.62983 0.97876 1.44903 1.52471 1.72686 1.91399 2.53552 2.61520 2.81095 2.95460 3.10074 3.36363 3.53053 3.58076 3.76367 3.88670 3.94519 4.01648 4.07694 4.10934 4.18700 4.29645 4.33251 4.40557 4.49824 4.55927 4.58707 4.60716 4.61955 4.71960 4.75182 4.81886 4.95145 4.96456 4.99674 5.04334 5.11076 5.13018 5.24483 5.45724 5.49830 5.56760 5.71004 5.98032 6.14401 6.19876 6.79619 7.10178 7.47174 8.18652 8.74986 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.014524 B = 0.003181 C = 0.002764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.319036 B = 8799.228568 C =10128.254421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.035 3.965 3 N -0.390 5.390 4 O 0.096 5.904 5 C 0.037 3.963 6 C -0.053 4.053 7 C -0.092 4.092 8 C -0.124 4.124 9 C -0.099 4.099 10 C -0.121 4.121 11 C -0.096 4.096 12 C -0.198 4.198 13 C 0.142 3.858 14 O -0.374 6.374 15 C 0.092 3.908 16 H 0.086 0.914 17 C -0.111 4.111 18 C 0.115 3.885 19 N -0.621 5.621 20 C -0.338 4.338 21 H 0.036 0.964 22 C -0.047 4.047 23 N -0.932 5.932 24 Si 1.079 2.921 25 H -0.261 1.261 26 H -0.281 1.281 27 H -0.297 1.297 28 C 0.105 3.895 29 H 0.085 0.915 30 H 0.088 0.912 31 H 0.091 0.909 32 H 0.126 0.874 33 H 0.148 0.852 34 H 0.154 0.846 35 H 0.155 0.845 36 H 0.135 0.865 37 H 0.076 0.924 38 H 0.070 0.930 39 H 0.108 0.892 40 H 0.078 0.922 41 H 0.026 0.974 42 H 0.033 0.967 43 H 0.256 0.744 44 H 0.038 0.962 45 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.960 15.833 -7.656 28.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.124 4.124 3 N -0.097 5.097 4 O 0.033 5.967 5 C -0.027 4.027 6 C -0.054 4.054 7 C -0.111 4.111 8 C -0.141 4.141 9 C -0.117 4.117 10 C -0.139 4.139 11 C -0.115 4.115 12 C -0.202 4.202 13 C 0.065 3.935 14 O -0.293 6.293 15 C 0.034 3.966 16 H 0.104 0.896 17 C -0.149 4.149 18 C -0.010 4.010 19 N -0.349 5.349 20 C -0.467 4.467 21 H 0.054 0.946 22 C -0.245 4.245 23 N -0.572 5.572 24 Si 0.904 3.096 25 H -0.187 1.187 26 H -0.207 1.207 27 H -0.224 1.224 28 C -0.020 4.020 29 H 0.103 0.897 30 H 0.107 0.893 31 H 0.110 0.890 32 H 0.144 0.856 33 H 0.165 0.835 34 H 0.172 0.828 35 H 0.173 0.827 36 H 0.153 0.847 37 H 0.094 0.906 38 H 0.088 0.912 39 H 0.127 0.873 40 H 0.097 0.903 41 H 0.043 0.957 42 H 0.051 0.949 43 H 0.065 0.935 44 H 0.057 0.943 45 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 21.385 16.831 -5.983 27.864 hybrid contribution -0.771 -0.606 -1.901 2.139 sum 20.614 16.225 -7.884 27.393 Atomic orbital electron populations 1.20308 0.84209 1.04737 1.04250 1.23748 1.00088 0.88026 1.00492 1.73798 0.89418 1.24474 1.22029 1.84904 1.21402 1.22474 1.67951 1.22695 0.95715 0.83251 1.01020 1.17719 0.89801 0.97126 1.00733 1.21411 0.98572 0.94023 0.97087 1.21411 0.92620 1.00228 0.99881 1.21749 0.99764 0.96300 0.93898 1.21440 0.97086 0.95696 0.99692 1.21462 0.92687 0.99789 0.97524 1.20932 0.91321 0.96889 1.11011 1.20517 1.00903 0.87515 0.84541 1.87938 1.88974 1.26331 1.26021 1.23090 0.93204 0.81796 0.98543 0.89623 1.22582 0.99444 0.96873 0.95966 1.21782 0.87855 0.97321 0.93999 1.44686 1.17619 1.22390 1.50232 1.19672 1.06741 1.20720 0.99528 0.94614 1.27104 0.96661 0.93802 1.06967 1.70955 1.47882 1.16565 1.21771 0.83690 0.76096 0.76676 0.73118 1.18669 1.20692 1.22447 1.22184 0.95637 0.88415 0.95812 0.89650 0.89344 0.88982 0.85570 0.83451 0.82824 0.82742 0.84661 0.90579 0.91165 0.87332 0.90348 0.95663 0.94921 0.93518 0.94350 0.95894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.62 10.38 71.24 0.74 -0.88 16 2 C 0.03 0.89 7.31 43.47 0.32 1.21 16 3 N -0.39 -10.89 12.05 -48.85 -0.59 -11.48 16 4 O 0.10 2.51 11.22 67.28 0.76 3.26 16 5 C 0.04 0.89 6.89 24.48 0.17 1.05 16 6 C -0.05 -1.04 5.63 -20.09 -0.11 -1.15 16 7 C -0.09 -1.71 8.92 22.52 0.20 -1.51 16 8 C -0.12 -1.70 10.03 22.23 0.22 -1.48 16 9 C -0.10 -1.07 10.04 22.33 0.22 -0.84 16 10 C -0.12 -1.36 10.03 22.23 0.22 -1.14 16 11 C -0.10 -1.48 9.79 22.53 0.22 -1.26 16 12 C -0.20 -4.94 5.94 -19.52 -0.12 -5.06 16 13 C 0.14 3.37 5.50 71.23 0.39 3.76 16 14 O -0.37 -10.47 9.59 -148.98 -1.43 -11.90 16 15 C 0.09 2.81 3.49 31.99 0.11 2.92 16 16 H 0.09 2.39 7.90 -2.39 -0.02 2.37 16 17 C -0.11 -3.38 6.68 31.79 0.21 -3.17 16 18 C 0.11 4.74 6.04 86.73 0.52 5.27 16 19 N -0.62 -30.16 3.06 -691.97 -2.12 -32.28 16 20 C -0.34 -19.60 10.24 84.03 0.86 -18.74 16 21 H 0.04 2.25 8.06 -2.91 -0.02 2.23 16 22 C -0.05 -2.77 5.29 84.86 0.45 -2.32 16 23 N -0.93 -58.51 13.70 21.65 0.30 -58.22 16 24 Si 1.08 52.59 26.22 68.60 1.80 54.39 16 25 H -0.26 -11.89 6.18 99.48 0.62 -11.27 16 26 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 27 H -0.30 -14.37 7.11 99.48 0.71 -13.67 16 28 C 0.11 4.18 6.97 86.86 0.61 4.78 16 29 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.09 1.74 7.74 -2.38 -0.02 1.72 16 32 H 0.13 2.60 7.26 -2.91 -0.02 2.58 16 33 H 0.15 1.48 8.06 -2.91 -0.02 1.45 16 34 H 0.15 0.80 8.06 -2.91 -0.02 0.77 16 35 H 0.15 0.87 8.06 -2.91 -0.02 0.85 16 36 H 0.14 1.78 8.06 -2.91 -0.02 1.76 16 37 H 0.08 1.60 7.65 -2.38 -0.02 1.58 16 38 H 0.07 1.60 7.74 -2.39 -0.02 1.58 16 39 H 0.11 2.54 8.14 -2.39 -0.02 2.52 16 40 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 41 H 0.03 1.10 3.86 -2.39 -0.01 1.09 16 42 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 43 H 0.26 16.08 8.73 -92.71 -0.81 15.27 16 44 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 45 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 Total: -1.00 -71.63 373.57 4.82 -66.81 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: 0.86 Total: 7.95 kcal Atomic # 6 Polarization: -23.80 SS G_CDS: 5.24 Total: -18.56 kcal Atomic # 7 Polarization: -99.56 SS G_CDS: -2.41 Total: -101.97 kcal Atomic # 8 Polarization: -7.96 SS G_CDS: -0.67 Total: -8.63 kcal Atomic # 14 Polarization: 52.59 SS G_CDS: 1.80 Total: 54.39 kcal Total: -71.63 4.82 -66.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223757866.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.651 kcal (2) G-P(sol) polarization free energy of solvation -71.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.815 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds