Wall clock time and date at job start Tue Mar 31 2020 14:45:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37776 * 120.04668 * 2 1 4 4 C 1.38965 * 120.08619 * 180.32061 * 3 2 1 5 5 O 1.35814 * 119.90637 * 179.69954 * 4 3 2 6 6 C 1.42904 * 116.99690 * 185.07146 * 5 4 3 7 7 C 1.52996 * 109.46956 * 155.11339 * 6 5 4 8 8 C 1.52999 * 109.47157 * 275.11408 * 6 5 4 9 9 C 1.38961 * 120.17933 * 359.67705 * 4 3 2 10 10 C 1.37775 * 120.08859 * 0.02562 * 9 4 3 11 11 C 1.50702 * 120.04181 * 180.02562 * 10 9 4 12 12 C 1.39704 * 119.91163 * 0.02562 * 10 9 4 13 13 C 1.47862 * 120.08599 * 179.97438 * 12 10 9 14 14 C 1.39987 * 119.89798 * 90.00236 * 13 12 10 15 15 C 1.36199 * 120.13661 * 179.97438 * 14 13 12 16 16 C 1.40989 * 119.93032 * 0.02562 * 15 14 13 17 17 C 1.41003 * 120.10240 * 179.97438 * 16 15 14 18 18 H 1.07992 * 120.00102 * 213.97625 * 17 16 15 19 19 C 1.39969 * 119.99606 * 33.97563 * 17 16 15 20 20 N 1.30825 * 120.00066 * 0.44060 * 19 17 16 21 21 Si 1.86801 * 119.99708 * 180.44486 * 19 17 16 22 22 H 1.48497 * 109.47228 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47215 * 120.00236 * 21 19 17 24 24 H 1.48503 * 109.46681 * 239.99909 * 21 19 17 25 25 C 1.40888 * 119.80126 * 359.97438 * 16 15 14 26 26 C 1.36441 * 119.86274 * 0.02562 * 25 16 15 27 27 F 1.35095 * 119.96966 * 179.97438 * 26 25 16 28 28 H 1.08996 * 109.46797 * 270.27967 * 1 2 3 29 29 H 1.09002 * 109.46582 * 30.27816 * 1 2 3 30 30 H 1.09000 * 109.46968 * 150.27440 * 1 2 3 31 31 H 1.07998 * 119.95678 * 359.97438 * 3 2 1 32 32 H 1.09000 * 109.46899 * 35.10943 * 6 5 4 33 33 H 1.08993 * 109.47247 * 59.99937 * 7 6 5 34 34 H 1.09001 * 109.47092 * 180.02562 * 7 6 5 35 35 H 1.09006 * 109.47033 * 299.99613 * 7 6 5 36 36 H 1.09001 * 109.47168 * 59.99951 * 8 6 5 37 37 H 1.08998 * 109.47292 * 180.02562 * 8 6 5 38 38 H 1.09000 * 109.47250 * 300.00228 * 8 6 5 39 39 H 1.07998 * 119.95572 * 180.02562 * 9 4 3 40 40 H 1.08997 * 109.47347 * 269.98604 * 11 10 9 41 41 H 1.09001 * 109.46947 * 29.98627 * 11 10 9 42 42 H 1.09001 * 109.46836 * 149.97745 * 11 10 9 43 43 H 1.07994 * 119.92991 * 0.25322 * 14 13 12 44 44 H 1.08003 * 120.03707 * 179.97438 * 15 14 13 45 45 H 0.96995 * 119.99856 * 180.02562 * 20 19 17 46 46 H 1.07995 * 120.06813 * 180.02562 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1926 0.0000 4 6 3.5865 1.1936 -0.0067 5 8 4.2628 2.3713 -0.0129 6 6 5.6852 2.3020 -0.1322 7 6 6.2110 3.6084 -0.7302 8 6 6.3032 2.0892 1.2512 9 6 4.2859 -0.0072 -0.0067 10 6 3.6035 -1.2040 -0.0005 11 6 4.3630 -2.5056 0.0001 12 6 2.2065 -1.2094 0.0051 13 6 1.4701 -2.4916 0.0112 14 6 1.1276 -3.0938 1.2276 15 6 0.4489 -4.2746 1.2389 16 6 0.0912 -4.8920 0.0229 17 6 -0.6110 -6.1147 0.0303 18 1 -0.4302 -6.8459 -0.7436 19 6 -1.5422 -6.3808 1.0407 20 7 -1.7675 -5.4914 1.9734 21 14 -2.4634 -8.0058 1.0576 22 1 -2.0309 -8.8320 -0.0980 23 1 -2.1692 -8.7285 2.3211 24 1 -3.9229 -7.7484 0.9629 25 6 0.4374 -4.2835 -1.1998 26 6 1.1173 -3.1006 -1.2014 27 9 1.4508 -2.5154 -2.3725 28 1 -0.3633 0.0050 1.0276 29 1 -0.3632 0.8875 -0.5182 30 1 -0.3633 -0.8924 -0.5096 31 1 1.6569 2.1279 -0.0004 32 1 5.9551 1.4700 -0.7825 33 1 5.9411 4.4403 -0.0798 34 1 7.2959 3.5553 -0.8216 35 1 5.7707 3.7599 -1.7158 36 1 5.9285 1.1585 1.6773 37 1 7.3881 2.0368 1.1603 38 1 6.0332 2.9211 1.9017 39 1 5.3659 -0.0022 -0.0115 40 1 4.5418 -2.8225 -1.0274 41 1 5.3170 -2.3693 0.5094 42 1 3.7797 -3.2664 0.5188 43 1 1.3980 -2.6188 2.1590 44 1 0.1858 -4.7380 2.1783 45 1 -2.4126 -5.6760 2.6738 46 1 0.1651 -4.7524 -2.1337 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001236083687.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:24 Heat of formation + Delta-G solvation = -74.476809 kcal Electronic energy + Delta-G solvation = -27682.869907 eV Core-core repulsion = 23836.460096 eV Total energy + Delta-G solvation = -3846.409811 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.158 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.57001 -41.36404 -39.77652 -38.54129 -35.56204 -34.61559 -34.12820 -32.62655 -31.09429 -30.41806 -28.60378 -28.31046 -27.58915 -26.51810 -23.79529 -22.95127 -22.77832 -21.69864 -20.93310 -19.53243 -18.62817 -17.66770 -17.26483 -17.04454 -16.90990 -16.48894 -16.31356 -16.17766 -15.32980 -15.10692 -14.99224 -14.75278 -14.48538 -14.14506 -14.06321 -14.03875 -13.86029 -13.74284 -13.50128 -13.45887 -13.24868 -13.09866 -13.01754 -12.82852 -12.71543 -12.58195 -12.38474 -12.22550 -12.05257 -11.95599 -11.88023 -11.52653 -11.43862 -11.24730 -11.07693 -9.56603 -9.48998 -9.07509 -8.88894 -8.60579 -6.46581 0.40548 0.46302 0.75193 0.93314 1.40961 1.47351 1.55438 2.21237 2.26172 2.67586 2.74189 3.51967 3.77570 3.80174 3.89199 3.90317 4.03081 4.03880 4.16986 4.21583 4.35894 4.35940 4.53751 4.66700 4.71370 4.75561 4.77465 4.78091 4.82252 4.86221 4.88670 4.90595 4.96455 5.02365 5.07140 5.11078 5.20584 5.26692 5.28176 5.35376 5.40303 5.49610 5.66428 5.71244 5.83653 5.86877 6.03500 6.06002 6.25201 6.55048 6.59904 6.86291 6.89242 8.33438 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.025787 B = 0.002778 C = 0.002763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.557873 B =10075.884305 C =10131.416450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.043 4.043 3 C -0.170 4.170 4 C 0.129 3.871 5 O -0.323 6.323 6 C 0.065 3.935 7 C -0.144 4.144 8 C -0.177 4.177 9 C -0.214 4.214 10 C -0.042 4.042 11 C -0.110 4.110 12 C -0.075 4.075 13 C -0.175 4.175 14 C -0.064 4.064 15 C -0.172 4.172 16 C 0.107 3.893 17 C -0.489 4.489 18 H 0.078 0.922 19 C 0.033 3.967 20 N -0.827 5.827 21 Si 0.988 3.012 22 H -0.259 1.259 23 H -0.263 1.263 24 H -0.268 1.268 25 C -0.269 4.269 26 C 0.119 3.881 27 F -0.163 7.163 28 H 0.075 0.925 29 H 0.083 0.917 30 H 0.047 0.953 31 H 0.139 0.861 32 H 0.075 0.925 33 H 0.066 0.934 34 H 0.099 0.901 35 H 0.059 0.941 36 H 0.052 0.948 37 H 0.094 0.906 38 H 0.064 0.936 39 H 0.149 0.851 40 H 0.067 0.933 41 H 0.087 0.913 42 H 0.057 0.943 43 H 0.112 0.888 44 H 0.117 0.883 45 H 0.289 0.711 46 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.122 12.005 -0.304 17.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.043 4.043 3 C -0.189 4.189 4 C 0.084 3.916 5 O -0.237 6.237 6 C 0.009 3.991 7 C -0.201 4.201 8 C -0.234 4.234 9 C -0.232 4.232 10 C -0.042 4.042 11 C -0.166 4.166 12 C -0.076 4.076 13 C -0.177 4.177 14 C -0.083 4.083 15 C -0.191 4.191 16 C 0.104 3.896 17 C -0.519 4.519 18 H 0.096 0.904 19 C -0.181 4.181 20 N -0.454 5.454 21 Si 0.809 3.191 22 H -0.183 1.183 23 H -0.187 1.187 24 H -0.193 1.193 25 C -0.290 4.290 26 C 0.100 3.900 27 F -0.142 7.142 28 H 0.094 0.906 29 H 0.102 0.898 30 H 0.066 0.934 31 H 0.157 0.843 32 H 0.093 0.907 33 H 0.085 0.915 34 H 0.118 0.882 35 H 0.078 0.922 36 H 0.071 0.929 37 H 0.112 0.888 38 H 0.083 0.917 39 H 0.167 0.833 40 H 0.086 0.914 41 H 0.106 0.894 42 H 0.076 0.924 43 H 0.130 0.870 44 H 0.134 0.866 45 H 0.100 0.900 46 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 11.933 12.273 -0.127 17.118 hybrid contribution -0.628 -0.879 -0.228 1.104 sum 11.304 11.394 -0.355 16.054 Atomic orbital electron populations 1.20717 0.90533 1.02432 1.02636 1.19992 0.96422 0.91557 0.96323 1.20261 0.91314 0.98161 1.09146 1.19026 0.91576 0.84984 0.96054 1.86065 1.21973 1.27769 1.87918 1.22741 0.77210 1.00944 0.98186 1.21870 1.02243 0.94955 1.01032 1.22368 1.02456 1.02483 0.96094 1.21140 1.00696 0.90776 1.10630 1.20049 0.92523 0.95753 0.95911 1.20763 0.99826 0.93683 1.02339 1.18512 0.92460 0.91653 1.04939 1.17966 1.10852 0.97824 0.91058 1.20492 0.97283 0.94924 0.95565 1.21162 1.01768 0.97526 0.98652 1.17723 0.88542 0.92908 0.90411 1.19783 1.20063 1.01886 1.10131 0.90410 1.26754 0.96962 1.01429 0.92987 1.69810 1.29225 1.35193 1.11139 0.85049 0.77803 0.76762 0.79462 1.18298 1.18735 1.19263 1.20843 1.11612 0.97716 0.98784 1.17351 0.99708 0.92886 0.80035 1.91334 1.91168 1.84463 1.47233 0.90638 0.89825 0.93430 0.84277 0.90666 0.91504 0.88205 0.92153 0.92895 0.88756 0.91678 0.83337 0.91423 0.89424 0.92421 0.87002 0.86560 0.90016 0.87765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.59 9.62 71.24 0.69 -2.90 16 2 C -0.04 -1.52 5.91 -19.62 -0.12 -1.64 16 3 C -0.17 -5.36 9.63 22.33 0.21 -5.14 16 4 C 0.13 3.82 6.61 22.62 0.15 3.97 16 5 O -0.32 -8.34 9.79 -91.46 -0.90 -9.24 16 6 C 0.06 1.18 2.84 30.59 0.09 1.27 16 7 C -0.14 -1.92 9.56 71.98 0.69 -1.23 16 8 C -0.18 -2.75 9.17 71.98 0.66 -2.09 16 9 C -0.21 -6.18 7.87 22.33 0.18 -6.01 16 10 C -0.04 -1.43 5.91 -19.62 -0.12 -1.54 16 11 C -0.11 -3.36 9.62 71.24 0.69 -2.68 16 12 C -0.08 -2.91 4.92 -20.02 -0.10 -3.00 16 13 C -0.18 -7.63 2.47 -19.83 -0.05 -7.68 16 14 C -0.06 -2.89 9.41 22.22 0.21 -2.69 16 15 C -0.17 -8.63 8.58 22.47 0.19 -8.44 16 16 C 0.11 5.61 5.54 -21.28 -0.12 5.49 16 17 C -0.49 -25.50 9.02 23.37 0.21 -25.29 16 18 H 0.08 3.93 7.85 -2.91 -0.02 3.91 16 19 C 0.03 1.60 5.38 85.26 0.46 2.06 16 20 N -0.83 -41.46 10.70 21.83 0.23 -41.22 16 21 Si 0.99 37.06 29.56 68.60 2.03 39.08 16 22 H -0.26 -9.56 7.11 99.48 0.71 -8.86 16 23 H -0.26 -9.38 7.11 99.48 0.71 -8.67 16 24 H -0.27 -9.74 7.11 99.48 0.71 -9.04 16 25 C -0.27 -13.49 9.70 22.50 0.22 -13.27 16 26 C 0.12 5.60 6.91 22.33 0.15 5.75 16 27 F -0.16 -7.46 16.80 44.97 0.76 -6.71 16 28 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 29 H 0.08 2.32 8.09 -2.39 -0.02 2.31 16 30 H 0.05 1.86 6.83 -2.39 -0.02 1.84 16 31 H 0.14 3.81 8.06 -2.91 -0.02 3.79 16 32 H 0.08 1.34 6.29 -2.39 -0.02 1.32 16 33 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 36 H 0.05 0.97 6.92 -2.39 -0.02 0.95 16 37 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.15 3.41 5.41 -2.91 -0.02 3.39 16 40 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 41 H 0.09 2.09 8.08 -2.39 -0.02 2.07 16 42 H 0.06 2.01 6.84 -2.39 -0.02 1.99 16 43 H 0.11 4.62 8.06 -2.91 -0.02 4.59 16 44 H 0.12 6.09 6.23 -2.91 -0.02 6.07 16 45 H 0.29 13.07 8.30 -92.71 -0.77 12.30 16 46 H 0.10 5.06 8.06 -2.91 -0.02 5.04 16 Total: -1.00 -58.59 378.85 7.40 -51.19 By element: Atomic # 1 Polarization: 30.96 SS G_CDS: 0.99 Total: 31.94 kcal Atomic # 6 Polarization: -69.34 SS G_CDS: 4.29 Total: -65.05 kcal Atomic # 7 Polarization: -41.46 SS G_CDS: 0.23 Total: -41.22 kcal Atomic # 8 Polarization: -8.34 SS G_CDS: -0.90 Total: -9.24 kcal Atomic # 9 Polarization: -7.46 SS G_CDS: 0.76 Total: -6.71 kcal Atomic # 14 Polarization: 37.06 SS G_CDS: 2.03 Total: 39.08 kcal Total: -58.59 7.40 -51.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236083687.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.291 kcal (2) G-P(sol) polarization free energy of solvation -58.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds