Wall clock time and date at job start Tue Mar 31 2020 14:45:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37915 * 120.03529 * 2 1 4 4 C 1.38821 * 120.06822 * 180.02562 * 3 2 1 5 5 O 1.35882 * 119.93705 * 179.97438 * 4 3 2 6 6 C 1.42896 * 116.99924 * 174.72973 * 5 4 3 7 7 C 1.52991 * 109.47179 * 83.60913 * 6 5 4 8 8 C 1.53005 * 109.46990 * 203.60955 * 6 5 4 9 9 C 1.38827 * 120.12716 * 359.95038 * 4 3 2 10 10 C 1.37914 * 120.07080 * 0.05091 * 9 4 3 11 11 C 1.50697 * 120.03452 * 179.97438 * 10 9 4 12 12 C 1.39370 * 120.03126 * 180.02562 * 2 1 3 13 13 C 1.48372 * 120.06807 * 0.25832 * 12 2 1 14 14 C 1.39601 * 120.01537 * 269.72403 * 13 12 2 15 15 C 1.38461 * 120.42113 * 179.97438 * 14 13 12 16 16 C 1.37660 * 120.44920 * 0.04084 * 15 14 13 17 17 C 1.40749 * 120.02426 * 359.95734 * 16 15 14 18 18 C 1.41319 * 120.20955 * 179.97438 * 17 16 15 19 19 H 1.08000 * 120.00548 * 206.68870 * 18 17 16 20 20 C 1.39932 * 119.99684 * 26.68795 * 18 17 16 21 21 N 1.30846 * 120.00339 * 12.89235 * 20 18 17 22 22 Si 1.86808 * 119.99963 * 192.88839 * 20 18 17 23 23 H 1.48503 * 109.46604 * 90.00244 * 22 20 18 24 24 H 1.48498 * 109.47122 * 210.00398 * 22 20 18 25 25 H 1.48495 * 109.46908 * 330.00406 * 22 20 18 26 26 C 1.39068 * 120.01654 * 89.44119 * 13 12 2 27 27 F 1.35100 * 120.22428 * 0.02562 * 26 13 12 28 28 H 1.09007 * 109.47467 * 269.98351 * 1 2 3 29 29 H 1.09007 * 109.47475 * 29.97607 * 1 2 3 30 30 H 1.09003 * 109.47600 * 149.98173 * 1 2 3 31 31 H 1.07999 * 119.96270 * 359.97438 * 3 2 1 32 32 H 1.08997 * 109.47094 * 323.60486 * 6 5 4 33 33 H 1.08999 * 109.47588 * 299.99842 * 7 6 5 34 34 H 1.09006 * 109.47386 * 59.99978 * 7 6 5 35 35 H 1.09008 * 109.47266 * 179.97438 * 7 6 5 36 36 H 1.09006 * 109.46715 * 60.00050 * 8 6 5 37 37 H 1.08999 * 109.47042 * 180.02562 * 8 6 5 38 38 H 1.08994 * 109.47203 * 300.00057 * 8 6 5 39 39 H 1.08004 * 119.96596 * 180.02562 * 9 4 3 40 40 H 1.08992 * 109.47092 * 269.97287 * 11 10 9 41 41 H 1.08993 * 109.47259 * 29.98096 * 11 10 9 42 42 H 1.09003 * 109.46695 * 149.97437 * 11 10 9 43 43 H 1.08003 * 119.78790 * 359.97438 * 14 13 12 44 44 H 1.07994 * 119.77414 * 180.02562 * 15 14 13 45 45 H 1.08005 * 119.98732 * 179.97438 * 16 15 14 46 46 H 0.96999 * 120.00241 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1940 0.0000 4 6 3.5855 1.1948 -0.0005 5 8 4.2629 2.3727 -0.0011 6 6 5.6854 2.3030 0.1154 7 6 6.2983 2.0519 -1.2638 8 6 6.2165 3.6235 0.6768 9 6 4.2830 -0.0056 0.0000 10 6 3.5982 -1.2027 -0.0001 11 6 4.3562 -2.5052 -0.0001 12 6 2.2045 -1.2066 -0.0005 13 6 1.4649 -2.4928 -0.0069 14 6 1.1171 -3.1044 1.1989 15 6 0.4264 -4.3044 1.2027 16 6 0.0744 -4.9106 0.0180 17 6 0.4155 -4.3105 -1.2087 18 6 0.0566 -4.9296 -2.4273 19 1 0.6416 -4.7500 -3.3172 20 6 -1.0569 -5.7755 -2.4809 21 7 -1.9082 -5.8002 -1.4875 22 14 -1.3280 -6.8694 -3.9707 23 1 -0.6567 -8.1761 -3.7539 24 1 -2.7838 -7.0871 -4.1666 25 1 -0.7588 -6.2144 -5.1758 26 6 1.1126 -3.0868 -1.2140 27 9 1.4420 -2.4969 -2.3839 28 1 -0.3634 -0.0003 1.0277 29 1 -0.3634 0.8902 -0.5135 30 1 -0.3634 -0.8898 -0.5141 31 1 1.6573 2.1292 -0.0004 32 1 5.9555 1.4880 0.7868 33 1 5.9200 1.1112 -1.6638 34 1 6.0282 2.8670 -1.9353 35 1 7.3835 1.9992 -1.1751 36 1 5.7798 3.8023 1.6594 37 1 7.3016 3.5705 0.7652 38 1 5.9464 4.4385 0.0054 39 1 5.3630 -0.0019 0.0000 40 1 4.5385 -2.8194 -1.0277 41 1 5.3082 -2.3716 0.5134 42 1 3.7698 -3.2667 0.5141 43 1 1.3885 -2.6384 2.1347 44 1 0.1623 -4.7681 2.1416 45 1 -0.4639 -5.8468 0.0297 46 1 -2.6802 -6.3863 -1.5249 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001236083180.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:21 Heat of formation + Delta-G solvation = -64.939016 kcal Electronic energy + Delta-G solvation = -27909.052902 eV Core-core repulsion = 24063.056680 eV Total energy + Delta-G solvation = -3845.996222 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.158 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -47.20524 -40.20938 -38.35342 -36.86131 -33.96359 -33.43415 -33.02751 -31.09963 -29.63820 -28.57210 -27.59656 -26.45015 -26.27911 -25.33131 -22.76509 -21.58266 -20.78958 -20.25713 -19.76464 -17.55234 -17.37333 -16.07078 -16.02570 -15.44586 -15.30605 -15.25731 -14.50987 -14.29329 -14.03306 -13.80081 -13.59647 -13.38910 -12.94503 -12.86071 -12.76598 -12.75965 -12.69893 -12.45335 -12.28745 -12.15566 -11.86713 -11.66060 -11.50040 -11.42147 -11.30596 -11.19979 -11.07825 -10.97188 -10.74883 -10.54056 -10.31080 -10.27921 -9.82723 -9.57033 -9.29518 -8.28553 -7.64051 -7.50447 -7.31249 -6.81339 -4.46382 1.67390 1.77304 2.63233 2.66809 3.04064 3.08471 3.12275 3.25501 3.88527 4.03368 4.50129 4.61740 4.74202 4.90078 5.08994 5.12476 5.30744 5.31393 5.35464 5.43387 5.51805 5.53112 5.58067 5.73581 5.81522 5.83601 5.88802 5.94422 6.00144 6.03635 6.07653 6.11429 6.21786 6.26299 6.40659 6.55106 6.58428 6.70754 6.81481 6.84681 7.05547 7.09827 7.13448 7.16806 7.46836 7.58570 7.67555 7.89091 7.95862 8.05506 8.49512 8.71232 8.79370 10.11005 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.021373 B = 0.003075 C = 0.002990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.778791 B = 9104.778668 C = 9363.790583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.028 4.028 3 C -0.163 4.163 4 C 0.126 3.874 5 O -0.314 6.314 6 C 0.077 3.923 7 C -0.182 4.182 8 C -0.147 4.147 9 C -0.219 4.219 10 C -0.030 4.030 11 C -0.114 4.114 12 C -0.057 4.057 13 C -0.052 4.052 14 C -0.200 4.200 15 C -0.113 4.113 16 C -0.141 4.141 17 C 0.085 3.915 18 C -0.454 4.454 19 H 0.081 0.919 20 C 0.075 3.925 21 N -0.796 5.796 22 Si 0.913 3.087 23 H -0.267 1.267 24 H -0.277 1.277 25 H -0.261 1.261 26 C -0.008 4.008 27 F -0.159 7.159 28 H 0.070 0.930 29 H 0.061 0.939 30 H 0.079 0.921 31 H 0.124 0.876 32 H 0.072 0.928 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.074 0.926 38 H 0.065 0.935 39 H 0.124 0.876 40 H 0.070 0.930 41 H 0.057 0.943 42 H 0.078 0.922 43 H 0.095 0.905 44 H 0.095 0.905 45 H 0.128 0.872 46 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.477 10.203 4.115 15.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.028 4.028 3 C -0.182 4.182 4 C 0.081 3.919 5 O -0.229 6.229 6 C 0.021 3.979 7 C -0.239 4.239 8 C -0.204 4.204 9 C -0.238 4.238 10 C -0.030 4.030 11 C -0.171 4.171 12 C -0.057 4.057 13 C -0.053 4.053 14 C -0.219 4.219 15 C -0.132 4.132 16 C -0.161 4.161 17 C 0.082 3.918 18 C -0.483 4.483 19 H 0.099 0.901 20 C -0.143 4.143 21 N -0.421 5.421 22 Si 0.737 3.263 23 H -0.192 1.192 24 H -0.202 1.202 25 H -0.185 1.185 26 C -0.028 4.028 27 F -0.138 7.138 28 H 0.089 0.911 29 H 0.080 0.920 30 H 0.098 0.902 31 H 0.142 0.858 32 H 0.090 0.910 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.093 0.907 38 H 0.084 0.916 39 H 0.142 0.858 40 H 0.089 0.911 41 H 0.076 0.924 42 H 0.097 0.903 43 H 0.113 0.887 44 H 0.113 0.887 45 H 0.146 0.854 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 10.187 10.315 4.111 15.069 hybrid contribution 0.010 -0.500 -0.846 0.983 sum 10.198 9.815 3.265 14.525 Atomic orbital electron populations 1.20794 0.90633 1.03194 1.02356 1.19757 0.96110 0.91179 0.95751 1.20094 0.90672 0.98142 1.09272 1.18856 0.91509 0.84247 0.97276 1.86069 1.19856 1.28584 1.88389 1.22352 0.79051 0.99297 0.97207 1.22403 1.00999 1.03313 0.97183 1.21836 1.00741 0.96129 1.01700 1.20941 0.99500 0.91620 1.11727 1.19731 0.92818 0.94592 0.95848 1.20799 0.98962 0.94791 1.02546 1.18584 0.91875 0.92607 1.02671 1.18067 1.01103 0.93520 0.92633 1.20205 1.08359 0.98753 0.94616 1.20660 0.99478 0.95790 0.97227 1.21296 1.03426 1.00989 0.90385 1.17565 0.90740 0.88896 0.94629 1.19502 1.09839 1.22910 0.96092 0.90101 1.25880 0.94738 0.95905 0.97737 1.69783 1.09482 1.31622 1.31231 0.86218 0.78093 0.80356 0.81590 1.19193 1.20173 1.18511 1.17882 1.10797 0.94800 0.79313 1.91281 1.91604 1.83748 1.47147 0.91104 0.92045 0.90187 0.85762 0.91019 0.91497 0.91567 0.91288 0.91740 0.90742 0.91595 0.85814 0.91100 0.92355 0.90273 0.88656 0.88688 0.85427 0.90710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.94 9.62 36.00 0.35 -1.60 16 2 C -0.03 -0.51 5.91 -104.32 -0.62 -1.13 16 3 C -0.16 -2.72 9.63 -39.48 -0.38 -3.10 16 4 C 0.13 2.01 6.59 -39.15 -0.26 1.75 16 5 O -0.31 -4.47 9.80 -19.37 -0.19 -4.66 16 6 C 0.08 0.82 2.85 -26.73 -0.08 0.75 16 7 C -0.18 -1.77 9.14 37.15 0.34 -1.43 16 8 C -0.15 -1.20 9.56 37.16 0.36 -0.84 16 9 C -0.22 -3.44 7.82 -39.48 -0.31 -3.75 16 10 C -0.03 -0.53 5.91 -104.32 -0.62 -1.14 16 11 C -0.11 -1.85 9.61 36.00 0.35 -1.50 16 12 C -0.06 -1.13 4.92 -104.88 -0.52 -1.65 16 13 C -0.05 -1.14 2.44 -104.91 -0.26 -1.40 16 14 C -0.20 -4.22 9.46 -38.99 -0.37 -4.59 16 15 C -0.11 -2.47 10.01 -39.71 -0.40 -2.87 16 16 C -0.14 -3.48 8.67 -38.84 -0.34 -3.82 16 17 C 0.08 2.21 5.57 -106.80 -0.59 1.62 16 18 C -0.45 -12.00 8.78 -37.78 -0.33 -12.33 16 19 H 0.08 2.14 7.75 -52.49 -0.41 1.73 16 20 C 0.07 1.85 5.23 -17.34 -0.09 1.75 16 21 N -0.80 -19.90 10.81 55.55 0.60 -19.30 16 22 Si 0.91 18.55 29.58 -169.99 -5.03 13.52 16 23 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 24 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 25 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 26 C -0.01 -0.19 6.95 -38.29 -0.27 -0.46 16 27 F -0.16 -4.05 16.29 2.25 0.04 -4.01 16 28 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.06 0.91 8.09 -51.93 -0.42 0.49 16 30 H 0.08 1.60 6.80 -51.93 -0.35 1.24 16 31 H 0.12 1.83 8.06 -52.49 -0.42 1.41 16 32 H 0.07 0.74 6.38 -51.93 -0.33 0.41 16 33 H 0.07 0.75 6.76 -51.93 -0.35 0.40 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.07 0.52 8.14 -51.92 -0.42 0.09 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.12 1.63 5.36 -52.48 -0.28 1.35 16 40 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 41 H 0.06 0.76 8.08 -51.93 -0.42 0.34 16 42 H 0.08 1.39 6.82 -51.93 -0.35 1.03 16 43 H 0.10 1.84 8.06 -52.48 -0.42 1.42 16 44 H 0.09 1.83 8.06 -52.49 -0.42 1.41 16 45 H 0.13 3.23 6.12 -52.48 -0.32 2.91 16 46 H 0.28 6.41 8.30 -40.82 -0.34 6.07 16 LS Contribution 378.07 15.07 5.70 5.70 Total: -1.00 -27.71 378.07 -9.51 -37.22 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: -6.60 Total: 7.28 kcal Atomic # 6 Polarization: -31.72 SS G_CDS: -4.03 Total: -35.74 kcal Atomic # 7 Polarization: -19.90 SS G_CDS: 0.60 Total: -19.30 kcal Atomic # 8 Polarization: -4.47 SS G_CDS: -0.19 Total: -4.66 kcal Atomic # 9 Polarization: -4.05 SS G_CDS: 0.04 Total: -4.01 kcal Atomic # 14 Polarization: 18.55 SS G_CDS: -5.03 Total: 13.52 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -27.71 -9.51 -37.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236083180.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.717 kcal (2) G-P(sol) polarization free energy of solvation -27.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds