Wall clock time and date at job start Tue Mar 31 2020 14:45:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37787 * 120.03876 * 2 1 4 4 C 1.38956 * 120.08127 * 180.30284 * 3 2 1 5 5 O 1.35816 * 119.90816 * 179.69939 * 4 3 2 6 6 C 1.42900 * 116.99492 * 185.27724 * 5 4 3 7 7 C 1.53002 * 109.46854 * 155.94612 * 6 5 4 8 8 C 1.52997 * 109.47462 * 275.94220 * 6 5 4 9 9 C 1.38951 * 120.17581 * 359.67804 * 4 3 2 10 10 C 1.37775 * 120.08882 * 359.97438 * 9 4 3 11 11 C 1.50698 * 120.04534 * 180.02562 * 10 9 4 12 12 C 1.39675 * 120.04962 * 179.68200 * 2 1 3 13 13 C 1.47908 * 120.08392 * 359.97438 * 12 2 1 14 14 C 1.40065 * 119.86893 * 114.70268 * 13 12 2 15 15 C 1.36170 * 120.17862 * 179.71244 * 14 13 12 16 16 C 1.40951 * 119.90397 * 0.58086 * 15 14 13 17 17 C 1.40928 * 120.13319 * 179.71587 * 16 15 14 18 18 H 1.07995 * 120.00464 * 207.99340 * 17 16 15 19 19 C 1.39970 * 119.99696 * 27.99024 * 17 16 15 20 20 N 1.30849 * 119.99809 * 198.18841 * 19 17 16 21 21 Si 1.86802 * 120.00192 * 18.18714 * 19 17 16 22 22 H 1.48502 * 109.46974 * 269.99829 * 21 19 17 23 23 H 1.48496 * 109.46842 * 30.00190 * 21 19 17 24 24 H 1.48496 * 109.46961 * 149.99911 * 21 19 17 25 25 C 1.41187 * 119.73730 * 359.44462 * 16 15 14 26 26 F 1.35098 * 120.08981 * 180.22736 * 25 16 15 27 27 C 1.36528 * 119.81648 * 0.25135 * 25 16 15 28 28 H 1.09001 * 109.47149 * 270.31312 * 1 2 3 29 29 H 1.08995 * 109.47798 * 30.32034 * 1 2 3 30 30 H 1.09007 * 109.46873 * 150.32310 * 1 2 3 31 31 H 1.08002 * 119.95713 * 0.02562 * 3 2 1 32 32 H 1.08992 * 109.47337 * 35.94841 * 6 5 4 33 33 H 1.09004 * 109.47189 * 59.99729 * 7 6 5 34 34 H 1.09001 * 109.47343 * 179.97438 * 7 6 5 35 35 H 1.08999 * 109.47179 * 299.99926 * 7 6 5 36 36 H 1.09004 * 109.47018 * 300.00538 * 8 6 5 37 37 H 1.09000 * 109.46688 * 60.00090 * 8 6 5 38 38 H 1.08994 * 109.47585 * 179.97438 * 8 6 5 39 39 H 1.07999 * 119.95479 * 180.02562 * 9 4 3 40 40 H 1.09004 * 109.46834 * 269.97969 * 11 10 9 41 41 H 1.08998 * 109.47329 * 29.97801 * 11 10 9 42 42 H 1.08996 * 109.47156 * 149.98751 * 11 10 9 43 43 H 1.08004 * 119.90951 * 0.02562 * 14 13 12 44 44 H 1.08004 * 120.04642 * 180.30064 * 15 14 13 45 45 H 0.96995 * 119.99966 * 354.91182 * 20 19 17 46 46 H 1.08005 * 119.95286 * 179.97438 * 27 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1968 1.1928 0.0000 4 6 3.5863 1.1938 -0.0064 5 8 4.2626 2.3716 -0.0125 6 6 5.6846 2.3025 -0.1359 7 6 6.2109 3.6177 -0.7141 8 6 6.3054 2.0668 1.2424 9 6 4.2857 -0.0068 -0.0060 10 6 3.6032 -1.2037 0.0012 11 6 4.3627 -2.5053 0.0022 12 6 2.2065 -1.2090 0.0067 13 6 1.4699 -2.4916 0.0144 14 6 1.5623 -3.3556 -1.0841 15 6 0.8915 -4.5407 -1.0812 16 6 0.0924 -4.8931 0.0250 17 6 -0.6087 -6.1157 0.0306 18 1 -1.5253 -6.2100 0.5937 19 6 -0.1169 -7.2076 -0.6940 20 7 -0.9084 -8.2069 -0.9891 21 14 1.6694 -7.2383 -1.2397 22 1 1.7880 -6.6122 -2.5811 23 1 2.4975 -6.4829 -0.2658 24 1 2.1425 -8.6443 -1.3062 25 6 0.0015 -4.0191 1.1302 26 9 -0.7587 -4.3519 2.1962 27 6 0.6837 -2.8365 1.1182 28 1 -0.3633 0.0056 1.0277 29 1 -0.3634 0.8870 -0.5188 30 1 -0.3633 -0.8929 -0.5088 31 1 1.6567 2.1281 0.0004 32 1 5.9521 1.4808 -0.8002 33 1 5.9433 4.4394 -0.0497 34 1 7.2956 3.5652 -0.8078 35 1 5.7687 3.7857 -1.6961 36 1 6.0378 2.8885 1.9067 37 1 5.9304 1.1298 1.6543 38 1 7.3899 2.0135 1.1482 39 1 5.3656 -0.0019 -0.0105 40 1 4.5408 -2.8228 -1.0253 41 1 5.3170 -2.3688 0.5109 42 1 3.7796 -3.2658 0.5215 43 1 2.1712 -3.0835 -1.9336 44 1 0.9682 -5.2075 -1.9274 45 1 -1.8145 -8.2262 -0.6436 46 1 0.6155 -2.1661 1.9623 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001236082641.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:18 Heat of formation + Delta-G solvation = -68.534721 kcal Electronic energy + Delta-G solvation = -27631.741716 eV Core-core repulsion = 23785.589573 eV Total energy + Delta-G solvation = -3846.152143 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.158 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -47.44617 -40.30124 -38.62795 -37.07853 -34.11157 -33.54139 -33.13904 -31.38651 -29.64124 -29.21726 -27.66211 -27.15374 -26.48932 -24.55418 -22.53941 -21.86858 -21.17558 -20.18249 -19.88464 -18.35701 -17.62687 -16.68214 -16.10937 -15.48513 -15.16873 -14.83396 -14.73397 -14.30101 -14.14964 -14.08744 -14.02953 -13.49941 -13.16202 -13.07347 -12.87921 -12.82389 -12.77254 -12.73904 -12.52359 -12.29904 -12.18121 -12.00269 -11.61906 -11.44718 -11.41599 -11.17844 -11.10883 -10.86844 -10.76041 -10.51405 -10.39043 -10.15371 -9.91802 -9.59836 -9.14387 -8.38679 -8.04889 -7.76970 -7.60472 -7.30971 -4.67862 1.58176 1.62409 2.40293 2.47418 3.08986 3.19376 3.25148 3.44105 3.88238 3.95395 4.33197 4.55369 4.67920 4.83822 5.01188 5.03694 5.15490 5.24867 5.25513 5.30505 5.43769 5.46063 5.51406 5.64188 5.71159 5.74341 5.77872 5.84440 5.88344 5.90780 5.93528 6.00505 6.01844 6.05841 6.17391 6.36876 6.46737 6.51102 6.60403 6.65566 6.81792 6.98994 7.05052 7.16961 7.30274 7.36456 7.52339 7.58464 7.63053 7.74837 8.19214 8.33312 8.53969 9.81195 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.020038 B = 0.003157 C = 0.002911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.007372 B = 8865.789927 C = 9615.479855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.040 4.040 3 C -0.161 4.161 4 C 0.120 3.880 5 O -0.315 6.315 6 C 0.077 3.923 7 C -0.147 4.147 8 C -0.181 4.181 9 C -0.216 4.216 10 C -0.040 4.040 11 C -0.114 4.114 12 C -0.038 4.038 13 C -0.169 4.169 14 C -0.054 4.054 15 C -0.235 4.235 16 C 0.076 3.924 17 C -0.494 4.494 18 H 0.082 0.918 19 C 0.041 3.959 20 N -0.801 5.801 21 Si 1.075 2.925 22 H -0.273 1.273 23 H -0.260 1.260 24 H -0.288 1.288 25 C -0.021 4.021 26 F -0.161 7.161 27 C -0.085 4.085 28 H 0.068 0.932 29 H 0.059 0.941 30 H 0.078 0.922 31 H 0.123 0.877 32 H 0.072 0.928 33 H 0.065 0.935 34 H 0.074 0.926 35 H 0.064 0.936 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.068 0.932 39 H 0.123 0.877 40 H 0.069 0.931 41 H 0.056 0.944 42 H 0.079 0.921 43 H 0.099 0.901 44 H 0.113 0.887 45 H 0.289 0.711 46 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.173 15.938 -0.132 20.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.040 4.040 3 C -0.179 4.179 4 C 0.075 3.925 5 O -0.229 6.229 6 C 0.021 3.979 7 C -0.205 4.205 8 C -0.238 4.238 9 C -0.235 4.235 10 C -0.040 4.040 11 C -0.170 4.170 12 C -0.038 4.038 13 C -0.171 4.171 14 C -0.072 4.072 15 C -0.254 4.254 16 C 0.072 3.928 17 C -0.522 4.522 18 H 0.100 0.900 19 C -0.180 4.180 20 N -0.422 5.422 21 Si 0.901 3.099 22 H -0.200 1.200 23 H -0.184 1.184 24 H -0.215 1.215 25 C -0.041 4.041 26 F -0.140 7.140 27 C -0.104 4.104 28 H 0.086 0.914 29 H 0.078 0.922 30 H 0.097 0.903 31 H 0.141 0.859 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.093 0.907 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.141 0.859 40 H 0.087 0.913 41 H 0.075 0.925 42 H 0.098 0.902 43 H 0.118 0.882 44 H 0.131 0.869 45 H 0.101 0.899 46 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 13.054 15.147 -0.928 20.017 hybrid contribution -1.308 0.694 1.115 1.854 sum 11.745 15.841 0.187 19.721 Atomic orbital electron populations 1.20785 0.90839 1.02871 1.02284 1.19842 0.95954 0.91349 0.96891 1.20103 0.90645 0.98172 1.09007 1.18911 0.91512 0.84254 0.97812 1.86054 1.19933 1.28606 1.88351 1.22353 0.79033 0.99366 0.97144 1.21841 1.00806 0.96180 1.01634 1.22393 1.01006 1.03223 0.97194 1.20962 0.99496 0.91686 1.11336 1.19835 0.93058 0.94427 0.96697 1.20810 0.99008 0.94905 1.02315 1.18525 0.91435 0.92289 1.01557 1.17551 1.07109 0.95581 0.96815 1.20386 0.97321 0.93388 0.96139 1.20628 1.06961 0.98806 0.99021 1.17779 0.91843 0.93366 0.89765 1.20643 1.08658 0.95918 1.26960 0.90024 1.27443 1.07026 0.91982 0.91536 1.70533 1.09121 1.32252 1.30311 0.83571 0.72512 0.75808 0.78054 1.20000 1.18395 1.21508 1.17358 1.02292 0.98326 0.86141 1.91303 1.74845 1.93181 1.54659 1.20307 0.97290 0.94953 0.97889 0.91352 0.92229 0.90298 0.85945 0.90988 0.91607 0.90725 0.91722 0.91592 0.91584 0.91270 0.85924 0.91278 0.92455 0.90227 0.88244 0.86903 0.89898 0.87812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.64 9.04 36.01 0.33 -1.31 16 2 C -0.04 -0.64 5.90 -104.25 -0.61 -1.26 16 3 C -0.16 -2.40 9.63 -39.48 -0.38 -2.78 16 4 C 0.12 1.73 6.60 -39.05 -0.26 1.48 16 5 O -0.31 -4.13 9.80 -19.16 -0.19 -4.32 16 6 C 0.08 0.75 2.85 -26.73 -0.08 0.68 16 7 C -0.15 -1.11 9.56 37.16 0.36 -0.75 16 8 C -0.18 -1.57 9.15 37.16 0.34 -1.23 16 9 C -0.22 -3.05 7.83 -39.49 -0.31 -3.36 16 10 C -0.04 -0.63 5.90 -104.25 -0.61 -1.25 16 11 C -0.11 -1.64 9.03 36.00 0.33 -1.32 16 12 C -0.04 -0.66 5.30 -104.86 -0.56 -1.21 16 13 C -0.17 -3.30 2.96 -104.65 -0.31 -3.61 16 14 C -0.05 -1.09 8.72 -39.64 -0.35 -1.43 16 15 C -0.24 -5.32 7.21 -39.30 -0.28 -5.60 16 16 C 0.08 1.90 5.16 -106.73 -0.55 1.35 16 17 C -0.49 -13.10 9.12 -37.92 -0.35 -13.45 16 18 H 0.08 2.29 7.94 -52.49 -0.42 1.87 16 19 C 0.04 1.05 5.41 -17.32 -0.09 0.96 16 20 N -0.80 -20.84 13.66 55.55 0.76 -20.09 16 21 Si 1.08 23.20 24.89 -169.99 -4.23 18.97 16 22 H -0.27 -5.51 6.41 56.52 0.36 -5.14 16 23 H -0.26 -5.51 7.03 56.52 0.40 -5.12 16 24 H -0.29 -6.05 7.11 56.52 0.40 -5.65 16 25 C -0.02 -0.51 7.26 -39.08 -0.28 -0.79 16 26 F -0.16 -3.94 16.73 2.25 0.04 -3.91 16 27 C -0.09 -1.78 8.71 -39.60 -0.35 -2.13 16 28 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.06 0.74 8.09 -51.93 -0.42 0.32 16 30 H 0.08 1.30 6.93 -51.93 -0.36 0.94 16 31 H 0.12 1.63 8.06 -52.49 -0.42 1.21 16 32 H 0.07 0.69 6.35 -51.93 -0.33 0.36 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.65 6.81 -51.93 -0.35 0.30 16 38 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.12 1.46 5.37 -52.49 -0.28 1.18 16 40 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.06 0.69 8.08 -51.93 -0.42 0.27 16 42 H 0.08 1.31 6.92 -51.93 -0.36 0.95 16 43 H 0.10 1.79 8.06 -52.48 -0.42 1.37 16 44 H 0.11 2.51 4.30 -52.48 -0.23 2.29 16 45 H 0.29 7.35 8.73 -40.82 -0.36 6.99 16 46 H 0.10 2.02 8.06 -52.48 -0.42 1.59 16 LS Contribution 371.65 15.07 5.60 5.60 Total: -1.00 -27.04 371.65 -8.63 -35.67 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -6.59 Total: 5.09 kcal Atomic # 6 Polarization: -33.00 SS G_CDS: -4.02 Total: -37.02 kcal Atomic # 7 Polarization: -20.84 SS G_CDS: 0.76 Total: -20.09 kcal Atomic # 8 Polarization: -4.13 SS G_CDS: -0.19 Total: -4.32 kcal Atomic # 9 Polarization: -3.94 SS G_CDS: 0.04 Total: -3.91 kcal Atomic # 14 Polarization: 23.20 SS G_CDS: -4.23 Total: 18.97 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -27.04 -8.63 -35.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236082641.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.863 kcal (2) G-P(sol) polarization free energy of solvation -27.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds