Wall clock time and date at job start Tue Mar 31 2020 14:45:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.37906 * 120.02744 * 2 1 4 4 C 1.38831 * 120.06057 * 180.28010 * 3 2 1 5 5 O 1.35872 * 119.93688 * 179.72182 * 4 3 2 6 6 C 1.42903 * 117.00878 * 175.56231 * 5 4 3 7 7 C 1.53007 * 109.46940 * 84.46520 * 6 5 4 8 8 C 1.52994 * 109.47478 * 204.47215 * 6 5 4 9 9 C 1.38839 * 120.13233 * 359.69832 * 4 3 2 10 10 C 1.37901 * 120.06328 * 0.04310 * 9 4 3 11 11 C 1.50706 * 120.03098 * 179.97438 * 10 9 4 12 12 C 1.39379 * 119.93948 * 359.97438 * 10 9 4 13 13 C 1.48349 * 120.06867 * 179.97438 * 12 10 9 14 14 C 1.38672 * 120.02018 * 89.99774 * 13 12 10 15 15 C 1.40547 * 119.65757 * 179.72292 * 14 13 12 16 16 C 1.41342 * 120.15554 * 180.29592 * 15 14 13 17 17 H 1.08005 * 120.00189 * 334.54717 * 16 15 14 18 18 C 1.39891 * 120.00161 * 154.54644 * 16 15 14 19 19 N 1.30862 * 120.00188 * 342.77277 * 18 16 15 20 20 Si 1.86803 * 120.00243 * 162.77180 * 18 16 15 21 21 H 1.48502 * 109.46924 * 94.70726 * 20 18 16 22 22 H 1.48496 * 109.47287 * 214.70766 * 20 18 16 23 23 H 1.48496 * 109.46779 * 334.70891 * 20 18 16 24 24 C 1.40849 * 119.69221 * 0.27474 * 15 14 13 25 25 C 1.37568 * 120.02023 * 0.02562 * 24 15 14 26 26 C 1.38750 * 120.35015 * 359.97438 * 25 24 15 27 27 F 1.35100 * 119.84204 * 180.02562 * 26 25 24 28 28 H 1.09007 * 109.46864 * 270.25017 * 1 2 3 29 29 H 1.08992 * 109.47755 * 30.25484 * 1 2 3 30 30 H 1.09001 * 109.47051 * 150.25773 * 1 2 3 31 31 H 1.07992 * 119.97587 * 0.02562 * 3 2 1 32 32 H 1.09005 * 109.46602 * 324.47547 * 6 5 4 33 33 H 1.08996 * 109.46818 * 300.00657 * 7 6 5 34 34 H 1.09001 * 109.46317 * 60.00686 * 7 6 5 35 35 H 1.08996 * 109.46512 * 180.02562 * 7 6 5 36 36 H 1.08996 * 109.47341 * 59.99784 * 8 6 5 37 37 H 1.09006 * 109.46674 * 179.97438 * 8 6 5 38 38 H 1.08999 * 109.46925 * 299.99416 * 8 6 5 39 39 H 1.07999 * 119.96280 * 180.02562 * 9 4 3 40 40 H 1.08997 * 109.47271 * 269.98477 * 11 10 9 41 41 H 1.09006 * 109.46887 * 29.98647 * 11 10 9 42 42 H 1.08995 * 109.46784 * 149.97858 * 11 10 9 43 43 H 1.08006 * 120.17143 * 359.97438 * 14 13 12 44 44 H 0.97000 * 120.00642 * 180.02562 * 19 18 16 45 45 H 1.07995 * 119.98845 * 180.02562 * 24 15 14 46 46 H 1.07998 * 119.82276 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1972 1.1940 0.0000 4 6 3.5855 1.1948 -0.0059 5 8 4.2628 2.3726 -0.0116 6 6 5.6871 2.3026 0.0811 7 6 6.2785 2.0799 -1.3124 8 6 6.2256 3.6122 0.6604 9 6 4.2831 -0.0056 -0.0054 10 6 3.5984 -1.2026 -0.0001 11 6 4.3565 -2.5051 -0.0002 12 6 2.2047 -1.2067 0.0055 13 6 1.4652 -2.4927 0.0107 14 6 1.1241 -3.0920 1.2138 15 6 0.4184 -4.3075 1.2099 16 6 0.0600 -4.9243 2.4300 17 1 0.6367 -4.7314 3.3226 18 6 -1.0417 -5.7849 2.4816 19 7 -1.9319 -5.7664 1.5226 20 14 -1.2423 -6.9603 3.9195 21 1 -2.1184 -6.3413 4.9464 22 1 -1.8563 -8.2255 3.4427 23 1 0.0882 -7.2485 4.5125 24 6 0.0696 -4.9077 -0.0156 25 6 0.4199 -4.3050 -1.2016 26 6 1.1166 -3.1051 -1.1992 27 9 1.4550 -2.5219 -2.3699 28 1 -0.3633 0.0045 1.0277 29 1 -0.3634 0.8876 -0.5177 30 1 -0.3633 -0.8923 -0.5098 31 1 1.6573 2.1292 0.0004 32 1 5.9685 1.4745 0.7317 33 1 5.8948 1.1469 -1.7250 34 1 5.9970 2.9079 -1.9630 35 1 7.3648 2.0261 -1.2416 36 1 5.8043 3.7708 1.6531 37 1 7.3120 3.5585 0.7315 38 1 5.9442 4.4402 0.0097 39 1 5.3631 -0.0017 -0.0096 40 1 4.5349 -2.8216 -1.0278 41 1 5.3106 -2.3702 0.5094 42 1 3.7722 -3.2655 0.5180 43 1 1.3959 -2.6252 2.1491 44 1 -2.6961 -6.3628 1.5585 45 1 -0.4731 -5.8414 -0.0242 46 1 0.1511 -4.7683 -2.1394 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001236079701.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:13 Heat of formation + Delta-G solvation = -75.526039 kcal Electronic energy + Delta-G solvation = -27762.286417 eV Core-core repulsion = 23915.831107 eV Total energy + Delta-G solvation = -3846.455309 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.158 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.27998 -41.41932 -39.77570 -38.51578 -35.53701 -34.66053 -34.17164 -32.61094 -31.57361 -30.17150 -28.37527 -27.86900 -27.57731 -26.90923 -24.07618 -22.93454 -22.68545 -21.76859 -21.00823 -19.15189 -18.64902 -18.02360 -17.29497 -17.24041 -16.57195 -16.51191 -16.31518 -15.99222 -15.32839 -15.12503 -14.99627 -14.68614 -14.50501 -14.19490 -14.07479 -13.85078 -13.82068 -13.72945 -13.61193 -13.51514 -13.27341 -13.09782 -12.99492 -12.87327 -12.68514 -12.61691 -12.47111 -12.32300 -12.18158 -12.01819 -11.74088 -11.54755 -11.38269 -11.30163 -10.99321 -9.59691 -9.48429 -9.16778 -8.96683 -8.67702 -6.36206 0.35795 0.41631 0.77407 0.87555 1.40961 1.47283 1.55792 2.20810 2.23769 2.61890 2.69697 3.56486 3.75952 3.82270 3.85859 3.90989 3.97657 4.02382 4.14334 4.19660 4.31193 4.31506 4.50041 4.62550 4.70388 4.73028 4.74817 4.75902 4.80255 4.82254 4.86263 4.89527 4.94466 5.03201 5.06981 5.15438 5.19966 5.27224 5.28679 5.32672 5.35810 5.40203 5.60757 5.75921 5.78800 5.81885 5.90303 6.01686 6.26285 6.51909 6.58396 6.87217 6.91129 8.29470 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.018728 B = 0.003050 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.748374 B = 9176.793368 C = 9533.409257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.039 4.039 3 C -0.170 4.170 4 C 0.133 3.867 5 O -0.321 6.321 6 C 0.064 3.936 7 C -0.178 4.178 8 C -0.144 4.144 9 C -0.214 4.214 10 C -0.038 4.038 11 C -0.112 4.112 12 C -0.096 4.096 13 C -0.022 4.022 14 C -0.197 4.197 15 C 0.085 3.915 16 C -0.488 4.488 17 H 0.080 0.920 18 C 0.038 3.962 19 N -0.820 5.820 20 Si 0.981 3.019 21 H -0.264 1.264 22 H -0.266 1.266 23 H -0.258 1.258 24 C -0.160 4.160 25 C -0.130 4.130 26 C -0.043 4.043 27 F -0.169 7.169 28 H 0.075 0.925 29 H 0.087 0.913 30 H 0.048 0.952 31 H 0.143 0.857 32 H 0.077 0.923 33 H 0.050 0.950 34 H 0.064 0.936 35 H 0.095 0.905 36 H 0.061 0.939 37 H 0.100 0.900 38 H 0.066 0.934 39 H 0.152 0.848 40 H 0.071 0.929 41 H 0.089 0.911 42 H 0.055 0.945 43 H 0.101 0.899 44 H 0.291 0.709 45 H 0.114 0.886 46 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.322 11.458 -0.942 16.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.039 4.039 3 C -0.188 4.188 4 C 0.088 3.912 5 O -0.236 6.236 6 C 0.009 3.991 7 C -0.235 4.235 8 C -0.201 4.201 9 C -0.232 4.232 10 C -0.038 4.038 11 C -0.168 4.168 12 C -0.096 4.096 13 C -0.022 4.022 14 C -0.216 4.216 15 C 0.083 3.917 16 C -0.517 4.517 17 H 0.098 0.902 18 C -0.178 4.178 19 N -0.445 5.445 20 Si 0.801 3.199 21 H -0.189 1.189 22 H -0.191 1.191 23 H -0.181 1.181 24 C -0.180 4.180 25 C -0.149 4.149 26 C -0.062 4.062 27 F -0.148 7.148 28 H 0.093 0.907 29 H 0.106 0.894 30 H 0.067 0.933 31 H 0.161 0.839 32 H 0.095 0.905 33 H 0.069 0.931 34 H 0.083 0.917 35 H 0.113 0.887 36 H 0.080 0.920 37 H 0.118 0.882 38 H 0.085 0.915 39 H 0.169 0.831 40 H 0.089 0.911 41 H 0.108 0.892 42 H 0.074 0.926 43 H 0.119 0.881 44 H 0.102 0.898 45 H 0.132 0.868 46 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 12.044 11.586 -1.077 16.747 hybrid contribution -0.470 -0.815 0.124 0.949 sum 11.574 10.771 -0.953 15.839 Atomic orbital electron populations 1.20754 0.90411 1.02683 1.02713 1.19872 0.96509 0.91398 0.96107 1.20267 0.91385 0.98123 1.09029 1.18964 0.91572 0.85026 0.95637 1.86085 1.21864 1.27641 1.88015 1.22760 0.77098 1.01072 0.98182 1.22377 1.02661 1.02377 0.96074 1.21868 1.02181 0.94814 1.01192 1.21150 1.00832 0.90663 1.10569 1.19928 0.92185 0.96020 0.95712 1.20798 0.99992 0.93515 1.02541 1.18648 0.92978 0.91939 1.06077 1.18183 0.98804 0.93703 0.91555 1.20912 1.08850 0.96775 0.95087 1.17852 0.89850 0.90277 0.93767 1.19808 1.11559 1.24238 0.96062 0.90167 1.26735 0.93717 0.97253 1.00067 1.69858 1.08644 1.32474 1.33573 0.85205 0.79566 0.77449 0.77637 1.18853 1.19059 1.18131 1.21150 1.04699 1.01016 0.91106 1.20795 1.00195 0.95076 0.98792 1.17419 1.11655 0.97159 0.80008 1.91278 1.91946 1.84696 1.46903 0.90674 0.89434 0.93343 0.83948 0.90474 0.93083 0.91685 0.88666 0.92036 0.88169 0.91536 0.83058 0.91063 0.89175 0.92624 0.88074 0.89841 0.86775 0.86524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.77 9.61 71.24 0.68 -3.08 16 2 C -0.04 -1.41 5.91 -19.67 -0.12 -1.53 16 3 C -0.17 -5.41 9.63 22.33 0.22 -5.20 16 4 C 0.13 4.00 6.60 22.56 0.15 4.14 16 5 O -0.32 -8.34 9.80 -92.11 -0.90 -9.24 16 6 C 0.06 1.18 2.85 30.59 0.09 1.26 16 7 C -0.18 -2.84 9.17 71.98 0.66 -2.18 16 8 C -0.14 -1.90 9.56 71.98 0.69 -1.21 16 9 C -0.21 -6.28 7.87 22.33 0.18 -6.10 16 10 C -0.04 -1.33 5.91 -19.67 -0.12 -1.45 16 11 C -0.11 -3.54 9.61 71.24 0.68 -2.85 16 12 C -0.10 -3.83 4.92 -20.03 -0.10 -3.93 16 13 C -0.02 -0.97 2.42 -20.05 -0.05 -1.02 16 14 C -0.20 -9.49 9.20 22.94 0.21 -9.28 16 15 C 0.09 4.42 5.56 -21.31 -0.12 4.31 16 16 C -0.49 -25.12 9.04 23.43 0.21 -24.90 16 17 H 0.08 3.98 7.90 -2.91 -0.02 3.95 16 18 C 0.04 1.84 5.14 85.24 0.44 2.27 16 19 N -0.82 -41.09 10.98 21.82 0.24 -40.85 16 20 Si 0.98 36.51 29.59 68.60 2.03 38.54 16 21 H -0.26 -9.51 7.11 99.48 0.71 -8.81 16 22 H -0.27 -9.46 7.11 99.48 0.71 -8.75 16 23 H -0.26 -9.42 7.11 99.48 0.71 -8.71 16 24 C -0.16 -8.21 8.68 22.75 0.20 -8.01 16 25 C -0.13 -6.16 9.99 22.23 0.22 -5.94 16 26 C -0.04 -2.00 7.00 22.82 0.16 -1.84 16 27 F -0.17 -7.77 16.81 44.97 0.76 -7.01 16 28 H 0.07 2.51 8.14 -2.38 -0.02 2.49 16 29 H 0.09 2.47 8.09 -2.39 -0.02 2.45 16 30 H 0.05 1.93 6.83 -2.39 -0.02 1.91 16 31 H 0.14 3.92 8.06 -2.91 -0.02 3.90 16 32 H 0.08 1.35 6.28 -2.38 -0.01 1.34 16 33 H 0.05 0.98 6.92 -2.39 -0.02 0.96 16 34 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.10 0.82 8.14 -2.38 -0.02 0.81 16 38 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.15 3.51 5.42 -2.91 -0.02 3.49 16 40 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 41 H 0.09 2.21 8.09 -2.38 -0.02 2.20 16 42 H 0.05 2.02 6.82 -2.39 -0.02 2.01 16 43 H 0.10 4.76 8.06 -2.91 -0.02 4.74 16 44 H 0.29 13.13 8.30 -92.71 -0.77 12.36 16 45 H 0.11 6.02 6.19 -2.91 -0.02 6.00 16 46 H 0.12 5.02 8.06 -2.91 -0.02 4.99 16 Total: -1.00 -59.26 379.16 7.40 -51.86 By element: Atomic # 1 Polarization: 32.25 SS G_CDS: 0.99 Total: 33.24 kcal Atomic # 6 Polarization: -70.82 SS G_CDS: 4.29 Total: -66.53 kcal Atomic # 7 Polarization: -41.09 SS G_CDS: 0.24 Total: -40.85 kcal Atomic # 8 Polarization: -8.34 SS G_CDS: -0.90 Total: -9.24 kcal Atomic # 9 Polarization: -7.77 SS G_CDS: 0.76 Total: -7.01 kcal Atomic # 14 Polarization: 36.51 SS G_CDS: 2.03 Total: 38.54 kcal Total: -59.26 7.40 -51.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236079701.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.667 kcal (2) G-P(sol) polarization free energy of solvation -59.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds