Wall clock time and date at job start Tue Mar 31 2020 14:45:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37766 * 120.04881 * 2 1 4 4 C 1.38961 * 120.09278 * 180.27458 * 3 2 1 5 5 O 1.35816 * 119.90723 * 179.74352 * 4 3 2 6 6 C 1.42898 * 117.00194 * 182.38633 * 5 4 3 7 7 C 1.52999 * 109.47013 * 84.03092 * 6 5 4 8 8 C 1.53000 * 109.46806 * 204.02899 * 6 5 4 9 9 C 1.38968 * 120.18933 * 359.72397 * 4 3 2 10 10 C 1.37762 * 120.09168 * 359.97438 * 9 4 3 11 11 C 1.50705 * 120.04451 * 180.02562 * 10 9 4 12 12 C 1.39745 * 119.90602 * 0.02562 * 10 9 4 13 13 C 1.47759 * 120.09094 * 180.02562 * 12 10 9 14 14 C 1.39211 * 120.25967 * 90.29262 * 13 12 10 15 15 C 1.37966 * 120.12663 * 180.27913 * 14 13 12 16 16 C 1.39215 * 120.65856 * 359.69421 * 15 14 13 17 17 F 1.35102 * 119.73977 * 180.02562 * 16 15 14 18 18 C 1.37604 * 120.51911 * 0.02562 * 16 15 14 19 19 C 1.40732 * 119.84338 * 0.02562 * 18 16 15 20 20 C 1.40850 * 120.31599 * 179.97438 * 19 18 16 21 21 H 1.08003 * 119.99700 * 150.32038 * 20 19 18 22 22 C 1.40031 * 120.00248 * 330.05258 * 20 19 18 23 23 N 1.30801 * 119.99637 * 349.79479 * 22 20 19 24 24 Si 1.86798 * 120.00056 * 169.79247 * 22 20 19 25 25 H 1.48501 * 109.47238 * 359.97438 * 24 22 20 26 26 H 1.48493 * 109.47409 * 120.00293 * 24 22 20 27 27 H 1.48508 * 109.46816 * 239.99827 * 24 22 20 28 28 H 1.09000 * 109.47119 * 270.27543 * 1 2 3 29 29 H 1.08998 * 109.47348 * 30.28048 * 1 2 3 30 30 H 1.09004 * 109.47214 * 150.28209 * 1 2 3 31 31 H 1.08000 * 119.94772 * 359.97438 * 3 2 1 32 32 H 1.08993 * 109.46858 * 324.02953 * 6 5 4 33 33 H 1.08998 * 109.47275 * 299.99770 * 7 6 5 34 34 H 1.08993 * 109.47422 * 60.00206 * 7 6 5 35 35 H 1.09000 * 109.46842 * 180.02562 * 7 6 5 36 36 H 1.08996 * 109.47586 * 59.99901 * 8 6 5 37 37 H 1.09000 * 109.46863 * 179.97438 * 8 6 5 38 38 H 1.08998 * 109.47142 * 299.99381 * 8 6 5 39 39 H 1.07998 * 119.95279 * 179.97438 * 9 4 3 40 40 H 1.08997 * 109.46909 * 269.98496 * 11 10 9 41 41 H 1.09003 * 109.46858 * 29.98746 * 11 10 9 42 42 H 1.08999 * 109.46815 * 149.98438 * 11 10 9 43 43 H 1.07994 * 119.93273 * 0.02562 * 14 13 12 44 44 H 1.08006 * 119.66606 * 179.71874 * 15 14 13 45 45 H 1.07998 * 120.07778 * 179.97438 * 18 16 15 46 46 H 0.97000 * 119.99758 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1968 1.1925 0.0000 4 6 3.5864 1.1936 -0.0058 5 8 4.2627 2.3714 -0.0110 6 6 5.6887 2.3005 -0.0698 7 6 6.1323 2.1522 -1.5265 8 6 6.2875 3.5799 0.5180 9 6 4.2862 -0.0071 -0.0058 10 6 3.6042 -1.2040 0.0005 11 6 4.3641 -2.5055 0.0011 12 6 2.2068 -1.2097 0.0063 13 6 1.4711 -2.4911 0.0136 14 6 1.1215 -3.0924 1.2195 15 6 0.4397 -4.2918 1.2231 16 6 0.0876 -4.9119 0.0274 17 9 -0.5804 -6.0859 0.0526 18 6 0.4146 -4.3383 -1.1799 19 6 1.1109 -3.1157 -1.2087 20 6 1.4511 -2.5201 -2.4389 21 1 1.5301 -1.4456 -2.5150 22 6 1.6925 -3.3212 -3.5617 23 7 1.7996 -4.6180 -3.4289 24 14 1.8614 -2.5379 -5.2491 25 1 1.7001 -1.0664 -5.1302 26 1 3.2032 -2.8458 -5.8057 27 1 0.8146 -3.0788 -6.1529 28 1 -0.3633 0.0049 1.0277 29 1 -0.3634 0.8874 -0.5182 30 1 -0.3634 -0.8925 -0.5095 31 1 1.6568 2.1278 -0.0004 32 1 6.0337 1.4407 0.5044 33 1 5.7057 1.2407 -1.9453 34 1 5.7874 3.0120 -2.1008 35 1 7.2200 2.0977 -1.5713 36 1 5.9715 3.6857 1.5557 37 1 7.3753 3.5257 0.4735 38 1 5.9426 4.4397 -0.0564 39 1 5.3661 -0.0018 -0.0107 40 1 4.5428 -2.8222 -1.0264 41 1 5.3181 -2.3689 0.5104 42 1 3.7810 -3.2664 0.5198 43 1 1.3882 -2.6212 2.1539 44 1 0.1762 -4.7541 2.1630 45 1 0.1383 -4.8257 -2.1032 46 1 1.9671 -5.1730 -4.2067 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001236079025.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:04 Heat of formation + Delta-G solvation = -65.820657 kcal Electronic energy + Delta-G solvation = -28269.445044 eV Core-core repulsion = 24423.410591 eV Total energy + Delta-G solvation = -3846.034453 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.158 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -47.66389 -40.01667 -38.36637 -36.64905 -33.75060 -33.35148 -32.85386 -30.92495 -29.76095 -28.41624 -27.43060 -26.37862 -26.24718 -25.20778 -22.54568 -21.42365 -21.19489 -19.96106 -19.43098 -17.59534 -17.39677 -15.98816 -15.80320 -15.58272 -15.24234 -14.94050 -14.63143 -14.34169 -14.15007 -13.77835 -13.39602 -13.18784 -12.94818 -12.68337 -12.63806 -12.56091 -12.53560 -12.36821 -12.30835 -12.07774 -11.98360 -11.65093 -11.63163 -11.31130 -11.23273 -11.17974 -10.94146 -10.84893 -10.56916 -10.42872 -10.16211 -10.06454 -9.91251 -9.61801 -9.33405 -8.06252 -7.58992 -7.34380 -7.25146 -6.83659 -4.53923 1.91889 2.04572 2.54756 2.73107 3.02503 3.08299 3.08882 3.43001 3.85733 4.28530 4.46668 4.73665 4.87894 5.01356 5.30122 5.31354 5.41877 5.44115 5.50149 5.61102 5.63556 5.65487 5.70476 5.77397 5.93353 5.98120 6.00985 6.12796 6.16340 6.19301 6.24746 6.30937 6.32275 6.38344 6.44347 6.67192 6.81828 6.87423 6.92837 6.94249 7.06044 7.14080 7.31780 7.43030 7.47591 7.61757 7.71365 7.84928 7.93283 8.13156 8.46999 8.71689 8.76915 10.07183 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.011738 B = 0.004510 C = 0.003754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2384.825169 B = 6207.568566 C = 7457.160842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.040 4.040 3 C -0.164 4.164 4 C 0.116 3.884 5 O -0.316 6.316 6 C 0.076 3.924 7 C -0.179 4.179 8 C -0.147 4.147 9 C -0.220 4.220 10 C -0.029 4.029 11 C -0.107 4.107 12 C -0.016 4.016 13 C -0.168 4.168 14 C -0.054 4.054 15 C -0.273 4.273 16 C 0.102 3.898 17 F -0.169 7.169 18 C -0.192 4.192 19 C 0.148 3.852 20 C -0.442 4.442 21 H 0.083 0.917 22 C 0.076 3.924 23 N -0.791 5.791 24 Si 0.905 3.095 25 H -0.258 1.258 26 H -0.273 1.273 27 H -0.271 1.271 28 H 0.064 0.936 29 H 0.056 0.944 30 H 0.080 0.920 31 H 0.119 0.881 32 H 0.073 0.927 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.067 0.933 36 H 0.063 0.937 37 H 0.072 0.928 38 H 0.064 0.936 39 H 0.120 0.880 40 H 0.073 0.927 41 H 0.049 0.951 42 H 0.074 0.926 43 H 0.097 0.903 44 H 0.099 0.901 45 H 0.130 0.870 46 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.305 9.837 3.816 12.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.040 4.040 3 C -0.183 4.183 4 C 0.072 3.928 5 O -0.231 6.231 6 C 0.020 3.980 7 C -0.237 4.237 8 C -0.204 4.204 9 C -0.238 4.238 10 C -0.029 4.029 11 C -0.164 4.164 12 C -0.016 4.016 13 C -0.170 4.170 14 C -0.072 4.072 15 C -0.293 4.293 16 C 0.083 3.917 17 F -0.148 7.148 18 C -0.212 4.212 19 C 0.145 3.855 20 C -0.471 4.471 21 H 0.102 0.898 22 C -0.143 4.143 23 N -0.416 5.416 24 Si 0.730 3.270 25 H -0.182 1.182 26 H -0.199 1.199 27 H -0.196 1.196 28 H 0.082 0.918 29 H 0.075 0.925 30 H 0.099 0.901 31 H 0.137 0.863 32 H 0.091 0.909 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.091 0.909 38 H 0.083 0.917 39 H 0.137 0.863 40 H 0.092 0.908 41 H 0.068 0.932 42 H 0.093 0.907 43 H 0.115 0.885 44 H 0.117 0.883 45 H 0.148 0.852 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 6.266 9.776 3.670 12.178 hybrid contribution 0.303 -0.166 -0.901 0.965 sum 6.569 9.610 2.768 11.965 Atomic orbital electron populations 1.20734 0.91113 1.02980 1.01711 1.19826 0.95828 0.91409 0.96930 1.20028 0.90564 0.98032 1.09653 1.18868 0.91492 0.84117 0.98324 1.86037 1.19385 1.28740 1.88945 1.22330 0.79489 0.99387 0.96799 1.22352 1.01495 1.03419 0.96412 1.21830 1.00276 0.96731 1.01535 1.20888 0.99250 0.91800 1.11880 1.19799 0.93181 0.94174 0.95750 1.20711 0.98149 0.94820 1.02712 1.18372 0.91337 0.92204 0.99730 1.18478 1.08409 0.97236 0.92877 1.20333 0.96883 0.94045 0.95941 1.20179 1.13631 1.00311 0.95176 1.17786 0.96497 0.82103 0.95291 1.91334 1.79063 1.46711 1.97658 1.21288 1.04616 0.99989 0.95321 1.17247 0.87086 0.89696 0.91490 1.19520 1.39881 0.95003 0.92705 0.89844 1.25938 0.92590 0.94559 1.01200 1.69778 1.34141 1.05257 1.32386 0.86278 0.78677 0.80862 0.81210 1.18184 1.19861 1.19618 0.91776 0.92458 0.90111 0.86294 0.90947 0.91497 0.91715 0.91449 0.91837 0.90879 0.91688 0.86272 0.90798 0.93209 0.90724 0.88477 0.88289 0.85204 0.90687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.85 9.62 36.01 0.35 -1.50 16 2 C -0.04 -0.74 5.91 -104.23 -0.62 -1.36 16 3 C -0.16 -2.87 9.62 -39.49 -0.38 -3.25 16 4 C 0.12 1.98 6.57 -39.04 -0.26 1.73 16 5 O -0.32 -4.85 9.80 -19.16 -0.19 -5.03 16 6 C 0.08 0.90 2.86 -26.73 -0.08 0.83 16 7 C -0.18 -2.00 9.26 37.16 0.34 -1.65 16 8 C -0.15 -1.34 9.56 37.16 0.36 -0.98 16 9 C -0.22 -3.73 8.00 -39.48 -0.32 -4.05 16 10 C -0.03 -0.55 5.91 -104.23 -0.62 -1.17 16 11 C -0.11 -1.94 9.62 36.01 0.35 -1.59 16 12 C -0.02 -0.33 4.09 -104.88 -0.43 -0.76 16 13 C -0.17 -3.69 2.48 -104.24 -0.26 -3.95 16 14 C -0.05 -1.13 9.48 -39.32 -0.37 -1.50 16 15 C -0.27 -5.94 10.01 -39.32 -0.39 -6.34 16 16 C 0.10 2.43 7.28 -39.45 -0.29 2.15 16 17 F -0.17 -3.93 17.26 2.25 0.04 -3.89 16 18 C -0.19 -4.81 8.61 -38.87 -0.33 -5.15 16 19 C 0.15 3.60 5.27 -106.56 -0.56 3.03 16 20 C -0.44 -10.85 8.43 -37.92 -0.32 -11.17 16 21 H 0.08 2.06 7.35 -52.48 -0.39 1.68 16 22 C 0.08 1.80 5.26 -17.32 -0.09 1.70 16 23 N -0.79 -19.47 10.89 55.55 0.60 -18.87 16 24 Si 0.91 18.24 29.57 -169.99 -5.03 13.21 16 25 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 26 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 27 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 28 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.06 0.85 8.09 -51.93 -0.42 0.43 16 30 H 0.08 1.54 6.85 -51.93 -0.36 1.19 16 31 H 0.12 1.87 8.06 -52.49 -0.42 1.44 16 32 H 0.07 0.84 5.97 -51.93 -0.31 0.53 16 33 H 0.07 0.87 7.36 -51.93 -0.38 0.48 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.12 1.75 5.65 -52.49 -0.30 1.46 16 40 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 41 H 0.05 0.74 8.09 -51.93 -0.42 0.32 16 42 H 0.07 1.45 6.85 -51.93 -0.36 1.09 16 43 H 0.10 1.83 8.06 -52.49 -0.42 1.41 16 44 H 0.10 1.96 8.06 -52.48 -0.42 1.53 16 45 H 0.13 3.42 6.29 -52.49 -0.33 3.09 16 46 H 0.28 6.37 8.30 -40.82 -0.34 6.04 16 LS Contribution 378.63 15.07 5.71 5.71 Total: -1.00 -26.18 378.63 -9.40 -35.58 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: -6.62 Total: 8.27 kcal Atomic # 6 Polarization: -31.06 SS G_CDS: -3.92 Total: -34.98 kcal Atomic # 7 Polarization: -19.47 SS G_CDS: 0.60 Total: -18.87 kcal Atomic # 8 Polarization: -4.85 SS G_CDS: -0.19 Total: -5.03 kcal Atomic # 9 Polarization: -3.93 SS G_CDS: 0.04 Total: -3.89 kcal Atomic # 14 Polarization: 18.24 SS G_CDS: -5.03 Total: 13.21 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -26.18 -9.40 -35.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236079025.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.239 kcal (2) G-P(sol) polarization free energy of solvation -26.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds