Wall clock time and date at job start Tue Mar 31 2020 14:45:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37787 * 120.03876 * 2 1 4 4 C 1.38956 * 120.08127 * 180.30284 * 3 2 1 5 5 O 1.35816 * 119.90816 * 179.69939 * 4 3 2 6 6 C 1.42900 * 116.99492 * 185.27724 * 5 4 3 7 7 C 1.53002 * 109.46854 * 155.94612 * 6 5 4 8 8 C 1.52997 * 109.47462 * 275.94220 * 6 5 4 9 9 C 1.38951 * 120.17581 * 359.67804 * 4 3 2 10 10 C 1.37775 * 120.08882 * 359.97438 * 9 4 3 11 11 C 1.50698 * 120.04534 * 180.02562 * 10 9 4 12 12 C 1.39675 * 120.04962 * 179.68200 * 2 1 3 13 13 C 1.47908 * 120.08392 * 359.97438 * 12 2 1 14 14 C 1.40065 * 119.86893 * 114.70268 * 13 12 2 15 15 C 1.36170 * 120.17862 * 179.71244 * 14 13 12 16 16 C 1.40951 * 119.90397 * 0.58086 * 15 14 13 17 17 C 1.40928 * 120.13319 * 179.71587 * 16 15 14 18 18 H 1.07995 * 120.00464 * 207.99340 * 17 16 15 19 19 C 1.39970 * 119.99696 * 27.99024 * 17 16 15 20 20 N 1.30849 * 119.99809 * 198.18841 * 19 17 16 21 21 Si 1.86802 * 120.00192 * 18.18714 * 19 17 16 22 22 H 1.48502 * 109.46974 * 269.99829 * 21 19 17 23 23 H 1.48496 * 109.46842 * 30.00190 * 21 19 17 24 24 H 1.48496 * 109.46961 * 149.99911 * 21 19 17 25 25 C 1.41187 * 119.73730 * 359.44462 * 16 15 14 26 26 F 1.35098 * 120.08981 * 180.22736 * 25 16 15 27 27 C 1.36528 * 119.81648 * 0.25135 * 25 16 15 28 28 H 1.09001 * 109.47149 * 270.31312 * 1 2 3 29 29 H 1.08995 * 109.47798 * 30.32034 * 1 2 3 30 30 H 1.09007 * 109.46873 * 150.32310 * 1 2 3 31 31 H 1.08002 * 119.95713 * 0.02562 * 3 2 1 32 32 H 1.08992 * 109.47337 * 35.94841 * 6 5 4 33 33 H 1.09004 * 109.47189 * 59.99729 * 7 6 5 34 34 H 1.09001 * 109.47343 * 179.97438 * 7 6 5 35 35 H 1.08999 * 109.47179 * 299.99926 * 7 6 5 36 36 H 1.09004 * 109.47018 * 300.00538 * 8 6 5 37 37 H 1.09000 * 109.46688 * 60.00090 * 8 6 5 38 38 H 1.08994 * 109.47585 * 179.97438 * 8 6 5 39 39 H 1.07999 * 119.95479 * 180.02562 * 9 4 3 40 40 H 1.09004 * 109.46834 * 269.97969 * 11 10 9 41 41 H 1.08998 * 109.47329 * 29.97801 * 11 10 9 42 42 H 1.08996 * 109.47156 * 149.98751 * 11 10 9 43 43 H 1.08004 * 119.90951 * 0.02562 * 14 13 12 44 44 H 1.08004 * 120.04642 * 180.30064 * 15 14 13 45 45 H 0.96995 * 119.99966 * 354.91182 * 20 19 17 46 46 H 1.08005 * 119.95286 * 179.97438 * 27 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1968 1.1928 0.0000 4 6 3.5863 1.1938 -0.0064 5 8 4.2626 2.3716 -0.0125 6 6 5.6846 2.3025 -0.1359 7 6 6.2109 3.6177 -0.7141 8 6 6.3054 2.0668 1.2424 9 6 4.2857 -0.0068 -0.0060 10 6 3.6032 -1.2037 0.0012 11 6 4.3627 -2.5053 0.0022 12 6 2.2065 -1.2090 0.0067 13 6 1.4699 -2.4916 0.0144 14 6 1.5623 -3.3556 -1.0841 15 6 0.8915 -4.5407 -1.0812 16 6 0.0924 -4.8931 0.0250 17 6 -0.6087 -6.1157 0.0306 18 1 -1.5253 -6.2100 0.5937 19 6 -0.1169 -7.2076 -0.6940 20 7 -0.9084 -8.2069 -0.9891 21 14 1.6694 -7.2383 -1.2397 22 1 1.7880 -6.6122 -2.5811 23 1 2.4975 -6.4829 -0.2658 24 1 2.1425 -8.6443 -1.3062 25 6 0.0015 -4.0191 1.1302 26 9 -0.7587 -4.3519 2.1962 27 6 0.6837 -2.8365 1.1182 28 1 -0.3633 0.0056 1.0277 29 1 -0.3634 0.8870 -0.5188 30 1 -0.3633 -0.8929 -0.5088 31 1 1.6567 2.1281 0.0004 32 1 5.9521 1.4808 -0.8002 33 1 5.9433 4.4394 -0.0497 34 1 7.2956 3.5652 -0.8078 35 1 5.7687 3.7857 -1.6961 36 1 6.0378 2.8885 1.9067 37 1 5.9304 1.1298 1.6543 38 1 7.3899 2.0135 1.1482 39 1 5.3656 -0.0019 -0.0105 40 1 4.5408 -2.8228 -1.0253 41 1 5.3170 -2.3688 0.5109 42 1 3.7796 -3.2658 0.5215 43 1 2.1712 -3.0835 -1.9336 44 1 0.9682 -5.2075 -1.9274 45 1 -1.8145 -8.2262 -0.6436 46 1 0.6155 -2.1661 1.9623 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001236082641.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:17 Heat of formation + Delta-G solvation = -79.912411 kcal Electronic energy + Delta-G solvation = -27632.235089 eV Core-core repulsion = 23785.589573 eV Total energy + Delta-G solvation = -3846.645517 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.158 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -49.37359 -41.41207 -39.99592 -38.53450 -35.84092 -34.63035 -34.16349 -32.86836 -31.34370 -30.66748 -28.56248 -28.29022 -27.54466 -26.15253 -23.86909 -23.31816 -22.55945 -21.66516 -20.98157 -20.22275 -18.60151 -18.27675 -17.31367 -16.91804 -16.58047 -16.31460 -16.26984 -16.01842 -15.81795 -15.15843 -15.14477 -14.95906 -14.62443 -14.55071 -14.09574 -13.98952 -13.82450 -13.75262 -13.56570 -13.45789 -13.28784 -13.06480 -12.95830 -12.90561 -12.59326 -12.52059 -12.42584 -12.17448 -12.06470 -11.87287 -11.68487 -11.52625 -11.45836 -11.29408 -10.89957 -9.77348 -9.55456 -9.53477 -9.33076 -8.79650 -6.64041 0.28313 0.43345 0.66729 0.75768 1.35236 1.53733 1.76138 2.14212 2.28843 2.49210 2.78675 3.27144 3.76338 3.82775 3.90485 3.92918 4.04328 4.05533 4.15976 4.19006 4.23870 4.36827 4.45588 4.56655 4.69896 4.70724 4.72824 4.79540 4.80624 4.83551 4.86280 4.89504 4.92761 4.92931 4.99678 5.12588 5.22895 5.28832 5.29976 5.35679 5.42008 5.44146 5.44754 5.60629 5.70665 5.77548 5.90395 5.92748 5.94955 6.22453 6.48872 6.57448 6.67105 7.87437 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.020038 B = 0.003157 C = 0.002911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.007372 B = 8865.789927 C = 9615.479855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.041 4.041 3 C -0.170 4.170 4 C 0.128 3.872 5 O -0.324 6.324 6 C 0.067 3.933 7 C -0.145 4.145 8 C -0.178 4.178 9 C -0.213 4.213 10 C -0.039 4.039 11 C -0.115 4.115 12 C -0.076 4.076 13 C -0.126 4.126 14 C -0.055 4.055 15 C -0.231 4.231 16 C 0.056 3.944 17 C -0.538 4.538 18 H 0.042 0.958 19 C 0.011 3.989 20 N -0.831 5.831 21 Si 1.103 2.897 22 H -0.245 1.245 23 H -0.256 1.256 24 H -0.279 1.279 25 C -0.045 4.045 26 F -0.173 7.173 27 C -0.085 4.085 28 H 0.072 0.928 29 H 0.082 0.918 30 H 0.056 0.944 31 H 0.137 0.863 32 H 0.078 0.922 33 H 0.064 0.936 34 H 0.098 0.902 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.053 0.947 38 H 0.093 0.907 39 H 0.148 0.852 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.055 0.945 43 H 0.132 0.868 44 H 0.119 0.881 45 H 0.279 0.721 46 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.134 19.393 -1.149 25.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.041 4.041 3 C -0.188 4.188 4 C 0.083 3.917 5 O -0.239 6.239 6 C 0.011 3.989 7 C -0.202 4.202 8 C -0.236 4.236 9 C -0.232 4.232 10 C -0.039 4.039 11 C -0.172 4.172 12 C -0.076 4.076 13 C -0.127 4.127 14 C -0.073 4.073 15 C -0.249 4.249 16 C 0.053 3.947 17 C -0.567 4.567 18 H 0.060 0.940 19 C -0.203 4.203 20 N -0.453 5.453 21 Si 0.922 3.078 22 H -0.170 1.170 23 H -0.180 1.180 24 H -0.206 1.206 25 C -0.065 4.065 26 F -0.152 7.152 27 C -0.104 4.104 28 H 0.090 0.910 29 H 0.101 0.899 30 H 0.075 0.925 31 H 0.155 0.845 32 H 0.096 0.904 33 H 0.083 0.917 34 H 0.117 0.883 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.072 0.928 38 H 0.111 0.889 39 H 0.166 0.834 40 H 0.100 0.900 41 H 0.101 0.899 42 H 0.074 0.926 43 H 0.150 0.850 44 H 0.136 0.864 45 H 0.089 0.911 46 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 17.006 18.627 -1.944 25.297 hybrid contribution -2.366 0.076 1.516 2.811 sum 14.640 18.703 -0.428 23.755 Atomic orbital electron populations 1.20789 0.90438 1.02940 1.02584 1.19910 0.96353 0.91341 0.96499 1.20267 0.91238 0.98284 1.09034 1.19064 0.91637 0.84973 0.96073 1.86070 1.21966 1.28006 1.87867 1.22713 0.77218 1.00884 0.98073 1.21872 1.02217 0.94890 1.01199 1.22386 1.02461 1.02410 0.96315 1.21155 1.00748 0.90813 1.10466 1.19976 0.92359 0.95655 0.95935 1.20852 0.99685 0.93475 1.03164 1.18477 0.92343 0.91341 1.05432 1.17883 1.03929 0.95813 0.95108 1.20735 0.96989 0.92348 0.97266 1.20792 1.06157 0.99738 0.98255 1.17952 0.92733 0.93107 0.90915 1.20491 1.08804 0.97953 1.29465 0.94001 1.28554 1.09632 0.91073 0.91080 1.70607 1.08966 1.33275 1.32486 0.83293 0.68715 0.76639 0.79168 1.16963 1.18050 1.20614 1.17744 1.03183 0.99545 0.86027 1.91263 1.75351 1.93441 1.55134 1.20519 0.96829 0.94052 0.99033 0.90982 0.89891 0.92488 0.84512 0.90378 0.91694 0.88314 0.92015 0.91859 0.92789 0.88863 0.83446 0.89974 0.89911 0.92636 0.85043 0.86353 0.91084 0.86250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.05 9.04 71.24 0.64 -2.41 16 2 C -0.04 -1.20 5.90 -19.62 -0.12 -1.32 16 3 C -0.17 -4.52 9.63 22.34 0.21 -4.30 16 4 C 0.13 3.24 6.60 22.61 0.15 3.39 16 5 O -0.32 -7.35 9.80 -91.49 -0.90 -8.25 16 6 C 0.07 1.03 2.85 30.59 0.09 1.12 16 7 C -0.14 -1.62 9.56 71.98 0.69 -0.93 16 8 C -0.18 -2.40 9.15 71.98 0.66 -1.74 16 9 C -0.21 -5.15 7.83 22.33 0.17 -4.97 16 10 C -0.04 -1.09 5.90 -19.63 -0.12 -1.21 16 11 C -0.12 -2.89 9.03 71.24 0.64 -2.25 16 12 C -0.08 -2.42 5.30 -20.02 -0.11 -2.52 16 13 C -0.13 -4.69 2.96 -19.88 -0.06 -4.75 16 14 C -0.06 -2.11 8.72 22.23 0.19 -1.91 16 15 C -0.23 -10.27 7.21 22.45 0.16 -10.11 16 16 C 0.06 2.89 5.16 -21.23 -0.11 2.78 16 17 C -0.54 -30.49 9.12 23.35 0.21 -30.28 16 18 H 0.04 2.59 7.94 -2.91 -0.02 2.57 16 19 C 0.01 0.59 5.41 85.26 0.46 1.05 16 20 N -0.83 -45.76 13.66 21.83 0.30 -45.46 16 21 Si 1.10 46.65 24.89 68.60 1.71 48.36 16 22 H -0.24 -9.16 6.41 99.48 0.64 -8.52 16 23 H -0.26 -10.57 7.03 99.48 0.70 -9.87 16 24 H -0.28 -11.35 7.11 99.48 0.71 -10.65 16 25 C -0.05 -2.22 7.26 22.59 0.16 -2.05 16 26 F -0.17 -8.91 16.73 44.97 0.75 -8.15 16 27 C -0.09 -3.53 8.71 22.26 0.19 -3.34 16 28 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 29 H 0.08 1.86 8.09 -2.39 -0.02 1.84 16 30 H 0.06 1.80 6.93 -2.38 -0.02 1.79 16 31 H 0.14 3.19 8.06 -2.91 -0.02 3.17 16 32 H 0.08 1.13 6.35 -2.39 -0.02 1.12 16 33 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 34 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 37 H 0.05 0.86 6.81 -2.39 -0.02 0.85 16 38 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 39 H 0.15 2.78 5.37 -2.91 -0.02 2.77 16 40 H 0.08 1.86 8.14 -2.38 -0.02 1.84 16 41 H 0.08 1.64 8.08 -2.39 -0.02 1.63 16 42 H 0.05 1.67 6.92 -2.39 -0.02 1.65 16 43 H 0.13 4.22 8.06 -2.91 -0.02 4.20 16 44 H 0.12 5.12 4.30 -2.91 -0.01 5.11 16 45 H 0.28 15.35 8.73 -92.71 -0.81 14.54 16 46 H 0.12 4.53 8.06 -2.91 -0.02 4.51 16 Total: -1.00 -61.97 371.65 6.88 -55.09 By element: Atomic # 1 Polarization: 23.29 SS G_CDS: 0.87 Total: 24.16 kcal Atomic # 6 Polarization: -69.90 SS G_CDS: 4.14 Total: -65.75 kcal Atomic # 7 Polarization: -45.76 SS G_CDS: 0.30 Total: -45.46 kcal Atomic # 8 Polarization: -7.35 SS G_CDS: -0.90 Total: -8.25 kcal Atomic # 9 Polarization: -8.91 SS G_CDS: 0.75 Total: -8.15 kcal Atomic # 14 Polarization: 46.65 SS G_CDS: 1.71 Total: 48.36 kcal Total: -61.97 6.88 -55.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236082641.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.817 kcal (2) G-P(sol) polarization free energy of solvation -61.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds