Wall clock time and date at job start Tue Mar 31 2020 14:45:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.37906 * 120.02744 * 2 1 4 4 C 1.38831 * 120.06057 * 180.28010 * 3 2 1 5 5 O 1.35872 * 119.93688 * 179.72182 * 4 3 2 6 6 C 1.42903 * 117.00878 * 175.56231 * 5 4 3 7 7 C 1.53007 * 109.46940 * 84.46520 * 6 5 4 8 8 C 1.52994 * 109.47478 * 204.47215 * 6 5 4 9 9 C 1.38839 * 120.13233 * 359.69832 * 4 3 2 10 10 C 1.37901 * 120.06328 * 0.04310 * 9 4 3 11 11 C 1.50706 * 120.03098 * 179.97438 * 10 9 4 12 12 C 1.39379 * 119.93948 * 359.97438 * 10 9 4 13 13 C 1.48349 * 120.06867 * 179.97438 * 12 10 9 14 14 C 1.38672 * 120.02018 * 89.99774 * 13 12 10 15 15 C 1.40547 * 119.65757 * 179.72292 * 14 13 12 16 16 C 1.41342 * 120.15554 * 180.29592 * 15 14 13 17 17 H 1.08005 * 120.00189 * 334.54717 * 16 15 14 18 18 C 1.39891 * 120.00161 * 154.54644 * 16 15 14 19 19 N 1.30862 * 120.00188 * 342.77277 * 18 16 15 20 20 Si 1.86803 * 120.00243 * 162.77180 * 18 16 15 21 21 H 1.48502 * 109.46924 * 94.70726 * 20 18 16 22 22 H 1.48496 * 109.47287 * 214.70766 * 20 18 16 23 23 H 1.48496 * 109.46779 * 334.70891 * 20 18 16 24 24 C 1.40849 * 119.69221 * 0.27474 * 15 14 13 25 25 C 1.37568 * 120.02023 * 0.02562 * 24 15 14 26 26 C 1.38750 * 120.35015 * 359.97438 * 25 24 15 27 27 F 1.35100 * 119.84204 * 180.02562 * 26 25 24 28 28 H 1.09007 * 109.46864 * 270.25017 * 1 2 3 29 29 H 1.08992 * 109.47755 * 30.25484 * 1 2 3 30 30 H 1.09001 * 109.47051 * 150.25773 * 1 2 3 31 31 H 1.07992 * 119.97587 * 0.02562 * 3 2 1 32 32 H 1.09005 * 109.46602 * 324.47547 * 6 5 4 33 33 H 1.08996 * 109.46818 * 300.00657 * 7 6 5 34 34 H 1.09001 * 109.46317 * 60.00686 * 7 6 5 35 35 H 1.08996 * 109.46512 * 180.02562 * 7 6 5 36 36 H 1.08996 * 109.47341 * 59.99784 * 8 6 5 37 37 H 1.09006 * 109.46674 * 179.97438 * 8 6 5 38 38 H 1.08999 * 109.46925 * 299.99416 * 8 6 5 39 39 H 1.07999 * 119.96280 * 180.02562 * 9 4 3 40 40 H 1.08997 * 109.47271 * 269.98477 * 11 10 9 41 41 H 1.09006 * 109.46887 * 29.98647 * 11 10 9 42 42 H 1.08995 * 109.46784 * 149.97858 * 11 10 9 43 43 H 1.08006 * 120.17143 * 359.97438 * 14 13 12 44 44 H 0.97000 * 120.00642 * 180.02562 * 19 18 16 45 45 H 1.07995 * 119.98845 * 180.02562 * 24 15 14 46 46 H 1.07998 * 119.82276 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1972 1.1940 0.0000 4 6 3.5855 1.1948 -0.0059 5 8 4.2628 2.3726 -0.0116 6 6 5.6871 2.3026 0.0811 7 6 6.2785 2.0799 -1.3124 8 6 6.2256 3.6122 0.6604 9 6 4.2831 -0.0056 -0.0054 10 6 3.5984 -1.2026 -0.0001 11 6 4.3565 -2.5051 -0.0002 12 6 2.2047 -1.2067 0.0055 13 6 1.4652 -2.4927 0.0107 14 6 1.1241 -3.0920 1.2138 15 6 0.4184 -4.3075 1.2099 16 6 0.0600 -4.9243 2.4300 17 1 0.6367 -4.7314 3.3226 18 6 -1.0417 -5.7849 2.4816 19 7 -1.9319 -5.7664 1.5226 20 14 -1.2423 -6.9603 3.9195 21 1 -2.1184 -6.3413 4.9464 22 1 -1.8563 -8.2255 3.4427 23 1 0.0882 -7.2485 4.5125 24 6 0.0696 -4.9077 -0.0156 25 6 0.4199 -4.3050 -1.2016 26 6 1.1166 -3.1051 -1.1992 27 9 1.4550 -2.5219 -2.3699 28 1 -0.3633 0.0045 1.0277 29 1 -0.3634 0.8876 -0.5177 30 1 -0.3633 -0.8923 -0.5098 31 1 1.6573 2.1292 0.0004 32 1 5.9685 1.4745 0.7317 33 1 5.8948 1.1469 -1.7250 34 1 5.9970 2.9079 -1.9630 35 1 7.3648 2.0261 -1.2416 36 1 5.8043 3.7708 1.6531 37 1 7.3120 3.5585 0.7315 38 1 5.9442 4.4402 0.0097 39 1 5.3631 -0.0017 -0.0096 40 1 4.5349 -2.8216 -1.0278 41 1 5.3106 -2.3702 0.5094 42 1 3.7722 -3.2655 0.5180 43 1 1.3959 -2.6252 2.1491 44 1 -2.6961 -6.3628 1.5585 45 1 -0.4731 -5.8414 -0.0242 46 1 0.1511 -4.7683 -2.1394 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001236079701.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:14 Heat of formation + Delta-G solvation = -66.146329 kcal Electronic energy + Delta-G solvation = -27761.879682 eV Core-core repulsion = 23915.831107 eV Total energy + Delta-G solvation = -3846.048575 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.158 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -47.44876 -40.20913 -38.37330 -36.92059 -33.86567 -33.41261 -33.02878 -31.16452 -29.71767 -28.68624 -27.58729 -26.48292 -26.32300 -25.06207 -22.77562 -21.61716 -20.92421 -20.28179 -19.77317 -17.56013 -17.39890 -16.20908 -16.05199 -15.48515 -15.39328 -15.05661 -14.67343 -14.34962 -14.06699 -13.91911 -13.57294 -13.36903 -12.98076 -12.80293 -12.76231 -12.70994 -12.63683 -12.45721 -12.23694 -12.13179 -11.95813 -11.92838 -11.52964 -11.38549 -11.29225 -11.28379 -11.09798 -11.03139 -10.85176 -10.54453 -10.34109 -10.21177 -9.94316 -9.54046 -9.19458 -8.28632 -7.65220 -7.63382 -7.32115 -6.87793 -4.45366 1.67482 1.77194 2.57204 2.70623 3.02171 3.03445 3.09639 3.25420 3.85306 4.03334 4.43249 4.61572 4.74312 4.89853 5.08780 5.12785 5.30616 5.31298 5.35854 5.45518 5.51603 5.52670 5.57932 5.73753 5.78943 5.81454 5.84016 5.94839 5.99233 6.02473 6.07407 6.11651 6.15216 6.23666 6.39548 6.56349 6.70172 6.75103 6.81568 6.84265 6.97428 7.10914 7.13070 7.13765 7.36803 7.63092 7.67002 7.78571 7.88974 8.10236 8.45884 8.74161 8.78359 10.07236 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.018728 B = 0.003050 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.748374 B = 9176.793368 C = 9533.409257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.027 4.027 3 C -0.163 4.163 4 C 0.126 3.874 5 O -0.314 6.314 6 C 0.076 3.924 7 C -0.180 4.180 8 C -0.147 4.147 9 C -0.220 4.220 10 C -0.029 4.029 11 C -0.115 4.115 12 C -0.058 4.058 13 C -0.044 4.044 14 C -0.187 4.187 15 C 0.105 3.895 16 C -0.457 4.457 17 H 0.080 0.920 18 C 0.076 3.924 19 N -0.792 5.792 20 Si 0.908 3.092 21 H -0.270 1.270 22 H -0.275 1.275 23 H -0.260 1.260 24 C -0.140 4.140 25 C -0.130 4.130 26 C -0.030 4.030 27 F -0.170 7.170 28 H 0.073 0.927 29 H 0.060 0.940 30 H 0.077 0.923 31 H 0.125 0.875 32 H 0.073 0.927 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.074 0.926 38 H 0.065 0.935 39 H 0.124 0.876 40 H 0.069 0.931 41 H 0.058 0.942 42 H 0.080 0.920 43 H 0.101 0.899 44 H 0.282 0.718 45 H 0.126 0.874 46 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.522 10.151 -1.495 14.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.027 4.027 3 C -0.182 4.182 4 C 0.081 3.919 5 O -0.229 6.229 6 C 0.020 3.980 7 C -0.238 4.238 8 C -0.204 4.204 9 C -0.238 4.238 10 C -0.029 4.029 11 C -0.171 4.171 12 C -0.058 4.058 13 C -0.044 4.044 14 C -0.207 4.207 15 C 0.102 3.898 16 C -0.486 4.486 17 H 0.098 0.902 18 C -0.142 4.142 19 N -0.417 5.417 20 Si 0.732 3.268 21 H -0.195 1.195 22 H -0.200 1.200 23 H -0.184 1.184 24 C -0.159 4.159 25 C -0.149 4.149 26 C -0.049 4.049 27 F -0.149 7.149 28 H 0.092 0.908 29 H 0.079 0.921 30 H 0.096 0.904 31 H 0.142 0.858 32 H 0.091 0.909 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.093 0.907 38 H 0.084 0.916 39 H 0.142 0.858 40 H 0.087 0.913 41 H 0.077 0.923 42 H 0.099 0.901 43 H 0.119 0.881 44 H 0.093 0.907 45 H 0.143 0.857 46 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 10.233 10.261 -1.615 14.581 hybrid contribution -0.010 -0.572 0.356 0.673 sum 10.223 9.690 -1.260 14.142 Atomic orbital electron populations 1.20787 0.90616 1.02869 1.02641 1.19755 0.96110 0.91171 0.95710 1.20089 0.90665 0.98139 1.09309 1.18865 0.91519 0.84252 0.97218 1.86068 1.19722 1.28568 1.88526 1.22367 0.79035 0.99422 0.97160 1.22384 1.01082 1.03264 0.97035 1.21839 1.00707 0.96244 1.01646 1.20932 0.99497 0.91619 1.11767 1.19724 0.92797 0.94601 0.95796 1.20807 0.99102 0.94866 1.02368 1.18581 0.91887 0.92605 1.02769 1.18087 1.00532 0.93245 0.92577 1.20867 1.08412 0.96938 0.94436 1.17551 0.89347 0.89558 0.93331 1.19547 1.10511 1.22615 0.95965 0.90185 1.25910 0.94628 0.96352 0.97343 1.69812 1.08148 1.31828 1.31887 0.86296 0.79616 0.79703 0.81170 1.19510 1.19981 1.18352 1.21242 1.03283 1.00840 0.90553 1.20635 1.00734 0.94988 0.98538 1.17273 1.11178 0.96958 0.79536 1.91290 1.91913 1.84713 1.46977 0.90825 0.92106 0.90440 0.85750 0.90935 0.91586 0.91594 0.91285 0.91714 0.90745 0.91610 0.85816 0.91254 0.92292 0.90134 0.88071 0.90670 0.85669 0.88113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.93 9.61 36.01 0.35 -1.58 16 2 C -0.03 -0.50 5.91 -104.31 -0.62 -1.12 16 3 C -0.16 -2.72 9.63 -39.48 -0.38 -3.10 16 4 C 0.13 2.01 6.60 -39.14 -0.26 1.75 16 5 O -0.31 -4.46 9.80 -19.34 -0.19 -4.65 16 6 C 0.08 0.82 2.85 -26.73 -0.08 0.74 16 7 C -0.18 -1.72 9.17 37.16 0.34 -1.38 16 8 C -0.15 -1.21 9.56 37.15 0.36 -0.86 16 9 C -0.22 -3.44 7.87 -39.48 -0.31 -3.76 16 10 C -0.03 -0.52 5.91 -104.32 -0.62 -1.13 16 11 C -0.11 -1.85 9.61 36.01 0.35 -1.51 16 12 C -0.06 -1.15 4.92 -104.89 -0.52 -1.67 16 13 C -0.04 -0.95 2.42 -104.91 -0.25 -1.21 16 14 C -0.19 -4.33 9.20 -38.55 -0.35 -4.68 16 15 C 0.10 2.61 5.56 -106.86 -0.59 2.02 16 16 C -0.46 -11.40 9.04 -37.78 -0.34 -11.74 16 17 H 0.08 1.92 7.90 -52.48 -0.41 1.51 16 18 C 0.08 1.80 5.14 -17.35 -0.09 1.71 16 19 N -0.79 -19.41 10.98 55.54 0.61 -18.80 16 20 Si 0.91 17.78 29.59 -169.99 -5.03 12.75 16 21 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 22 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 23 H -0.26 -5.06 7.11 56.52 0.40 -4.65 16 24 C -0.14 -3.43 8.68 -38.84 -0.34 -3.77 16 25 C -0.13 -2.99 9.99 -39.64 -0.40 -3.39 16 26 C -0.03 -0.68 7.00 -38.73 -0.27 -0.95 16 27 F -0.17 -3.85 16.81 2.25 0.04 -3.81 16 28 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.06 0.88 8.09 -51.93 -0.42 0.46 16 30 H 0.08 1.50 6.83 -51.93 -0.35 1.14 16 31 H 0.12 1.83 8.06 -52.49 -0.42 1.41 16 32 H 0.07 0.76 6.28 -51.93 -0.33 0.43 16 33 H 0.07 0.72 6.92 -51.93 -0.36 0.36 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.12 1.63 5.42 -52.49 -0.28 1.34 16 40 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.06 0.78 8.09 -51.93 -0.42 0.36 16 42 H 0.08 1.44 6.82 -51.93 -0.35 1.09 16 43 H 0.10 2.28 8.06 -52.48 -0.42 1.85 16 44 H 0.28 6.30 8.30 -40.82 -0.34 5.96 16 45 H 0.13 3.15 6.19 -52.49 -0.32 2.83 16 46 H 0.10 2.12 8.06 -52.49 -0.42 1.70 16 LS Contribution 379.16 15.07 5.71 5.71 Total: -1.00 -26.83 379.16 -9.50 -36.34 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: -6.62 Total: 8.07 kcal Atomic # 6 Polarization: -31.58 SS G_CDS: -4.02 Total: -35.60 kcal Atomic # 7 Polarization: -19.41 SS G_CDS: 0.61 Total: -18.80 kcal Atomic # 8 Polarization: -4.46 SS G_CDS: -0.19 Total: -4.65 kcal Atomic # 9 Polarization: -3.85 SS G_CDS: 0.04 Total: -3.81 kcal Atomic # 14 Polarization: 17.78 SS G_CDS: -5.03 Total: 12.75 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -26.83 -9.50 -36.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236079701.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.809 kcal (2) G-P(sol) polarization free energy of solvation -26.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds