Wall clock time and date at job start Tue Mar 31 2020 14:45:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37766 * 120.04881 * 2 1 4 4 C 1.38961 * 120.09278 * 180.27458 * 3 2 1 5 5 O 1.35816 * 119.90723 * 179.74352 * 4 3 2 6 6 C 1.42898 * 117.00194 * 182.38633 * 5 4 3 7 7 C 1.52999 * 109.47013 * 84.03092 * 6 5 4 8 8 C 1.53000 * 109.46806 * 204.02899 * 6 5 4 9 9 C 1.38968 * 120.18933 * 359.72397 * 4 3 2 10 10 C 1.37762 * 120.09168 * 359.97438 * 9 4 3 11 11 C 1.50705 * 120.04451 * 180.02562 * 10 9 4 12 12 C 1.39745 * 119.90602 * 0.02562 * 10 9 4 13 13 C 1.47759 * 120.09094 * 180.02562 * 12 10 9 14 14 C 1.39211 * 120.25967 * 90.29262 * 13 12 10 15 15 C 1.37966 * 120.12663 * 180.27913 * 14 13 12 16 16 C 1.39215 * 120.65856 * 359.69421 * 15 14 13 17 17 F 1.35102 * 119.73977 * 180.02562 * 16 15 14 18 18 C 1.37604 * 120.51911 * 0.02562 * 16 15 14 19 19 C 1.40732 * 119.84338 * 0.02562 * 18 16 15 20 20 C 1.40850 * 120.31599 * 179.97438 * 19 18 16 21 21 H 1.08003 * 119.99700 * 150.32038 * 20 19 18 22 22 C 1.40031 * 120.00248 * 330.05258 * 20 19 18 23 23 N 1.30801 * 119.99637 * 349.79479 * 22 20 19 24 24 Si 1.86798 * 120.00056 * 169.79247 * 22 20 19 25 25 H 1.48501 * 109.47238 * 359.97438 * 24 22 20 26 26 H 1.48493 * 109.47409 * 120.00293 * 24 22 20 27 27 H 1.48508 * 109.46816 * 239.99827 * 24 22 20 28 28 H 1.09000 * 109.47119 * 270.27543 * 1 2 3 29 29 H 1.08998 * 109.47348 * 30.28048 * 1 2 3 30 30 H 1.09004 * 109.47214 * 150.28209 * 1 2 3 31 31 H 1.08000 * 119.94772 * 359.97438 * 3 2 1 32 32 H 1.08993 * 109.46858 * 324.02953 * 6 5 4 33 33 H 1.08998 * 109.47275 * 299.99770 * 7 6 5 34 34 H 1.08993 * 109.47422 * 60.00206 * 7 6 5 35 35 H 1.09000 * 109.46842 * 180.02562 * 7 6 5 36 36 H 1.08996 * 109.47586 * 59.99901 * 8 6 5 37 37 H 1.09000 * 109.46863 * 179.97438 * 8 6 5 38 38 H 1.08998 * 109.47142 * 299.99381 * 8 6 5 39 39 H 1.07998 * 119.95279 * 179.97438 * 9 4 3 40 40 H 1.08997 * 109.46909 * 269.98496 * 11 10 9 41 41 H 1.09003 * 109.46858 * 29.98746 * 11 10 9 42 42 H 1.08999 * 109.46815 * 149.98438 * 11 10 9 43 43 H 1.07994 * 119.93273 * 0.02562 * 14 13 12 44 44 H 1.08006 * 119.66606 * 179.71874 * 15 14 13 45 45 H 1.07998 * 120.07778 * 179.97438 * 18 16 15 46 46 H 0.97000 * 119.99758 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1968 1.1925 0.0000 4 6 3.5864 1.1936 -0.0058 5 8 4.2627 2.3714 -0.0110 6 6 5.6887 2.3005 -0.0698 7 6 6.1323 2.1522 -1.5265 8 6 6.2875 3.5799 0.5180 9 6 4.2862 -0.0071 -0.0058 10 6 3.6042 -1.2040 0.0005 11 6 4.3641 -2.5055 0.0011 12 6 2.2068 -1.2097 0.0063 13 6 1.4711 -2.4911 0.0136 14 6 1.1215 -3.0924 1.2195 15 6 0.4397 -4.2918 1.2231 16 6 0.0876 -4.9119 0.0274 17 9 -0.5804 -6.0859 0.0526 18 6 0.4146 -4.3383 -1.1799 19 6 1.1109 -3.1157 -1.2087 20 6 1.4511 -2.5201 -2.4389 21 1 1.5301 -1.4456 -2.5150 22 6 1.6925 -3.3212 -3.5617 23 7 1.7996 -4.6180 -3.4289 24 14 1.8614 -2.5379 -5.2491 25 1 1.7001 -1.0664 -5.1302 26 1 3.2032 -2.8458 -5.8057 27 1 0.8146 -3.0788 -6.1529 28 1 -0.3633 0.0049 1.0277 29 1 -0.3634 0.8874 -0.5182 30 1 -0.3634 -0.8925 -0.5095 31 1 1.6568 2.1278 -0.0004 32 1 6.0337 1.4407 0.5044 33 1 5.7057 1.2407 -1.9453 34 1 5.7874 3.0120 -2.1008 35 1 7.2200 2.0977 -1.5713 36 1 5.9715 3.6857 1.5557 37 1 7.3753 3.5257 0.4735 38 1 5.9426 4.4397 -0.0564 39 1 5.3661 -0.0018 -0.0107 40 1 4.5428 -2.8222 -1.0264 41 1 5.3181 -2.3689 0.5104 42 1 3.7810 -3.2664 0.5198 43 1 1.3882 -2.6212 2.1539 44 1 0.1762 -4.7541 2.1630 45 1 0.1383 -4.8257 -2.1032 46 1 1.9671 -5.1730 -4.2067 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001236079025.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:03 Heat of formation + Delta-G solvation = -74.635768 kcal Electronic energy + Delta-G solvation = -28269.827296 eV Core-core repulsion = 24423.410591 eV Total energy + Delta-G solvation = -3846.416704 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.158 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -49.53272 -41.31046 -39.82778 -38.19066 -35.54311 -34.53031 -34.09535 -32.40521 -31.55487 -29.96375 -28.28419 -27.96597 -27.55671 -26.90727 -23.84197 -23.10361 -22.65671 -21.46025 -20.75073 -19.42249 -18.57432 -17.77335 -17.21103 -17.04987 -16.71632 -16.41890 -16.27951 -16.18907 -15.31048 -15.01073 -14.90475 -14.63727 -14.51123 -14.24743 -13.96985 -13.90304 -13.81428 -13.67763 -13.48691 -13.35932 -13.20340 -13.13999 -12.98447 -12.85616 -12.68971 -12.48857 -12.28936 -12.20301 -12.13102 -11.94645 -11.61005 -11.57980 -11.38269 -11.16254 -11.11828 -9.45360 -9.40678 -9.08193 -8.72901 -8.60910 -6.40130 0.53072 0.62567 0.76201 0.94660 1.35812 1.44317 1.48761 2.17413 2.33978 2.66560 2.88082 3.54627 3.82789 3.85790 3.95642 3.99037 4.07696 4.14709 4.25519 4.30754 4.44136 4.53188 4.58452 4.64529 4.71031 4.76425 4.83957 4.84383 4.86882 4.90013 4.91465 4.96973 5.07012 5.10896 5.11269 5.19575 5.23544 5.29631 5.32731 5.44471 5.52524 5.54667 5.71813 5.81096 5.86038 5.99176 6.02299 6.09271 6.31332 6.60059 6.65812 6.89259 6.93878 8.30741 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.011738 B = 0.004510 C = 0.003754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2384.825169 B = 6207.568566 C = 7457.160842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.047 4.047 3 C -0.171 4.171 4 C 0.122 3.878 5 O -0.324 6.324 6 C 0.065 3.935 7 C -0.177 4.177 8 C -0.142 4.142 9 C -0.217 4.217 10 C -0.042 4.042 11 C -0.101 4.101 12 C -0.048 4.048 13 C -0.150 4.150 14 C -0.056 4.056 15 C -0.265 4.265 16 C 0.086 3.914 17 F -0.170 7.170 18 C -0.217 4.217 19 C 0.129 3.871 20 C -0.461 4.461 21 H 0.075 0.925 22 C 0.040 3.960 23 N -0.823 5.823 24 Si 0.967 3.033 25 H -0.260 1.260 26 H -0.267 1.267 27 H -0.265 1.265 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.052 0.948 31 H 0.137 0.863 32 H 0.077 0.923 33 H 0.044 0.956 34 H 0.063 0.937 35 H 0.093 0.907 36 H 0.063 0.937 37 H 0.098 0.902 38 H 0.065 0.935 39 H 0.143 0.857 40 H 0.055 0.945 41 H 0.081 0.919 42 H 0.055 0.945 43 H 0.124 0.876 44 H 0.124 0.876 45 H 0.108 0.892 46 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.947 12.130 4.642 15.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.047 4.047 3 C -0.189 4.189 4 C 0.077 3.923 5 O -0.238 6.238 6 C 0.010 3.990 7 C -0.235 4.235 8 C -0.199 4.199 9 C -0.235 4.235 10 C -0.042 4.042 11 C -0.157 4.157 12 C -0.048 4.048 13 C -0.152 4.152 14 C -0.074 4.074 15 C -0.285 4.285 16 C 0.067 3.933 17 F -0.149 7.149 18 C -0.237 4.237 19 C 0.126 3.874 20 C -0.490 4.490 21 H 0.093 0.907 22 C -0.176 4.176 23 N -0.449 5.449 24 Si 0.789 3.211 25 H -0.184 1.184 26 H -0.191 1.191 27 H -0.190 1.190 28 H 0.098 0.902 29 H 0.096 0.904 30 H 0.071 0.929 31 H 0.155 0.845 32 H 0.095 0.905 33 H 0.063 0.937 34 H 0.082 0.918 35 H 0.112 0.888 36 H 0.082 0.918 37 H 0.117 0.883 38 H 0.084 0.916 39 H 0.160 0.840 40 H 0.073 0.927 41 H 0.100 0.900 42 H 0.074 0.926 43 H 0.142 0.858 44 H 0.142 0.858 45 H 0.126 0.874 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 7.910 12.069 4.508 15.118 hybrid contribution -0.141 -0.791 -1.048 1.320 sum 7.769 11.279 3.460 14.126 Atomic orbital electron populations 1.20712 0.90334 1.02531 1.02584 1.19979 0.96573 0.91363 0.96796 1.20232 0.91136 0.98219 1.09343 1.18974 0.91655 0.84772 0.96910 1.86051 1.21464 1.27840 1.88488 1.22706 0.77628 1.01162 0.97544 1.22349 1.03126 1.02247 0.95732 1.21851 1.01663 0.95145 1.01226 1.21059 1.00410 0.91040 1.11011 1.19935 0.92910 0.95149 0.96248 1.20636 0.99401 0.94050 1.01641 1.18424 0.92067 0.91889 1.02415 1.18680 1.06710 0.97501 0.92288 1.20647 0.96235 0.93760 0.96787 1.20469 1.12505 1.00266 0.95285 1.17973 0.97167 0.82391 0.95749 1.91319 1.79122 1.46755 1.97683 1.21207 1.06377 1.01053 0.95085 1.17473 0.87434 0.89826 0.92684 1.19550 1.41238 0.94611 0.93633 0.90683 1.26627 0.91945 0.94827 1.04157 1.69840 1.35215 1.06376 1.33476 0.85360 0.78909 0.79688 0.77177 1.18361 1.19137 1.18978 0.90211 0.90446 0.92928 0.84541 0.90493 0.93659 0.91759 0.88808 0.91826 0.88309 0.91626 0.83985 0.92670 0.89979 0.92624 0.85817 0.85850 0.87429 0.90206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.49 9.62 71.24 0.68 -2.81 16 2 C -0.05 -1.72 5.91 -19.61 -0.12 -1.84 16 3 C -0.17 -5.69 9.62 22.33 0.21 -5.47 16 4 C 0.12 3.92 6.57 22.62 0.15 4.07 16 5 O -0.32 -9.13 9.80 -91.48 -0.90 -10.03 16 6 C 0.07 1.35 2.86 30.59 0.09 1.44 16 7 C -0.18 -3.48 9.26 71.98 0.67 -2.81 16 8 C -0.14 -2.11 9.56 71.98 0.69 -1.42 16 9 C -0.22 -6.99 8.00 22.33 0.18 -6.81 16 10 C -0.04 -1.58 5.91 -19.61 -0.12 -1.69 16 11 C -0.10 -3.60 9.62 71.24 0.69 -2.92 16 12 C -0.05 -1.92 4.09 -20.03 -0.08 -2.01 16 13 C -0.15 -6.66 2.48 -19.62 -0.05 -6.71 16 14 C -0.06 -2.32 9.48 22.44 0.21 -2.11 16 15 C -0.27 -11.42 10.01 22.44 0.22 -11.20 16 16 C 0.09 4.19 7.28 22.35 0.16 4.36 16 17 F -0.17 -8.07 17.26 44.97 0.78 -7.29 16 18 C -0.22 -11.38 8.61 22.73 0.20 -11.18 16 19 C 0.13 6.49 5.27 -21.12 -0.11 6.38 16 20 C -0.46 -23.47 8.43 23.34 0.20 -23.28 16 21 H 0.08 3.84 7.35 -2.91 -0.02 3.82 16 22 C 0.04 1.94 5.26 85.28 0.45 2.39 16 23 N -0.82 -42.17 10.89 21.84 0.24 -41.93 16 24 Si 0.97 38.08 29.57 68.60 2.03 40.11 16 25 H -0.26 -10.18 7.11 99.48 0.71 -9.48 16 26 H -0.27 -10.12 7.11 99.48 0.71 -9.41 16 27 H -0.27 -10.09 7.11 99.48 0.71 -9.38 16 28 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 29 H 0.08 2.20 8.09 -2.39 -0.02 2.18 16 30 H 0.05 2.04 6.85 -2.38 -0.02 2.02 16 31 H 0.14 3.97 8.06 -2.91 -0.02 3.95 16 32 H 0.08 1.53 5.97 -2.39 -0.01 1.52 16 33 H 0.04 1.08 7.36 -2.39 -0.02 1.07 16 34 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.14 3.81 5.65 -2.91 -0.02 3.80 16 40 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 41 H 0.08 2.32 8.09 -2.39 -0.02 2.30 16 42 H 0.05 2.16 6.85 -2.39 -0.02 2.15 16 43 H 0.12 4.43 8.06 -2.91 -0.02 4.41 16 44 H 0.12 4.65 8.06 -2.91 -0.02 4.63 16 45 H 0.11 6.04 6.29 -2.91 -0.02 6.02 16 46 H 0.29 13.45 8.30 -92.71 -0.77 12.68 16 Total: -1.00 -58.06 378.63 7.45 -50.61 By element: Atomic # 1 Polarization: 31.17 SS G_CDS: 0.99 Total: 32.15 kcal Atomic # 6 Polarization: -67.94 SS G_CDS: 4.32 Total: -63.62 kcal Atomic # 7 Polarization: -42.17 SS G_CDS: 0.24 Total: -41.93 kcal Atomic # 8 Polarization: -9.13 SS G_CDS: -0.90 Total: -10.03 kcal Atomic # 9 Polarization: -8.07 SS G_CDS: 0.78 Total: -7.29 kcal Atomic # 14 Polarization: 38.08 SS G_CDS: 2.03 Total: 40.11 kcal Total: -58.06 7.45 -50.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236079025.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.029 kcal (2) G-P(sol) polarization free energy of solvation -58.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds