Wall clock time and date at job start Tue Mar 31 2020 14:45:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37776 * 120.04668 * 2 1 4 4 C 1.38965 * 120.08619 * 180.32061 * 3 2 1 5 5 O 1.35814 * 119.90637 * 179.69954 * 4 3 2 6 6 C 1.42904 * 116.99690 * 185.07146 * 5 4 3 7 7 C 1.52996 * 109.46956 * 155.11339 * 6 5 4 8 8 C 1.52999 * 109.47157 * 275.11408 * 6 5 4 9 9 C 1.38961 * 120.17933 * 359.67705 * 4 3 2 10 10 C 1.37775 * 120.08859 * 0.02562 * 9 4 3 11 11 C 1.50702 * 120.04181 * 180.02562 * 10 9 4 12 12 C 1.39704 * 119.91163 * 0.02562 * 10 9 4 13 13 C 1.47862 * 120.08599 * 179.97438 * 12 10 9 14 14 C 1.39987 * 119.89798 * 90.00236 * 13 12 10 15 15 C 1.36199 * 120.13661 * 179.97438 * 14 13 12 16 16 C 1.40989 * 119.93032 * 0.02562 * 15 14 13 17 17 C 1.41003 * 120.10240 * 179.97438 * 16 15 14 18 18 H 1.07992 * 120.00102 * 213.97625 * 17 16 15 19 19 C 1.39969 * 119.99606 * 33.97563 * 17 16 15 20 20 N 1.30825 * 120.00066 * 0.44060 * 19 17 16 21 21 Si 1.86801 * 119.99708 * 180.44486 * 19 17 16 22 22 H 1.48497 * 109.47228 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47215 * 120.00236 * 21 19 17 24 24 H 1.48503 * 109.46681 * 239.99909 * 21 19 17 25 25 C 1.40888 * 119.80126 * 359.97438 * 16 15 14 26 26 C 1.36441 * 119.86274 * 0.02562 * 25 16 15 27 27 F 1.35095 * 119.96966 * 179.97438 * 26 25 16 28 28 H 1.08996 * 109.46797 * 270.27967 * 1 2 3 29 29 H 1.09002 * 109.46582 * 30.27816 * 1 2 3 30 30 H 1.09000 * 109.46968 * 150.27440 * 1 2 3 31 31 H 1.07998 * 119.95678 * 359.97438 * 3 2 1 32 32 H 1.09000 * 109.46899 * 35.10943 * 6 5 4 33 33 H 1.08993 * 109.47247 * 59.99937 * 7 6 5 34 34 H 1.09001 * 109.47092 * 180.02562 * 7 6 5 35 35 H 1.09006 * 109.47033 * 299.99613 * 7 6 5 36 36 H 1.09001 * 109.47168 * 59.99951 * 8 6 5 37 37 H 1.08998 * 109.47292 * 180.02562 * 8 6 5 38 38 H 1.09000 * 109.47250 * 300.00228 * 8 6 5 39 39 H 1.07998 * 119.95572 * 180.02562 * 9 4 3 40 40 H 1.08997 * 109.47347 * 269.98604 * 11 10 9 41 41 H 1.09001 * 109.46947 * 29.98627 * 11 10 9 42 42 H 1.09001 * 109.46836 * 149.97745 * 11 10 9 43 43 H 1.07994 * 119.92991 * 0.25322 * 14 13 12 44 44 H 1.08003 * 120.03707 * 179.97438 * 15 14 13 45 45 H 0.96995 * 119.99856 * 180.02562 * 20 19 17 46 46 H 1.07995 * 120.06813 * 180.02562 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1926 0.0000 4 6 3.5865 1.1936 -0.0067 5 8 4.2628 2.3713 -0.0129 6 6 5.6852 2.3020 -0.1322 7 6 6.2110 3.6084 -0.7302 8 6 6.3032 2.0892 1.2512 9 6 4.2859 -0.0072 -0.0067 10 6 3.6035 -1.2040 -0.0005 11 6 4.3630 -2.5056 0.0001 12 6 2.2065 -1.2094 0.0051 13 6 1.4701 -2.4916 0.0112 14 6 1.1276 -3.0938 1.2276 15 6 0.4489 -4.2746 1.2389 16 6 0.0912 -4.8920 0.0229 17 6 -0.6110 -6.1147 0.0303 18 1 -0.4302 -6.8459 -0.7436 19 6 -1.5422 -6.3808 1.0407 20 7 -1.7675 -5.4914 1.9734 21 14 -2.4634 -8.0058 1.0576 22 1 -2.0309 -8.8320 -0.0980 23 1 -2.1692 -8.7285 2.3211 24 1 -3.9229 -7.7484 0.9629 25 6 0.4374 -4.2835 -1.1998 26 6 1.1173 -3.1006 -1.2014 27 9 1.4508 -2.5154 -2.3725 28 1 -0.3633 0.0050 1.0276 29 1 -0.3632 0.8875 -0.5182 30 1 -0.3633 -0.8924 -0.5096 31 1 1.6569 2.1279 -0.0004 32 1 5.9551 1.4700 -0.7825 33 1 5.9411 4.4403 -0.0798 34 1 7.2959 3.5553 -0.8216 35 1 5.7707 3.7599 -1.7158 36 1 5.9285 1.1585 1.6773 37 1 7.3881 2.0368 1.1603 38 1 6.0332 2.9211 1.9017 39 1 5.3659 -0.0022 -0.0115 40 1 4.5418 -2.8225 -1.0274 41 1 5.3170 -2.3693 0.5094 42 1 3.7797 -3.2664 0.5188 43 1 1.3980 -2.6188 2.1590 44 1 0.1858 -4.7380 2.1783 45 1 -2.4126 -5.6760 2.6738 46 1 0.1651 -4.7524 -2.1337 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001236083687.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:24 Heat of formation + Delta-G solvation = -65.434519 kcal Electronic energy + Delta-G solvation = -27682.477804 eV Core-core repulsion = 23836.460096 eV Total energy + Delta-G solvation = -3846.017708 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.158 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -47.73771 -40.16216 -38.34112 -36.97059 -33.90328 -33.38590 -32.99648 -31.11071 -29.38853 -28.76766 -27.58538 -27.04306 -26.39597 -24.88601 -22.54367 -21.44554 -21.09525 -20.24059 -19.71600 -17.68227 -17.53922 -16.12210 -15.92116 -15.42909 -15.33368 -15.09869 -14.69851 -14.49428 -14.14231 -13.94394 -13.55681 -13.32764 -13.05985 -12.80666 -12.76005 -12.72790 -12.61741 -12.45497 -12.31667 -12.20565 -12.09502 -11.79379 -11.52300 -11.45511 -11.32483 -11.20259 -11.05340 -11.00774 -10.63655 -10.43189 -10.35223 -10.16296 -10.08467 -9.53080 -9.31638 -8.26307 -7.64368 -7.56253 -7.23205 -6.81722 -4.57315 1.71352 1.81279 2.52081 2.81809 3.01455 3.03943 3.07470 3.27531 3.84819 4.07022 4.48353 4.62124 4.74846 4.90727 5.11733 5.15446 5.31321 5.33254 5.41061 5.43959 5.51872 5.57049 5.59446 5.63528 5.77461 5.84062 5.85054 5.96672 5.99771 6.04206 6.09307 6.13799 6.19642 6.27363 6.44560 6.60122 6.72990 6.73718 6.84802 6.86962 6.93289 7.11017 7.15404 7.20374 7.51396 7.52918 7.70461 7.87135 7.93484 8.10182 8.47281 8.72534 8.76116 10.09857 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.025787 B = 0.002778 C = 0.002763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.557873 B =10075.884305 C =10131.416450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.034 4.034 3 C -0.163 4.163 4 C 0.122 3.878 5 O -0.315 6.315 6 C 0.077 3.923 7 C -0.147 4.147 8 C -0.180 4.180 9 C -0.219 4.219 10 C -0.035 4.035 11 C -0.112 4.112 12 C -0.037 4.037 13 C -0.203 4.203 14 C -0.065 4.065 15 C -0.160 4.160 16 C 0.132 3.868 17 C -0.455 4.455 18 H 0.080 0.920 19 C 0.071 3.929 20 N -0.799 5.799 21 Si 0.917 3.083 22 H -0.261 1.261 23 H -0.272 1.272 24 H -0.273 1.273 25 C -0.256 4.256 26 C 0.129 3.871 27 F -0.164 7.164 28 H 0.070 0.930 29 H 0.058 0.942 30 H 0.076 0.924 31 H 0.122 0.878 32 H 0.072 0.928 33 H 0.065 0.935 34 H 0.073 0.927 35 H 0.063 0.937 36 H 0.065 0.935 37 H 0.068 0.932 38 H 0.065 0.935 39 H 0.122 0.878 40 H 0.067 0.933 41 H 0.056 0.944 42 H 0.079 0.921 43 H 0.096 0.904 44 H 0.129 0.871 45 H 0.281 0.719 46 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.470 10.556 -0.552 14.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.034 4.034 3 C -0.182 4.182 4 C 0.077 3.923 5 O -0.229 6.229 6 C 0.020 3.980 7 C -0.205 4.205 8 C -0.237 4.237 9 C -0.238 4.238 10 C -0.035 4.035 11 C -0.168 4.168 12 C -0.038 4.038 13 C -0.205 4.205 14 C -0.084 4.084 15 C -0.180 4.180 16 C 0.129 3.871 17 C -0.485 4.485 18 H 0.098 0.902 19 C -0.146 4.146 20 N -0.424 5.424 21 Si 0.741 3.259 22 H -0.184 1.184 23 H -0.197 1.197 24 H -0.198 1.198 25 C -0.276 4.276 26 C 0.110 3.890 27 F -0.143 7.143 28 H 0.089 0.911 29 H 0.077 0.923 30 H 0.095 0.905 31 H 0.140 0.860 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.092 0.908 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.084 0.916 39 H 0.140 0.860 40 H 0.086 0.914 41 H 0.075 0.925 42 H 0.098 0.902 43 H 0.114 0.886 44 H 0.147 0.853 45 H 0.092 0.908 46 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 10.259 10.802 -0.370 14.902 hybrid contribution -0.277 -0.650 -0.130 0.718 sum 9.983 10.152 -0.500 14.246 Atomic orbital electron populations 1.20744 0.90782 1.02701 1.02388 1.19900 0.96031 0.91381 0.96069 1.20092 0.90622 0.98150 1.09332 1.18914 0.91505 0.84210 0.97658 1.86050 1.19845 1.28637 1.88409 1.22354 0.79115 0.99400 0.97095 1.21840 1.00765 0.96317 1.01530 1.22378 1.00940 1.03242 0.97146 1.20933 0.99387 0.91705 1.11753 1.19870 0.93143 0.94382 0.96126 1.20765 0.98862 0.94984 1.02223 1.18477 0.91424 0.92364 1.01509 1.17834 1.12998 0.97554 0.92105 1.20334 0.97993 0.95588 0.94493 1.21217 1.00788 0.96568 0.99386 1.17471 0.87681 0.92125 0.89811 1.19573 1.18561 1.01467 1.08912 0.90172 1.25935 0.96717 0.98087 0.93832 1.69759 1.28572 1.33535 1.10575 0.86112 0.79254 0.81228 0.79277 1.18423 1.19745 1.19824 1.20759 1.10891 0.97018 0.98961 1.17233 0.99396 0.92958 0.79372 1.91344 1.91173 1.84560 1.47260 0.91104 0.92307 0.90515 0.85962 0.90971 0.91620 0.90771 0.91744 0.91597 0.91319 0.91619 0.86005 0.91449 0.92515 0.90228 0.88574 0.85324 0.90779 0.87718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.86 9.62 36.01 0.35 -1.51 16 2 C -0.03 -0.61 5.91 -104.24 -0.62 -1.23 16 3 C -0.16 -2.71 9.63 -39.48 -0.38 -3.09 16 4 C 0.12 1.94 6.61 -39.04 -0.26 1.68 16 5 O -0.31 -4.48 9.79 -19.16 -0.19 -4.67 16 6 C 0.08 0.82 2.84 -26.73 -0.08 0.75 16 7 C -0.15 -1.22 9.56 37.16 0.36 -0.87 16 8 C -0.18 -1.69 9.17 37.16 0.34 -1.35 16 9 C -0.22 -3.42 7.87 -39.48 -0.31 -3.74 16 10 C -0.04 -0.62 5.91 -104.24 -0.62 -1.23 16 11 C -0.11 -1.78 9.62 36.01 0.35 -1.43 16 12 C -0.04 -0.73 4.92 -104.86 -0.52 -1.24 16 13 C -0.20 -4.34 2.47 -104.57 -0.26 -4.60 16 14 C -0.07 -1.44 9.41 -39.66 -0.37 -1.81 16 15 C -0.16 -3.87 8.58 -39.27 -0.34 -4.21 16 16 C 0.13 3.32 5.54 -106.81 -0.59 2.72 16 17 C -0.46 -11.42 9.02 -37.89 -0.34 -11.76 16 18 H 0.08 1.94 7.85 -52.49 -0.41 1.53 16 19 C 0.07 1.70 5.38 -17.33 -0.09 1.61 16 20 N -0.80 -19.52 10.70 55.55 0.59 -18.93 16 21 Si 0.92 17.92 29.56 -169.99 -5.02 12.89 16 22 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 23 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 24 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 25 C -0.26 -6.14 9.70 -39.23 -0.38 -6.52 16 26 C 0.13 2.95 6.91 -39.49 -0.27 2.68 16 27 F -0.16 -3.70 16.80 2.25 0.04 -3.66 16 28 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 29 H 0.06 0.85 8.09 -51.93 -0.42 0.43 16 30 H 0.08 1.47 6.83 -51.93 -0.35 1.12 16 31 H 0.12 1.81 8.06 -52.49 -0.42 1.39 16 32 H 0.07 0.77 6.29 -51.93 -0.33 0.44 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.06 0.70 6.92 -51.93 -0.36 0.34 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.12 1.61 5.41 -52.49 -0.28 1.32 16 40 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.06 0.75 8.08 -51.93 -0.42 0.33 16 42 H 0.08 1.39 6.84 -51.93 -0.36 1.04 16 43 H 0.10 1.96 8.06 -52.49 -0.42 1.54 16 44 H 0.13 3.22 6.23 -52.48 -0.33 2.89 16 45 H 0.28 6.26 8.30 -40.82 -0.34 5.93 16 46 H 0.10 2.42 8.06 -52.49 -0.42 2.00 16 LS Contribution 378.85 15.07 5.71 5.71 Total: -1.00 -26.50 378.85 -9.52 -36.02 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: -6.62 Total: 7.79 kcal Atomic # 6 Polarization: -31.12 SS G_CDS: -4.03 Total: -35.15 kcal Atomic # 7 Polarization: -19.52 SS G_CDS: 0.59 Total: -18.93 kcal Atomic # 8 Polarization: -4.48 SS G_CDS: -0.19 Total: -4.67 kcal Atomic # 9 Polarization: -3.70 SS G_CDS: 0.04 Total: -3.66 kcal Atomic # 14 Polarization: 17.92 SS G_CDS: -5.02 Total: 12.89 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -26.50 -9.52 -36.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236083687.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.414 kcal (2) G-P(sol) polarization free energy of solvation -26.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds