Wall clock time and date at job start Tue Mar 31 2020 14:45:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37915 * 120.03529 * 2 1 4 4 C 1.38821 * 120.06822 * 180.02562 * 3 2 1 5 5 O 1.35882 * 119.93705 * 179.97438 * 4 3 2 6 6 C 1.42896 * 116.99924 * 174.72973 * 5 4 3 7 7 C 1.52991 * 109.47179 * 83.60913 * 6 5 4 8 8 C 1.53005 * 109.46990 * 203.60955 * 6 5 4 9 9 C 1.38827 * 120.12716 * 359.95038 * 4 3 2 10 10 C 1.37914 * 120.07080 * 0.05091 * 9 4 3 11 11 C 1.50697 * 120.03452 * 179.97438 * 10 9 4 12 12 C 1.39370 * 120.03126 * 180.02562 * 2 1 3 13 13 C 1.48372 * 120.06807 * 0.25832 * 12 2 1 14 14 C 1.39601 * 120.01537 * 269.72403 * 13 12 2 15 15 C 1.38461 * 120.42113 * 179.97438 * 14 13 12 16 16 C 1.37660 * 120.44920 * 0.04084 * 15 14 13 17 17 C 1.40749 * 120.02426 * 359.95734 * 16 15 14 18 18 C 1.41319 * 120.20955 * 179.97438 * 17 16 15 19 19 H 1.08000 * 120.00548 * 206.68870 * 18 17 16 20 20 C 1.39932 * 119.99684 * 26.68795 * 18 17 16 21 21 N 1.30846 * 120.00339 * 12.89235 * 20 18 17 22 22 Si 1.86808 * 119.99963 * 192.88839 * 20 18 17 23 23 H 1.48503 * 109.46604 * 90.00244 * 22 20 18 24 24 H 1.48498 * 109.47122 * 210.00398 * 22 20 18 25 25 H 1.48495 * 109.46908 * 330.00406 * 22 20 18 26 26 C 1.39068 * 120.01654 * 89.44119 * 13 12 2 27 27 F 1.35100 * 120.22428 * 0.02562 * 26 13 12 28 28 H 1.09007 * 109.47467 * 269.98351 * 1 2 3 29 29 H 1.09007 * 109.47475 * 29.97607 * 1 2 3 30 30 H 1.09003 * 109.47600 * 149.98173 * 1 2 3 31 31 H 1.07999 * 119.96270 * 359.97438 * 3 2 1 32 32 H 1.08997 * 109.47094 * 323.60486 * 6 5 4 33 33 H 1.08999 * 109.47588 * 299.99842 * 7 6 5 34 34 H 1.09006 * 109.47386 * 59.99978 * 7 6 5 35 35 H 1.09008 * 109.47266 * 179.97438 * 7 6 5 36 36 H 1.09006 * 109.46715 * 60.00050 * 8 6 5 37 37 H 1.08999 * 109.47042 * 180.02562 * 8 6 5 38 38 H 1.08994 * 109.47203 * 300.00057 * 8 6 5 39 39 H 1.08004 * 119.96596 * 180.02562 * 9 4 3 40 40 H 1.08992 * 109.47092 * 269.97287 * 11 10 9 41 41 H 1.08993 * 109.47259 * 29.98096 * 11 10 9 42 42 H 1.09003 * 109.46695 * 149.97437 * 11 10 9 43 43 H 1.08003 * 119.78790 * 359.97438 * 14 13 12 44 44 H 1.07994 * 119.77414 * 180.02562 * 15 14 13 45 45 H 1.08005 * 119.98732 * 179.97438 * 16 15 14 46 46 H 0.96999 * 120.00241 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1940 0.0000 4 6 3.5855 1.1948 -0.0005 5 8 4.2629 2.3727 -0.0011 6 6 5.6854 2.3030 0.1154 7 6 6.2983 2.0519 -1.2638 8 6 6.2165 3.6235 0.6768 9 6 4.2830 -0.0056 0.0000 10 6 3.5982 -1.2027 -0.0001 11 6 4.3562 -2.5052 -0.0001 12 6 2.2045 -1.2066 -0.0005 13 6 1.4649 -2.4928 -0.0069 14 6 1.1171 -3.1044 1.1989 15 6 0.4264 -4.3044 1.2027 16 6 0.0744 -4.9106 0.0180 17 6 0.4155 -4.3105 -1.2087 18 6 0.0566 -4.9296 -2.4273 19 1 0.6416 -4.7500 -3.3172 20 6 -1.0569 -5.7755 -2.4809 21 7 -1.9082 -5.8002 -1.4875 22 14 -1.3280 -6.8694 -3.9707 23 1 -0.6567 -8.1761 -3.7539 24 1 -2.7838 -7.0871 -4.1666 25 1 -0.7588 -6.2144 -5.1758 26 6 1.1126 -3.0868 -1.2140 27 9 1.4420 -2.4969 -2.3839 28 1 -0.3634 -0.0003 1.0277 29 1 -0.3634 0.8902 -0.5135 30 1 -0.3634 -0.8898 -0.5141 31 1 1.6573 2.1292 -0.0004 32 1 5.9555 1.4880 0.7868 33 1 5.9200 1.1112 -1.6638 34 1 6.0282 2.8670 -1.9353 35 1 7.3835 1.9992 -1.1751 36 1 5.7798 3.8023 1.6594 37 1 7.3016 3.5705 0.7652 38 1 5.9464 4.4385 0.0054 39 1 5.3630 -0.0019 0.0000 40 1 4.5385 -2.8194 -1.0277 41 1 5.3082 -2.3716 0.5134 42 1 3.7698 -3.2667 0.5141 43 1 1.3885 -2.6384 2.1347 44 1 0.1623 -4.7681 2.1416 45 1 -0.4639 -5.8468 0.0297 46 1 -2.6802 -6.3863 -1.5249 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001236083180.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:20 Heat of formation + Delta-G solvation = -75.574367 kcal Electronic energy + Delta-G solvation = -27909.514086 eV Core-core repulsion = 24063.056680 eV Total energy + Delta-G solvation = -3846.457405 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.158 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -49.16360 -41.41677 -39.73886 -38.47467 -35.68858 -34.65746 -34.16032 -32.55754 -31.46644 -30.07518 -28.39332 -27.81704 -27.56280 -27.20533 -24.05324 -22.87046 -22.59406 -21.73473 -21.00899 -19.16319 -18.64012 -17.92375 -17.30522 -17.15313 -16.86196 -16.38270 -16.21535 -15.91469 -15.40110 -15.12498 -15.00389 -14.66238 -14.61133 -14.25540 -14.07238 -13.88499 -13.78807 -13.68190 -13.51923 -13.40490 -13.25464 -13.16814 -13.01698 -12.84148 -12.65328 -12.57923 -12.41290 -12.32140 -12.18083 -12.02571 -11.71653 -11.55348 -11.40657 -11.31371 -11.10991 -9.59263 -9.37759 -9.14047 -8.96011 -8.65578 -6.42959 0.35944 0.41942 0.82645 0.85406 1.36010 1.47121 1.49194 2.18716 2.24012 2.65334 2.69912 3.51032 3.76291 3.82673 3.87361 3.92976 4.01771 4.04464 4.15578 4.19677 4.31443 4.50137 4.52462 4.62708 4.69358 4.72921 4.73821 4.76069 4.76985 4.80406 4.85905 4.89579 4.90749 5.02923 5.07474 5.18600 5.20718 5.26580 5.29379 5.32993 5.36411 5.44317 5.65580 5.76455 5.77631 5.83030 6.04070 6.06607 6.19440 6.51861 6.58061 6.79747 6.89676 8.28705 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.021373 B = 0.003075 C = 0.002990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.778791 B = 9104.778668 C = 9363.790583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.039 4.039 3 C -0.170 4.170 4 C 0.133 3.867 5 O -0.322 6.322 6 C 0.066 3.934 7 C -0.180 4.180 8 C -0.143 4.143 9 C -0.214 4.214 10 C -0.039 4.039 11 C -0.112 4.112 12 C -0.094 4.094 13 C -0.032 4.032 14 C -0.194 4.194 15 C -0.106 4.106 16 C -0.162 4.162 17 C 0.059 3.941 18 C -0.495 4.495 19 H 0.065 0.935 20 C 0.039 3.961 21 N -0.821 5.821 22 Si 0.982 3.018 23 H -0.257 1.257 24 H -0.263 1.263 25 H -0.266 1.266 26 C -0.037 4.037 27 F -0.171 7.171 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.043 0.957 31 H 0.142 0.858 32 H 0.079 0.921 33 H 0.049 0.951 34 H 0.063 0.937 35 H 0.095 0.905 36 H 0.062 0.938 37 H 0.100 0.900 38 H 0.064 0.936 39 H 0.152 0.848 40 H 0.062 0.938 41 H 0.092 0.908 42 H 0.059 0.941 43 H 0.121 0.879 44 H 0.125 0.875 45 H 0.116 0.884 46 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.156 11.581 5.151 17.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.039 4.039 3 C -0.188 4.188 4 C 0.087 3.913 5 O -0.236 6.236 6 C 0.010 3.990 7 C -0.237 4.237 8 C -0.200 4.200 9 C -0.232 4.232 10 C -0.039 4.039 11 C -0.168 4.168 12 C -0.094 4.094 13 C -0.033 4.033 14 C -0.213 4.213 15 C -0.125 4.125 16 C -0.182 4.182 17 C 0.056 3.944 18 C -0.525 4.525 19 H 0.083 0.917 20 C -0.176 4.176 21 N -0.447 5.447 22 Si 0.803 3.197 23 H -0.181 1.181 24 H -0.187 1.187 25 H -0.191 1.191 26 C -0.057 4.057 27 F -0.150 7.150 28 H 0.102 0.898 29 H 0.101 0.899 30 H 0.062 0.938 31 H 0.160 0.840 32 H 0.097 0.903 33 H 0.068 0.932 34 H 0.082 0.918 35 H 0.114 0.886 36 H 0.081 0.919 37 H 0.118 0.882 38 H 0.083 0.917 39 H 0.169 0.831 40 H 0.081 0.919 41 H 0.111 0.889 42 H 0.078 0.922 43 H 0.139 0.861 44 H 0.143 0.857 45 H 0.134 0.866 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 11.876 11.706 5.168 17.458 hybrid contribution -0.382 -0.740 -1.065 1.352 sum 11.494 10.967 4.103 16.407 Atomic orbital electron populations 1.20758 0.90407 1.02431 1.02988 1.19872 0.96511 0.91397 0.96114 1.20270 0.91382 0.98136 1.09021 1.18958 0.91569 0.85017 0.95712 1.86086 1.21999 1.27675 1.87888 1.22744 0.77101 1.01096 0.98050 1.22402 1.02622 1.02247 0.96430 1.21864 1.02229 0.94564 1.01340 1.21158 1.00817 0.90686 1.10542 1.19931 0.92228 0.95972 0.95779 1.20791 1.00148 0.93609 1.02255 1.18640 0.92920 0.91938 1.05933 1.18244 0.99449 0.94022 0.91623 1.20553 1.07066 0.98224 0.95436 1.20968 0.98265 0.95761 0.97480 1.21257 1.04708 1.01168 0.91033 1.17889 0.91528 0.89691 0.95307 1.19625 1.11379 1.25512 0.95961 0.91692 1.26648 0.93753 0.96502 1.00746 1.69813 1.09877 1.32199 1.32806 0.85196 0.78582 0.78431 0.77495 1.18101 1.18703 1.19059 1.18178 1.12281 0.95251 0.80002 1.91227 1.91855 1.83920 1.48028 0.89752 0.89868 0.93795 0.84000 0.90350 0.93191 0.91800 0.88620 0.91853 0.88158 0.91652 0.83104 0.91896 0.88920 0.92153 0.86056 0.85684 0.86628 0.89803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.75 9.62 71.23 0.69 -3.06 16 2 C -0.04 -1.40 5.91 -19.67 -0.12 -1.52 16 3 C -0.17 -5.40 9.63 22.33 0.21 -5.18 16 4 C 0.13 3.97 6.59 22.55 0.15 4.12 16 5 O -0.32 -8.35 9.80 -92.22 -0.90 -9.25 16 6 C 0.07 1.19 2.85 30.59 0.09 1.28 16 7 C -0.18 -2.98 9.14 71.98 0.66 -2.33 16 8 C -0.14 -1.85 9.56 71.98 0.69 -1.16 16 9 C -0.21 -6.26 7.82 22.33 0.17 -6.09 16 10 C -0.04 -1.35 5.91 -19.67 -0.12 -1.46 16 11 C -0.11 -3.51 9.61 71.23 0.68 -2.83 16 12 C -0.09 -3.72 4.92 -20.03 -0.10 -3.81 16 13 C -0.03 -1.45 2.44 -20.05 -0.05 -1.50 16 14 C -0.19 -8.12 9.46 22.65 0.21 -7.90 16 15 C -0.11 -4.66 10.01 22.19 0.22 -4.44 16 16 C -0.16 -8.28 8.67 22.75 0.20 -8.08 16 17 C 0.06 3.23 5.57 -21.27 -0.12 3.11 16 18 C -0.50 -27.71 8.78 23.44 0.21 -27.50 16 19 H 0.06 3.68 7.75 -2.91 -0.02 3.66 16 20 C 0.04 1.96 5.23 85.25 0.45 2.41 16 21 N -0.82 -42.30 10.81 21.83 0.24 -42.06 16 22 Si 0.98 38.90 29.58 68.60 2.03 40.93 16 23 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 24 H -0.26 -9.73 7.11 99.48 0.71 -9.02 16 25 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 26 C -0.04 -1.93 6.95 23.10 0.16 -1.77 16 27 F -0.17 -9.25 16.29 44.97 0.73 -8.52 16 28 H 0.08 2.59 8.14 -2.38 -0.02 2.57 16 29 H 0.08 2.41 8.09 -2.38 -0.02 2.39 16 30 H 0.04 1.81 6.80 -2.39 -0.02 1.79 16 31 H 0.14 3.90 8.06 -2.91 -0.02 3.88 16 32 H 0.08 1.34 6.38 -2.39 -0.02 1.32 16 33 H 0.05 1.00 6.76 -2.39 -0.02 0.99 16 34 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 35 H 0.10 1.07 8.14 -2.38 -0.02 1.05 16 36 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 37 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.15 3.50 5.36 -2.91 -0.02 3.48 16 40 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 41 H 0.09 2.21 8.08 -2.39 -0.02 2.19 16 42 H 0.06 2.10 6.82 -2.39 -0.02 2.09 16 43 H 0.12 4.45 8.06 -2.91 -0.02 4.43 16 44 H 0.13 4.64 8.06 -2.91 -0.02 4.62 16 45 H 0.12 6.11 6.12 -2.91 -0.02 6.09 16 46 H 0.29 13.45 8.30 -92.71 -0.77 12.68 16 Total: -1.00 -63.13 378.07 7.37 -55.76 By element: Atomic # 1 Polarization: 29.87 SS G_CDS: 0.99 Total: 30.86 kcal Atomic # 6 Polarization: -72.01 SS G_CDS: 4.29 Total: -67.72 kcal Atomic # 7 Polarization: -42.30 SS G_CDS: 0.24 Total: -42.06 kcal Atomic # 8 Polarization: -8.35 SS G_CDS: -0.90 Total: -9.25 kcal Atomic # 9 Polarization: -9.25 SS G_CDS: 0.73 Total: -8.52 kcal Atomic # 14 Polarization: 38.90 SS G_CDS: 2.03 Total: 40.93 kcal Total: -63.13 7.37 -55.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236083180.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.811 kcal (2) G-P(sol) polarization free energy of solvation -63.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds